BAC Information

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BAC

Clone NameB6Ng01-032M18
Chromosome1 (Build37)
Map Location 89,430,878 - 89,602,066
singlet/doubletdoublet
Overlap geneLOC620454, Neu2, Inpp5d
Upstream genePde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef
Downstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032M18.bB6Ng01-032M18.g
ACCDH862028DH862029
length721939
definitionDH862028|Mus musculus domesticus DNA, BAC clone: B6Ng01-032M18, 5' end.DH862029|Mus musculus domesticus DNA, BAC clone: B6Ng01-032M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,601,546 - 89,602,066)(89,430,878 - 89,431,814)
sequence
gaattcagtgcagccaaaggatcatgagcaaaggactcagtggtttgttg
ttgttttagatttgtttatttatttttatgcatatgagtacactgtagtt
gtcttcagacacaccagaagagggcatcagatcccattacagatggttgt
gagccaccatgtgatgtgattgctgggaattgaactcaggctcttaacct
ctgagccatttctccagcccaggactcagtgttttaagaactgggattta
gggcatttgctatgcagcgatagatagttgatacacccgattatgaacca
gttggaagaaaacccagggccccctttcttgtttttgtttttgtttttgt
ttttgtttttgttttgttttgttttgttttgttttgttttgttttgtttt
tccgagacagggtttctctgtatagtcttggctgtcctggaactcacttt
gtagaccaggctggcctcaaactcagaaatttgcctgtctctgcctccca
agtgctgggattaaaggcgtgcgccaccaccgcccgtcccagggccccct
ttcttgcattctagatatgaattcttttttctttccccaacttcttggct
tcctctatggccaactccttaaacccttctactgcgtcctctggctctca
aaagaatattagcaaaatatatacatctttcagctttcctgtgaagatgg
cacagcctttacatataaggg
gaattcatggcagtggttgtgtttgagatggatcagtagatgttagtcac
ggaacttgactccacctagtcaagttacataagcagtaaaccatggctgg
gagctggcaggaacgaggaggagaggagcctttggtggtgtagctgcctg
aatcttgcatggggcactccggcaatgtagttttgtgagttgtttgccca
tgctgggataggattttctgtgatgttcctacctgatgctcttgtgttct
tgcaaataactcctgacccatgctcctgtaagtaaccccaggagacccat
tggatcaccgcactggacctggcagaatcattgctttgatctacctttga
cctctgtttctacggttaatagaaatacactcgctgggaaaagtcacaca
acaccgattctaataatgatgtgttacagttagctcagcaaatgaagcac
cattccagtgtctctctgtaaggagcagtgttctgccctgactgtgcttc
cttctgatcacctcgcccagcatcactgtaactcagtacatggaatcgtg
ctccgtaattgtctgagctgcagacaattctagaaccttgtgggtaggta
ctgatcataaaagcgatgcatgcctcttatcagcaaccctacccccaagt
tttcagagactaaaggcctgtggttcttgcagccattctgaagaccctag
ccaactagtcctctaacctgcagccagcagtccctgctgtccctacctca
atctgtagctttttacttcatgcatttagtattcttcatcctttagtatt
ctctcgtgcgagatccagaccctaacagataacaatagatacaccaaggg
ttgcctggttctccctgacttttttgtttctttcaagatttattttcatt
gcctgtgtattggtgtgaatatatatatgtgggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89601546_89602066
seq2: B6Ng01-032M18.b_244_765 (reverse)

seq1  CCTTATATGT-AAGGCTGTGCCATCTTCCACAGGAAGGCTG-AAGATGTA  48
      |||||||||| |||||||||||||||| |||||||| |||| ||||||||
seq2  CCTTATATGTAAAGGCTGTGCCATCTT-CACAGGAAAGCTGAAAGATGTA  49

seq1  TATATTTTGCTAATATTCTTTTGAGAGCCAGAGGACGCAGTAGAAGGGTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGCTAATATTCTTTTGAGAGCCAGAGGACGCAGTAGAAGGGTT  99

seq1  TAAGGAGTTGGCCATAGAGGAAGCCAAGAAGTTGGGGAAAGAAAAAAGAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGTTGGCCATAGAGGAAGCCAAGAAGTTGGGGAAAGAAAAAAGAA  149

seq1  TTCATATCTAGAATGCAAGAAAGGGGGCCCTGGGACGGGCGGTGGTGGCG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCTAGAATGCAAGAAAGGGGGCCCTGGGACGGGCGGTGGTGGCG  199

seq1  CACGCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGCAAATTTCTGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGCAAATTTCTGAG  249

seq1  TTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGACTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGACTAT  299

seq1  ACAGAGAAACCCTGTCTCGGAAAAACAAAACAAAACAAAACAAAACAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCGGAAAAACAAAACAAAACAAAACAAAACAAAA  349

seq1  CAAAACAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAGAAAGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAGAAAGGG  399

seq1  GGCCCTGGGTTTTCTTCCAACTGGTTCATAATCGGGTGTATCAACTATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGGTTTTCTTCCAACTGGTTCATAATCGGGTGTATCAACTATCT  449

seq1  ATCGCTGCATAGCAAATGCCCTAAATCCCAGTTCTTAAAACACTGAGTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTGCATAGCAAATGCCCTAAATCCCAGTTCTTAAAACACTGAGTCC  499

seq1  TGGGCTGGAGAAATGGCTCAGAG  521
      |||||||||||||||||||||||
seq2  TGGGCTGGAGAAATGGCTCAGAG  522

seq1: chr1_89430878_89431814
seq2: B6Ng01-032M18.g_70_1008

seq1  GAATTCATGGCAGTGGTTGTGTTTGAGATGGATCAGTAGATGTTAGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCAGTGGTTGTGTTTGAGATGGATCAGTAGATGTTAGTCAC  50

seq1  GGAACTTGACTCCACCTAGTCAAGTTACATAAGCAGTAAACCATGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTGACTCCACCTAGTCAAGTTACATAAGCAGTAAACCATGGCTGG  100

seq1  GAGCTGGCAGGAACGAGGAGGAGAGGAGCCTTTGGTGGTGTAGCTGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCAGGAACGAGGAGGAGAGGAGCCTTTGGTGGTGTAGCTGCCTG  150

seq1  AATCTTGCATGGGGCACTCCGGCAATGTAGTTTTGTGAGTTGTTTGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCATGGGGCACTCCGGCAATGTAGTTTTGTGAGTTGTTTGCCCA  200

seq1  TGCTGGGATAGGATTTTCTGTGATGTTCCTACCTGATGCTCTTGTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATAGGATTTTCTGTGATGTTCCTACCTGATGCTCTTGTGTTCT  250

seq1  TGCAAATAACTCCTGACCCATGCTCCTGTAAGTAACCCCAGGAGACCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATAACTCCTGACCCATGCTCCTGTAAGTAACCCCAGGAGACCCAT  300

seq1  TGGATCACCGCACTGGACCTGGCAGAATCATTGCTTTGATCTACCTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACCGCACTGGACCTGGCAGAATCATTGCTTTGATCTACCTTTGA  350

seq1  CCTCTGTTTCTACGGTTAATAGAAATACACTCGCTGGGAAAAGTCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTCTACGGTTAATAGAAATACACTCGCTGGGAAAAGTCACACA  400

seq1  ACACCGATTCTAATAATGATGTGTTACAGTTAGCTCAGCAAATGAAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGATTCTAATAATGATGTGTTACAGTTAGCTCAGCAAATGAAGCAC  450

seq1  CATTCCAGTGTCTCTCTGTAAGGAGCAGTGTTCTGCCCTGACTGTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGTGTCTCTCTGTAAGGAGCAGTGTTCTGCCCTGACTGTGCTTC  500

seq1  CTTCTGATCACCTCGCCCAGCATCACTGTAACTCAGTACATGGAATCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATCACCTCGCCCAGCATCACTGTAACTCAGTACATGGAATCGTG  550

seq1  CTCCGTAATTGTCTGAGCTGCAGACAATTCTAGAACCTTGTGGGTAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTAATTGTCTGAGCTGCAGACAATTCTAGAACCTTGTGGGTAGGTA  600

seq1  CTGATCAT-AAAGCGATGCATGCCTCTTATCAGCAACCCTACCCCCAAGT  649
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATAAAAGCGATGCATGCCTCTTATCAGCAACCCTACCCCCAAGT  650

seq1  TTTCAGAGACTAAAGGCCTGTGGTTCTTGCAGCCATTCTGAAGACCCTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGACTAAAGGCCTGTGGTTCTTGCAGCCATTCTGAAGACCCTAG  700

seq1  CCAACTAGTCCTCTAACCTGCAGCCAGCAGTCCCTGCTGTCCCTACCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAGTCCTCTAACCTGCAGCCAGCAGTCCCTGCTGTCCCTACCTCA  750

seq1  ATCTGTAGCTTTTTACTTCATGCATTTAGTATTCTTCATCCTTTAGTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAGCTTTTTACTTCATGCATTTAGTATTCTTCATCCTTTAGTATT  800

seq1  CTCTCGTGCGAGATCCAGACCCTAACAGATAACAATAGATACACCAAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTGCGAGATCCAGACCCTAACAGATAACAATAGATACACCAAGGG  850

seq1  TTGCCTGGTTCTCCCTGACTTTTTTGTTTCTTTCAAGATTTA-TTTCAAT  898
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TTGCCTGGTTCTCCCTGACTTTTTTGTTTCTTTCAAGATTTATTTTCATT  900

seq1  GCCTGTGTATTGGTGTGAATATATATATGTGGGTGTGTG  937
      |||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTATTGGTGTGAATATATATATGTGGGTGTGTG  939