BAC Information

Click to search

BAC

Clone NameB6Ng01-032P08
Chromosome1 (Build37)
Map Location 82,732,380 - 82,876,465
singlet/doubletdoublet
Overlap gene5230400G24Rik, Tm4sf20, LOC100039491, Hrb
Upstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4, Col4a3
Downstream geneA030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032P08.bB6Ng01-032P08.g
ACCDH862145DH862146
length850947
definitionDH862145|Mus musculus domesticus DNA, BAC clone: B6Ng01-032P08, 5' end.DH862146|Mus musculus domesticus DNA, BAC clone: B6Ng01-032P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,875,706 - 82,876,465)(82,732,380 - 82,733,329)
sequence
gaattcatttaaatgctaccagtattagcccaattagtaatatatactaa
atacccagaaatctcccaaagtttttgtaaagggataatctattcatagt
atccttgaattgtcacagttacaacactattctaaaagactctagtaaca
aaagaaagctaattcagagccctaaatatattcctcttagtaaacaaaac
tgtggatgtcatccacaaatattctcatatattctctcgctctcactctc
gctctgctctgctctgtctctttgcgacagagtttctctgtgtagccttg
cctgtcctggaacttgctctgtagaccaggctagccccaatttttaaatt
tttaattgtatctacttgtgtatagatcaacagagggcagaagctgactc
aagtgtattccctggctgctctcttcctcctctcttttgaggcagggctc
ttcactgagcctgagcttcctgtttccacaggtgggtctgactcacacca
atctccagtctctgccgcagtgctggagtccatacacacctctgtcccca
actttcacttgtgtgctgactcaactaggtcgtgatgcttacacagcaag
cactttattcagtcacttccccagcccaatatgtcactttaaaatgacaa
tgagcttggtgaatctgaagagtaatttaaatacctaaaataatgataca
aagacctttgtatcacactaacaaaatacttttttctttttgtttgtttg
ttttgcttttgcttttagctttaagaaacaggatctcattatgtagcctg
tgttgatctctccctccctcacgaactcattcatgtcttagcttctcaag

gaattcaaaagcatcaggagatgacaacctcctttgagagtttacaaagt
aacaagagcgcagacagcatcactaccattcttacaggtaccatggtact
gtagggtacagtggtgtgggatgtgctcttatggcagcagagcgtaaata
gtcagagatggaagaggcctaatgagcgcattccctggcgtctgtaactg
tcatcgaggttctatctcaaatgtaaatttttgcttgctttgttgaaact
ccattctcttatgttgggtgcaagggaaagctgtgagggctttgattgcg
cagagagtctctcacagtggctgtagttattctaaacaatcacataagga
gaaattgggttaaaataaataatgtctcctacatgaaagactgtctgaag
gctcaaccattattaacctgattttttttaatgattgaatgtgtgttttc
ctaaggtttcagatatcaaccaacctataaaactcgattttctaaaactg
tttccaggcatgcaaacagtaaaaaagactccacaatgtaggcttatggc
taatgtgggttaaaaaacagctctaattcaatattttctacttgtactat
gtagtttttgaggcagcagaatcttttagtaggctttcctgctgtttaag
ttgtgatttgctgtatagggccataattgacttttttatatcatttaaaa
tgaaagcatggttacttcagaattgtatcaccttttcacaaagtagatac
tgttgatggctgagtctggatgtaggtaatggaaaaggctgtgtgagttc
ctaacaccagggttgatgaacacgtgattttctttgttttgtttaaattg
ccttcatggtggtttctaagatgtctaatagaaagatcttgatataataa
aggtttgcccattctctcctgccttattaaatggttctatttaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82875706_82876465
seq2: B6Ng01-032P08.b_44_803 (reverse)

seq1  AAAAGCAAAACAAACAAACAAAAAGAAAAAAGTATTTTGTTAGTGTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAACAAACAAACAAAAAGAAAAAAGTATTTTGTTAGTGTGATA  50

seq1  CAAAGGTCTTTGTATCATTATTTTAGGTATTTAAATTACTCTTCAGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTCTTTGTATCATTATTTTAGGTATTTAAATTACTCTTCAGATTC  100

seq1  ACCAAGCTCATTGTCATTTTAAAGTGACATATTGGGCTGGGGAAGTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTCATTGTCATTTTAAAGTGACATATTGGGCTGGGGAAGTGACT  150

seq1  GAATAAAGTGCTTGCTGTGTAAGCATCACGACCTAGTTGAGTCAGCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGTGCTTGCTGTGTAAGCATCACGACCTAGTTGAGTCAGCACAC  200

seq1  AAGTGAAAGTTGGGGACAGAGGTGTGTATGGACTCCAGCACTGCGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAGTTGGGGACAGAGGTGTGTATGGACTCCAGCACTGCGGCAGA  250

seq1  GACTGGAGATTGGTGTGAGTCAGACCCACCTGTGGAAACAGGAAGCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGATTGGTGTGAGTCAGACCCACCTGTGGAAACAGGAAGCTCAG  300

seq1  GCTCAGTGAAGAGCCCTGCCTCAAAAGAGAGGAGGAAGAGAGCAGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGAAGAGCCCTGCCTCAAAAGAGAGGAGGAAGAGAGCAGCCAGG  350

seq1  GAATACACTTGAGTCAGCTTCTGCCCTCTGTTGATCTATACACAAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACACTTGAGTCAGCTTCTGCCCTCTGTTGATCTATACACAAGTAGA  400

seq1  TACAATTAAAAATTTAAAAATTGGGGCTAGCCTGGTCTACAGAGCAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTAAAAATTTAAAAATTGGGGCTAGCCTGGTCTACAGAGCAAGTT  450

seq1  CCAGGACAGGCAAGGCTACACAGAGAAACTCTGTCGCAAAGAGACAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGGCAAGGCTACACAGAGAAACTCTGTCGCAAAGAGACAGAGC  500

seq1  AGAGCAGAGCGAGAGTGAGAGCGAGAGAATATATGAGAATATTTGTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGCGAGAGTGAGAGCGAGAGAATATATGAGAATATTTGTGGAT  550

seq1  GACATCCACAGTTTTGTTTACTAAGAGGAATATATTTAGGGCTCTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCACAGTTTTGTTTACTAAGAGGAATATATTTAGGGCTCTGAATT  600

seq1  AGCTTTCTTTTGTTACTAGAGTCTTTTAGAATAGTGTTGTAACTGTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTTTTGTTACTAGAGTCTTTTAGAATAGTGTTGTAACTGTGACA  650

seq1  ATTCAAGGATACTATGAATAGATTATCCCTTTACAAAAACTTTGGGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGATACTATGAATAGATTATCCCTTTACAAAAACTTTGGGAGAT  700

seq1  TTCTGGGTATTTAGTATATATTACTAATTGGGCTAATACTGGTAGCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTATTTAGTATATATTACTAATTGGGCTAATACTGGTAGCATTT  750

seq1  AAATGAATTC  760
      ||||||||||
seq2  AAATGAATTC  760

seq1: chr1_82732380_82733329
seq2: B6Ng01-032P08.g_67_1013

seq1  GAATTCAAAAGCATCAGGAGATGACAACCTCCTTTGAGAGTTTACAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGCATCAGGAGATGACAACCTCCTTTGAGAGTTTACAAAGT  50

seq1  AACAAGAGCGCAGACAGCATCACTACCATTCTTACAGGTACCATGGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGCGCAGACAGCATCACTACCATTCTTACAGGTACCATGGTACT  100

seq1  GTAGGGTACAGTGGTGTGGGATGTGCTCTTATGGCAGCAGAGCGTAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTACAGTGGTGTGGGATGTGCTCTTATGGCAGCAGAGCGTAAATA  150

seq1  GTCAGAGATGGAAGAGGCCTAATGAGCGCATTCCCTGGCGTCTGTAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGATGGAAGAGGCCTAATGAGCGCATTCCCTGGCGTCTGTAACTG  200

seq1  TCATCGAGGTTCTATCTCAAATGTAAATTTTTGCTTGCTTTGTTGAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGAGGTTCTATCTCAAATGTAAATTTTTGCTTGCTTTGTTGAAACT  250

seq1  CCATTCTCTTATGTTGGGTGCAAGGGAAAGCTGTGAGGGCTTTGATTGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCTTATGTTGGGTGCAAGGGAAAGCTGTGAGGGCTTTGATTGCG  300

seq1  CAGAGAGTCTCTCACAGTGGCTGTAGTTATTCTAAACAATCACATAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTCTCTCACAGTGGCTGTAGTTATTCTAAACAATCACATAAGGA  350

seq1  GAAATTGGGTTAAAATAAATAATGTCTCCTACATGAAAGACTGTCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGGTTAAAATAAATAATGTCTCCTACATGAAAGACTGTCTGAAG  400

seq1  GCTCAACCATTATTAACCTGATTTTTTTTAATGATTGAATGTGTGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACCATTATTAACCTGATTTTTTTTAATGATTGAATGTGTGTTTTC  450

seq1  CTAAGGTTTCAGATATCAACCAACCTATAAAACTCGATTTTCTAAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTTCAGATATCAACCAACCTATAAAACTCGATTTTCTAAAACTG  500

seq1  TTTCCAGGCATGCAAACAGTAAAAAAGACTCCACAATGTAGGCTTATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGCATGCAAACAGTAAAAAAGACTCCACAATGTAGGCTTATGGC  550

seq1  TAATGTGGGTTAAAAAACAGCTCTAATTCAATATTTTCTACTTGTACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGGGTTAAAAAACAGCTCTAATTCAATATTTTCTACTTGTACTAT  600

seq1  GTAGTTTTTGAGGCAGCAGAATCTTTTAGTAGGCTTTCCTGCTGTTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTTGAGGCAGCAGAATCTTTTAGTAGGCTTTCCTGCTGTTTAAG  650

seq1  TTGTGATTTGCTGTATAGGGCCATAATTGAC-TTTTTATATCA-TTAAAA  698
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TTGTGATTTGCTGTATAGGGCCATAATTGACTTTTTTATATCATTTAAAA  700

seq1  TGAAAGCATGGTTACTTCAGAATTGTATCACCTTTTCACAAAGTAGATAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCATGGTTACTTCAGAATTGTATCACCTTTTCACAAAGTAGATAC  750

seq1  TGTTGATGGCTGAGTCTGGATGTAGGTAATGGAAAAGGCTGTGTGAGTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGGCTGAGTCTGGATGTAGGTAATGGAAAAGGCTGTGTGAGTTC  800

seq1  CTAACACCAGCGGTTGATGAACACGTGATTTTCCTTTGTTTTGTTTAAAT  848
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  CTAACACCAG-GGTTGATGAACACGTGATTTT-CTTTGTTTTGTTTAAAT  848

seq1  TGCCTTCATGGTGGTTTCT-AGATGTCTAATAAGAAAGATCTTGATATTA  897
      ||||||||||||||||||| ||||||||||| ||||||||||||||| ||
seq2  TGCCTTCATGGTGGTTTCTAAGATGTCTAAT-AGAAAGATCTTGATA-TA  896

seq1  ATAAAGGTTTGCCCATTCTTCTCCTGCCATTATTAATTGTTTCTATTTAA  947
      |||||||||||||||||| ||||||||| ||||||| || ||||||||||
seq2  ATAAAGGTTTGCCCATTC-TCTCCTGCC-TTATTAAATGGTTCTATTTAA  944

seq1  AGC  950
      |||
seq2  AGC  947