BAC Information

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BAC

Clone NameB6Ng01-035D05
Chromosome1 (Build37)
Map Location 183,396,009 - 183,545,440
singlet/doubletdoublet
Overlap geneCcdc121
Upstream gene6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3
Downstream geneA230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035D05.bB6Ng01-035D05.g
ACCDH863735DH863736
length1,005763
definitionDH863735|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D05, 5' end.DH863736|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(183,396,009 - 183,397,025)(183,544,811 - 183,545,440)
sequence
gaattctgcccttatgggcaactcttaggatgctattttattttcctata
gtcaggtgggaaatgatccttaggttgaggtaaccctaagctccataaaa
cttctctaagaagtggagggtacccagcaggtagatcagatccccggaag
atggtgtgtggagccctgtgcctggactagccagctttgttattaaggaa
tatttcaagactgtatttaaacaaccaagccctaagaggtagaacttgcc
catctgtgtcaaaactccatggcataaaaattacccataagactctgcag
cagccctggcaccaaccctgtctaactataagaaaaagagcacagatggg
attttccatttaagacacgtgtcaccttgctctgggttggttacttggaa
acaacataagctttcagtggagcaggtgaggagggtgaacccatgccaga
ctcgggcacagcagcatttggatgttggcactgtccgggatacttagcca
aggtgactcgatagtgctgtctcacggcgtaacctcaccctaaggtgaat
ggtcctcctgaatggacatcatcgggccttgtactcgacctctcccgctc
actgtttgcgtatgagcacagccaatcagtacagggcaggcattagatca
ggccaggaaaagggaggcatgagaaaaatgtcagaagcccagatgtactt
caagaaataggacactataacagaagtctgaacactggggcttaaaggaa
gcagcacacacaaagtctgaggactacagtaggctggagtggtgaccggg
ttgagtggggagtgtggatagccacacagctcatgcatttaacagtgcca
tctgccttcctcagtaccacgagtccgtaccccctcccccattactaaaa
ggctggaacgagtcccagctggggcctttgctccactgctccctgtgagg
agcttgttcactcaagctcgttctggaggagacgctgagaatggtgggag
tagtc
gaattcatataacagtaagaaagagagaaagagagaaaggaaggaaggaa
ggaaggaaagaaggaaaagagagagagagagagaggaagaaaagaagaaa
gagaacaaacaaagtaagttaaaaaatggagaaagggctgagatgaggct
cagtcagcagtgttcagcttgtaagtgtgaagacctgcgtttgagccatc
agaaagcacataacagccaggcatggctacaacatatctgcactctcaac
gatgacacaaataggagggtgaaacagacccctggatgctcgcaggccag
ctaacctggcctacatgctcagatttctggccagtaaaagaccttgtcac
acataaaaaggggcaaggtacctgaggacaattatccaaggttgtcctct
gacctctgaccatggaccctgacacacatccacatccacacccaaacaca
ggcatacaaatagggaatgaaaacaattttactggccctttctccaaaga
catacaagtggatgataagtataagaaaagatgcttaagggctggagaga
tggctcagcgattaagagcattggctgctcttccagatgtcctgagttca
attcccagcaaccagatggtggctcacaccatctgtaatgggatccaatg
gcctcttccagtgtgtctgaagatggctaaagtgtactgagataaataaa
ataaatcttaaaaaaaagaaaagaaaagaaaagatgcttaaaatcactga
caataagaaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_183396009_183397025
seq2: B6Ng01-035D05.b_48_1052

seq1  GAATTCTGCCCTTATGGGCAACTCTTAGGATGCTATTTTATTTTCCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTTATGGGCAACTCTTAGGATGCTATTTTATTTTCCTATA  50

seq1  GTCAGGTGGGAAATGATCCTTAGGTTGAGGTAACCCTAAGCTCCATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGGGAAATGATCCTTAGGTTGAGGTAACCCTAAGCTCCATAAAA  100

seq1  CTTCTCTAAGAAGTGGAGGGTACCCAGCAGGTAGATCAGATCCCCGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAAGAAGTGGAGGGTACCCAGCAGGTAGATCAGATCCCCGGAAG  150

seq1  ATGGTGTGTGGAGCCCTGTGCCTGGACTAGCCAGCTTTGTTATTAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGTGGAGCCCTGTGCCTGGACTAGCCAGCTTTGTTATTAAGGAA  200

seq1  TATTTCAAGACTGTATTTAAACAACCAAGCCCTAAGAGGTAGAACTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAGACTGTATTTAAACAACCAAGCCCTAAGAGGTAGAACTTGCC  250

seq1  CATCTGTGTCAAAACTCCATGGCATAAAAATTACCCATAAGACTCTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGTCAAAACTCCATGGCATAAAAATTACCCATAAGACTCTGCAG  300

seq1  CAGCCCTGGCACCAACCCTGTCTAACTATAAGAAAAAGAGCACAGATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGGCACCAACCCTGTCTAACTATAAGAAAAAGAGCACAGATGGG  350

seq1  ATTTTCCATTTAAGACACGTGTCACCTTGCTCTGGGTTGGTTACTTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATTTAAGACACGTGTCACCTTGCTCTGGGTTGGTTACTTGGAA  400

seq1  ACAACATAAGCTTTCAGTGGAGCAGGTGAGGAGGGTGAACCCATGCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATAAGCTTTCAGTGGAGCAGGTGAGGAGGGTGAACCCATGCCAGA  450

seq1  CTCGGGCACAGCAGCATTTGGATGTTGGCACTGTCCGGGATACTTAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGCACAGCAGCATTTGGATGTTGGCACTGTCCGGGATACTTAGCCA  500

seq1  AGGTGACTCGATAGTGCTGTCTCACGGCGTAACCTCACCCTAAGGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTCGATAGTGCTGTCTCACGGCGTAACCTCACCCTAAGGTGAAT  550

seq1  GGTCCTCCTGAATGGACATCATCGGGCCTTGTACTCGACCTCTCCCGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCCTGAATGGACATCATCGGGCCTTGTACTCGACCTCTCCCGCTC  600

seq1  ACTGTTTGCGTATGAGCACAGCCAATCAGTACAGGGCAGGCATTAGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGCGTATGAGCACAGCCAATCAGTACAGGGCAGGCATTAGATCA  650

seq1  GGCCAGGAAAAGGGAGGCATGAGAAAAATGTCAGAAGCCCAGATGTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAAAAGGGAGGCATGAGAAAAATGTCAGAAGCCCAGATGTACTT  700

seq1  CAAGAAATAGGACACTATAAACAGAAGGTCTGAACACT-GGGCTTAAAGG  749
      |||||||||||||||||| ||||||| ||||||||||| |||||||||||
seq2  CAAGAAATAGGACACTAT-AACAGAA-GTCTGAACACTGGGGCTTAAAGG  748

seq1  AAGCAGCAACACACAAAAGTCTGAGGACTACAGTAGGCTGGAGTGGTGAC  799
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  AAGCAGC-ACACAC-AAAGTCTGAGGACTACAGTAGGCTGGAGTGGTGAC  796

seq1  CGGGTTGAGTGGGGAGTGTGGATAGCCACACAGCTCATGCATTTAACAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTGAGTGGGGAGTGTGGATAGCCACACAGCTCATGCATTTAACAGT  846

seq1  GCCATCTGCCTTCCTCAAGTACCACAGAGTCCGTACCCCCTCCCCCATTA  899
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  GCCATCTGCCTTCCTC-AGTACCAC-GAGTCCGTACCCCCTCCCCCATTA  894

seq1  CTAAAAGGCTGGAACGAGTCCCAGCTGGGGCCCTTTGCTTCACTGGCTCA  949
      |||||||||||||||||||||||||||||| |||||||| |||| |||| 
seq2  CTAAAAGGCTGGAACGAGTCCCAGCTGGGG-CCTTTGCTCCACT-GCTCC  942

seq1  CTGTGAGGAGCTTGTTCAACTCAAGCTCCGTGCTTGGGAAGAGACGCTGA  999
      ||||||||||||||||| ||||||||| ||| ||  ||| ||||||||||
seq2  CTGTGAGGAGCTTGTTC-ACTCAAGCT-CGTTCT--GGAGGAGACGCTGA  988

seq1  GAATGTGGTGTAGTAGTC  1017
      ||||| |  | |||||||
seq2  GAATG-GTGGGAGTAGTC  1005

seq1: chr1_183544811_183545440
seq2: B6Ng01-035D05.g_66_695 (reverse)

seq1  GTTGTGAGCCACCATCTGGTTGCTGGGAATTGAACTCAGGACATCTGGAA  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAGCCACCATCTGGTTGCTGGGAATTGAACTCAGGACATCTGGAA  50

seq1  GAGCAGCCAATGCTCTTAATCGCTGAGCCATCTCTCCAGCCCTTAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCAATGCTCTTAATCGCTGAGCCATCTCTCCAGCCCTTAAGCAT  100

seq1  CTTTTCTTATACTTATCATCCACTTGTATGTCTTTGGAGAAAGGGCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTATACTTATCATCCACTTGTATGTCTTTGGAGAAAGGGCCAGT  150

seq1  AAAATTGTTTTCATTCCCTATTTGTATGCCTGTGTTTGGGTGTGGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTTTTCATTCCCTATTTGTATGCCTGTGTTTGGGTGTGGATGTG  200

seq1  GATGTGTGTCAGGGTCCATGGTCAGAGGTCAGAGGACAACCTTGGATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGTCAGGGTCCATGGTCAGAGGTCAGAGGACAACCTTGGATAAT  250

seq1  TGTCCTCAGGTACCTTGCCCCTTTTTATGTGTGACAAGGTCTTTTACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAGGTACCTTGCCCCTTTTTATGTGTGACAAGGTCTTTTACTGG  300

seq1  CCAGAAATCTGAGCATGTAGGCCAGGTTAGCTGGCCTGCGAGCATCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATCTGAGCATGTAGGCCAGGTTAGCTGGCCTGCGAGCATCCAGG  350

seq1  GGTCTGTTTCACCCTCCTATTTGTGTCATCGTTGAGAGTGCAGATATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTTTCACCCTCCTATTTGTGTCATCGTTGAGAGTGCAGATATGTT  400

seq1  GTAGCCATGCCTGGCTGTTATGTGCTTTCTGATGGCTCAAACGCAGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCATGCCTGGCTGTTATGTGCTTTCTGATGGCTCAAACGCAGGTCT  450

seq1  TCACACTTACAAGCTGAACACTGCTGACTGAGCCTCATCTCAGCCCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTACAAGCTGAACACTGCTGACTGAGCCTCATCTCAGCCCTTTC  500

seq1  TCCATTTTTTAACTTACTTTGTTTGTTCTCTTTCTTCTTTTCTTCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTTAACTTACTTTGTTTGTTCTCTTTCTTCTTTTCTTCCTCTC  550

seq1  TCTCTCTCTCTCTTTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTTTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTTCTCTC  600

seq1  TTTCTCTCTTTCTTACTGTTATATGAATTC  630
      ||||||||||||||||||||||||||||||
seq2  TTTCTCTCTTTCTTACTGTTATATGAATTC  630