BAC Information

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BAC

Clone NameB6Ng01-035J22
Chromosome15 (Build37)1 (Build37)
Map Location 6,087,121 - 6,087,848188,684,857 - 188,685,818
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
Downstream geneDab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035J22.bB6Ng01-035J22.g
ACCDH864037DH864038
length1,039938
definitionDH864037|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J22, 5' end.DH864038|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,087,121 - 6,087,848)(188,684,857 - 188,685,818)
sequence
gaattccaaacttgtcaggagccataatgggacaagctaataactagcag
gtgatcatcctgaagtggcctgcctcggattattatataatctgcgacag
gtgagccctcattaagcaaagctgcaaagaactcattttaggaaagattc
ctgctattaatacgcttttcctgttattattaaacatatataacaatcac
taagtaggaacacaccccctttggagcagatctctgcagatccatgaaga
tgtactgtcttgtagtgatgctgtatagacaaatagacgacttaagtctt
aatgatgatcctataagaatttctaaaattatatctgtgattattaagct
cttttataatgggactgctactaggtccttttctgatagtcaaggccgca
atgagaactctgtcagtcccccaagtgtcaccagttaattgctcttagat
ggtaaccagactttctcctactcagagcacattccaaaaggttgtgaaac
aattaaccaaaggtcattaaaagggaactaatgatttattataagtgtta
ggagagaagataaagtatcaactcggttgatcgatacaaaacttcactaa
tcacttagttatggttttaaaccttcaactcatttgtggagctgagacag
gtgatggatgtttagccagataattactcctaatggatatgcatgtaaac
attctttgttgtaaacttctatctcaattatgatttgatttttagtgtga
acttgtgatgaactttgtaacatgtgatcattctgaaagatgtataagta
ctgaggacaaagagatcacagaactagatcatagaggagaccttttcgcc
tttccccacttagactagatcttttccctttcccactagatcttgtgctt
tccctagttttccctagtaaaaggaaagtttctatgaacttttacactag
tatagcttttatcacttctctatgtctttccttctgggactcactagcag
caagttagagccagcagttcttggcggagatagacaaag
gaattctttcctctctgacatcattttgatttttctagttttcctttaag
tggcaagtgtctccatgtgctgtgaccccccgcaatcactgcagctgcaa
gccctccatgcaccgctaaagctgtgggtttgtttttggacttcagttaa
ggcgatgattggcacataattaccaatgaccagaaaagaatggactgtga
tttcagaatcatcttcttgaagctattgaatgattttcatcaagaaaatt
tcccaacggcaggatctatagtaaacatgctatggtaaccagtgacaacc
cgagcaaaaattgagttgttaggctaagtcccttgtggctgtcttcccag
ctgtttatctctctgttcccacaactgagtgtcatattctttctcttgtc
tgggaagtggtttcttacatatcttcaggtaaaaaccaccaagatttaaa
tgtaatgagtgtttccatttgaatagaaaagaatttgcatgaaaacttta
gaggaatgattttgaactcgaagctctgtgtgtgtgaatcaaagtctttg
taggacgaatgagacactgtggtcctggaaaagaaatcccacaggggatc
aggagatggggttttcccctcagactcgctcattattgtcatttttgttt
tgagacaggactggactctgtggctcaagatgacttcacacttgaggcaa
ttctcttgcttcatcatctcaggtttgggatgacaggaatggaccaccgt
gcctggcacgtgtctgctctcatgctagagattgtggtgcagtgggtaga
cagtctgtgtcctccctcagagagtgtgttgacaccctatcccatctatg
ctagctagactgagtctctacgatactagggacatgggcaagcctcgaga
tgatactatgcctctgagaatccacatgctgactatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_6087121_6087848
seq2: B6Ng01-035J22.b_401_1084

seq1  ATAATGGGACTGCTATTAGGTCCTTTTCTGATAGTCAAAGCTGCAATGAG  50
      ||||||||||||||| |||||||||||||||||||||| || ||||||||
seq2  ATAATGGGACTGCTACTAGGTCCTTTTCTGATAGTCAAGGCCGCAATGAG  50

seq1  AACTCTGCCAGTCTCTCAAGTATCACCAGTTAATTGCTCTTAGATGGTAA  100
      ||||||| ||||| | ||||| ||||||||||||||||||||||||||||
seq2  AACTCTGTCAGTCCCCCAAGTGTCACCAGTTAATTGCTCTTAGATGGTAA  100

seq1  CCAGACTTTCTCCTACCCAGAGCACATTCCAAGATGTTGTAAAACAATTA  150
      |||||||||||||||| ||||||||||||||| | ||||| |||||||||
seq2  CCAGACTTTCTCCTACTCAGAGCACATTCCAAAAGGTTGTGAAACAATTA  150

seq1  ACCAAAGATCATTAAAAAGGAACTAATGATTTATTATAGGTGTTAAGACA  200
      ||||||| ||||||||| |||||||||||||||||||| |||||| || |
seq2  ACCAAAGGTCATTAAAAGGGAACTAATGATTTATTATAAGTGTTAGGAGA  200

seq1  GAAGATAAAATATCTACTGGGTTTATCTATACAAAACTTCACTAATAACT  250
      ||||||||| |||| ||| |||| ||| |||||||||||||||||| |||
seq2  GAAGATAAAGTATCAACTCGGTTGATCGATACAAAACTTCACTAATCACT  250

seq1  TAGTTATGGTTTTAATCCTTCAGTGAAGCTATGGAACTCAGACAGGTAAT  300
      ||||||||||||||| ||||||    |  | |||| || |||||||| ||
seq2  TAGTTATGGTTTTAAACCTTCAACTCATTTGTGGAGCTGAGACAGGTGAT  300

seq1  GGATGTTTAGCTAGATAATTACTCCTGAT-GATATGCATGTAAACATTCA  349
      ||||||||||| |||||||||||||| || ||||||||||||||||||| 
seq2  GGATGTTTAGCCAGATAATTACTCCTAATGGATATGCATGTAAACATTCT  350

seq1  CTGTTGTAAACCTCTATTTCAATTTATGATTTGATTTCTTTGTGTGAACT  399
       |||||||||| ||||| |||| |||||||||||||| || |||||||||
seq2  TTGTTGTAAACTTCTATCTCAA-TTATGATTTGATTT-TTAGTGTGAACT  398

seq1  TGTGATGAACTTTGTAACATGTAATCATGTATTCTGAAATATGTATAAGT  449
      |||||||||||||||||||||| |||    ||||||||| ||||||||||
seq2  TGTGATGAACTTTGTAACATGTGATC----ATTCTGAAAGATGTATAAGT  444

seq1  ACTGAGGACAAAGAGATCACAGAACTAAGATCAATAGAGGAGACTTTTT-  498
      |||||||||||||||||||||||||| ||||| ||||||||||| |||| 
seq2  ACTGAGGACAAAGAGATCACAGAACT-AGATC-ATAGAGGAGACCTTTTC  492

seq1  -CCTTTCCCCACTTAGACTAGACTCTTTTCCCTTTCCCCACTTAGAGAAT  547
       ||||||||||||||||||||| |||||||||||| ||||||   || ||
seq2  GCCTTTCCCCACTTAGACTAGA-TCTTTTCCCTTT-CCCACT---AG-AT  536

seq1  GTTTCCCTTTCCCTCTGCTTAGGATCTCTTTGCTTTTTCCCTTAGATAGC  597
       ||   |||||||      |||            |||||||     ||| 
seq2  CTTGTGCTTTCCC------TAG------------TTTTCCC-----TAG-  562

seq1  TTTCATAGGAAACTTTTTA-AAACTT----ACTAATAAACACTATAATCA  642
        | | |||||| ||| ||  |||||    |||| || |  || | ||||
seq2  --TAAAAGGAAAGTTTCTATGAACTTTTACACTAGTATA-GCTTTTATCA  609

seq1  CTTCTGCACGTGTCTTCTCTTCCTGTGACTTCCTACTAGCAGGCTGAAAG  692
      |||||  |  |||||| || | ||| ||||    |||||||    | |||
seq2  CTTCTCTA--TGTCTT-TCCTTCTGGGACT---CACTAGCA----GCAAG  649

seq1  TTAGAGCCCAGCAGATAAT-GCTGAGATAGAACAAAG  728
      |||||| ||||||| |  | || ||||||| ||||||
seq2  TTAGAG-CCAGCAGTTCTTGGCGGAGATAG-ACAAAG  684

seq1: chr1_188684857_188685818
seq2: B6Ng01-035J22.g_66_1003

seq1  GAATTCTTTCCTCTCTGACATCATTTTGATTTTTCTAGTTTTCCTTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTCTCTGACATCATTTTGATTTTTCTAGTTTTCCTTTAAG  50

seq1  TGGCAAGTGTCTCCATGTGCTGTGACCCCCCGCAATCACTGCAGCTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTGTCTCCATGTGCTGTGACCCCCCGCAATCACTGCAGCTGCAA  100

seq1  GCCCTCCATGCACCGCTAAAGCTGTGGGTTTGTTTTTGGACTTCAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCATGCACCGCTAAAGCTGTGGGTTTGTTTTTGGACTTCAGTTAA  150

seq1  GGCGATGATTGGCACATAATTACCAATGACCAGAAAAGAATGGACTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATGATTGGCACATAATTACCAATGACCAGAAAAGAATGGACTGTGA  200

seq1  TTTCAGAATCATCTTCTTGAAGCTATTGAATGATTTTCATCAAGAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAATCATCTTCTTGAAGCTATTGAATGATTTTCATCAAGAAAATT  250

seq1  TCCCAACGGCAGGATCTATAGTAAACATGCTATGGTAACCAGTGACAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACGGCAGGATCTATAGTAAACATGCTATGGTAACCAGTGACAACC  300

seq1  CGAGCAAAAATTGAGTTGTTAGGCTAAGTCCCTTGTGGCTGTCTTCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAAAAATTGAGTTGTTAGGCTAAGTCCCTTGTGGCTGTCTTCCCAG  350

seq1  CTGTTTATCTCTCTGTTCCCACAACTGAGTGTCATATTCTTTCTCTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATCTCTCTGTTCCCACAACTGAGTGTCATATTCTTTCTCTTGTC  400

seq1  TGGGAAGTGGTTTCTTACATATCTTCAGGTAAAAACCACCAAGATTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTGGTTTCTTACATATCTTCAGGTAAAAACCACCAAGATTTAAA  450

seq1  TGTAATGAGTGTTTCCATTTGAATAGAAAAGAATTTGCATGAAAACTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGAGTGTTTCCATTTGAATAGAAAAGAATTTGCATGAAAACTTTA  500

seq1  GAGGAATGATTTTGAACTCGAAGCTCTGTGTGTGTGAATCAAAGTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGATTTTGAACTCGAAGCTCTGTGTGTGTGAATCAAAGTCTTTG  550

seq1  TAGGACGAATGAGACACTGTGGTCCTGGAAAAGAAATCCCACAGGGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACGAATGAGACACTGTGGTCCTGGAAAAGAAATCCCACAGGGGATC  600

seq1  AGGAGATGGGGTTTTCCCCTCAGACTCGCTCATTATTGTCATTTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGGGGTTTTCCCCTCAGACTCGCTCATTATTGTCATTTTTGTTT  650

seq1  TGAGACAGGACTGGACTCTGTGGCTCAAGATGACTTCACACTTGAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGACTGGACTCTGTGGCTCAAGATGACTTCACACTTGAGGCAA  700

seq1  TTCTCTTGCTTCATCATCTCAGGGTTTGGGATGACAGGAATGGACCACCG  750
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCTCTTGCTTCATCATCTCA-GGTTTGGGATGACAGGAATGGACCACCG  749

seq1  TGCCTGGCACGTGGTCTGCTCTTCATGCTAGAGATTGTTGGTGCAAGTGG  800
      |||||||||||| |||||||| ||||||||||||||| |||||| |||||
seq2  TGCCTGGCACGT-GTCTGCTC-TCATGCTAGAGATTG-TGGTGC-AGTGG  795

seq1  GTAGACAGTCTGTGTCCTCCCTCAGAAGAGTGTGTTGACACCCTAATCCC  850
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  GTAGACAGTCTGTGTCCTCCCTCAG-AGAGTGTGTTGACACCCT-ATCCC  843

seq1  AATCTAATGCTAGCTAGACCTGAGGTCTCCTACAGATAACTAGGGAACAT  900
       |||| |||||||||||| |||| |||| |||| ||| ||||||| ||||
seq2  -ATCT-ATGCTAGCTAGA-CTGA-GTCT-CTAC-GAT-ACTAGGG-ACAT  885

seq1  GGGCAAAGCCCTCCGAGATGATACTAATGCCCTTCTGAAGAAATTCCACA  950
      |||| |||||   |||||||||||| |||||  |||| ||||  ||||||
seq2  GGGC-AAGCC--TCGAGATGATACT-ATGCC--TCTG-AGAA--TCCACA  926

seq1  TGCTGACTATCC  962
      ||||||||||||
seq2  TGCTGACTATCC  938