BAC Information

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BAC

Clone NameB6Ng01-035K01
Chromosome1 (Build37)
Map Location 80,075,161 - 80,220,126
singlet/doubletdoublet
Overlap geneLOC100039325, A830043J08Rik
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
Downstream gene2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035K01.bB6Ng01-035K01.g
ACCDH864043DH864044
length704940
definitionDH864043|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K01, 5' end.DH864044|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,219,422 - 80,220,126)(80,075,161 - 80,076,095)
sequence
gaattcttcaacactaatttttctctcaaattgccctgttgtcctaaata
tcacgtatcattagcctgtttgagccaggagccagtcatggtcctgcacc
aagttattctgtctcaggtctcttttcagttttctcccccagcctccacc
tccttgagttggtaaagtgcttcagcagcctgacctgtaacacttggtct
cgctttattacatactctaatatcccgaattcctctagagcacttggtgt
tgtagatagggtcattatacacacggagagagcctactatcaaaacttga
atttgtcatgaactattgagaaaatgccatccactagtcagcaggtactg
gctaggtgttatttctatgaaccaggaggtgcgtccacttaactgtatct
agttcccattgaccccatatcacccatctaccttcttagctttgtgtgtt
cttgactcagagtcagaaaattggttaaggtcccatctagctgatgagct
cagtcacatgtcatagtaacagcagtctgtctcttcctccccctatcacc
aagcttttccaaaaggctcttagcaaactgtgttcttggagcctctggat
tggagatagagccatgcgtaaagaggcttctattcttttttatgatttat
atatatatatatgtatatatctatatatatatatatatatatatatatga
taca
gaattcaaccattttcagacagaacacacttgaaaatgaaaagttgaatt
gcgtaaaggctcctttcctgccactcttctctgaacaatatggtgcagct
gtttacaaagcatggacaccactgtggtttctaaaagtaatgttgaaata
attgaaaggctatagaagcaaggtcataggttatgcgcacatactaggct
ggttcatgtaaggagaccgagcaggcaatgatcctggaacccatcctcca
cagatggctgcgcttttatgattccacttgtgctcggggatccctagttt
tgccttcacagagcagttctgcatccaatgaacagctaaagagttgcgag
agatacagaaggtgatgagatgaagtgaaaagaaatgaaataaaatgaaa
tgcaatcctcctttatgagcttgtcttctcatatgcaattaagacttccc
tactgtgggatttaaaagaggggaataggcacacaagagcagatgctgca
aatgacaggatcttaaataccagttagcaggaaaatcagccccaagaacc
cagctcctggctcccactcggagattcaggggtggggccaagagcattgt
taacacacattccaggtcatcttgatgcatgaggtctttggtctggattt
tgagaagttctcatggagctggacatcatatctgtggtggatggcccaat
ggataaagtacttgctgagtgagcataaaaacctgagttcattttcccag
gcataggtggaatgacttcttggggttcagtggggagactcagtcctcaa
aaaacttaaggtggagagttaatataggaaaacatctggcattgactttt
ggctcctcatgaatttgtatataggtatgtatacataataattattgcat
agtataattagtatattataaacaaatggggatacatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80219422_80220126
seq2: B6Ng01-035K01.b_34_737 (reverse)

seq1  TGTACTCATATATATATATATATATATATATATATATATATATATATATA  50
      |||| ||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TGTA-TCATATATATATATATATATATATATATAGATATATACATATATA  49

seq1  TATA-ATAAATCATAAAAAAAGAATAGAAGCCTCTTTACGCATGGCTCTA  99
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATATATAAATCAT-AAAAAAGAATAGAAGCCTCTTTACGCATGGCTCTA  98

seq1  TCTCCAATCCAGAGGCTCCAAGAACACAGTTTGCTAAGAGCCTTTTGGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAATCCAGAGGCTCCAAGAACACAGTTTGCTAAGAGCCTTTTGGAA  148

seq1  AAGCTTGGTGATAGGGGGAGGAAGAGACAGACTGCTGTTACTATGACATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGGTGATAGGGGGAGGAAGAGACAGACTGCTGTTACTATGACATG  198

seq1  TGACTGAGCTCATCAGCTAGATGGGACCTTAACCAATTTTCTGACTCTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGCTCATCAGCTAGATGGGACCTTAACCAATTTTCTGACTCTGA  248

seq1  GTCAAGAACACACAAAGCTAAGAAGGTAGATGGGTGATATGGGGTCAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAACACACAAAGCTAAGAAGGTAGATGGGTGATATGGGGTCAATG  298

seq1  GGAACTAGATACAGTTAAGTGGACGCACCTCCTGGTTCATAGAAATAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAGATACAGTTAAGTGGACGCACCTCCTGGTTCATAGAAATAACA  348

seq1  CCTAGCCAGTACCTGCTGACTAGTGGATGGCATTTTCTCAATAGTTCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCAGTACCTGCTGACTAGTGGATGGCATTTTCTCAATAGTTCATG  398

seq1  ACAAATTCAAGTTTTGATAGTAGGCTCTCTCCGTGTGTATAATGACCCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCAAGTTTTGATAGTAGGCTCTCTCCGTGTGTATAATGACCCTA  448

seq1  TCTACAACACCAAGTGCTCTAGAGGAATTCGGGATATTAGAGTATGTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACACCAAGTGCTCTAGAGGAATTCGGGATATTAGAGTATGTAAT  498

seq1  AAAGCGAGACCAAGTGTTACAGGTCAGGCTGCTGAAGCACTTTACCAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGAGACCAAGTGTTACAGGTCAGGCTGCTGAAGCACTTTACCAACT  548

seq1  CAAGGAGGTGGAGGCTGGGGGAGAAAACTGAAAAGAGACCTGAGACAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGTGGAGGCTGGGGGAGAAAACTGAAAAGAGACCTGAGACAGAA  598

seq1  TAACTTGGTGCAGGACCATGACTGGCTCCTGGCTCAAACAGGCTAATGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGGTGCAGGACCATGACTGGCTCCTGGCTCAAACAGGCTAATGAT  648

seq1  ACGTGATATTTAGGACAACAGGGCAATTTGAGAGAAAAATTAGTGTTGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGATATTTAGGACAACAGGGCAATTTGAGAGAAAAATTAGTGTTGAA  698

seq1  GAATTC  705
      ||||||
seq2  GAATTC  704

seq1: chr1_80075161_80076095
seq2: B6Ng01-035K01.g_59_998

seq1  GAATTCAACCATTTTCAGACAGAACACACTTGAAAATGAAAAGTTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCATTTTCAGACAGAACACACTTGAAAATGAAAAGTTGAATT  50

seq1  GCGTAAAGGCTCCTTTCCTGCCACTCTTCTCTGAACAATATGGTGCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAAAGGCTCCTTTCCTGCCACTCTTCTCTGAACAATATGGTGCAGCT  100

seq1  GTTTACAAAGCATGGACACCACTGTGGTTTCTAAAAGTAATGTTGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAAAGCATGGACACCACTGTGGTTTCTAAAAGTAATGTTGAAATA  150

seq1  ATTGAAAGGCTATAGAAGCAAGGTCATAGGTTATGCGCACATACTAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGGCTATAGAAGCAAGGTCATAGGTTATGCGCACATACTAGGCT  200

seq1  GGTTCATGTAAGGAGACCGAGCAGGCAATGATCCTGGAACCCATCCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGTAAGGAGACCGAGCAGGCAATGATCCTGGAACCCATCCTCCA  250

seq1  CAGATGGCTGCGCTTTTATGATTCCACTTGTGCTCGGGGATCCCTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCTGCGCTTTTATGATTCCACTTGTGCTCGGGGATCCCTAGTTT  300

seq1  TGCCTTCACAGAGCAGTTCTGCATCCAATGAACAGCTAAAGAGTTGCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCACAGAGCAGTTCTGCATCCAATGAACAGCTAAAGAGTTGCGAG  350

seq1  AGATACAGAAGGTGATGAGATGAAGTGAAAAGAAATGAAATAAAATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAGAAGGTGATGAGATGAAGTGAAAAGAAATGAAATAAAATGAAA  400

seq1  TGCAATCCTCCTTTATGAGCTTGTCTTCTCATATGCAATTAAGACTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCCTCCTTTATGAGCTTGTCTTCTCATATGCAATTAAGACTTCCC  450

seq1  TACTGTGGGATTTAAAAGAGGGGAATAGGCACACAAGAGCAGATGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGGATTTAAAAGAGGGGAATAGGCACACAAGAGCAGATGCTGCA  500

seq1  AATGACAGGATCTTAAATACCAGTTAGCAGGAAAATCAGCCCCAAGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGGATCTTAAATACCAGTTAGCAGGAAAATCAGCCCCAAGAACC  550

seq1  CAGCTCCTGGCTCCCACTCAGGAGATTCAGGGGTGGGGCCAAGAGCATTG  600
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGCTCCTGGCTCCCACTC-GGAGATTCAGGGGTGGGGCCAAGAGCATTG  599

seq1  TTAACACACATTCCAGGTCATCTTGATGCATGAGGTCTTTGGTCTGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACACATTCCAGGTCATCTTGATGCATGAGGTCTTTGGTCTGGATT  649

seq1  TTGAGAAGTTCTCATGGAGCTGGACATCATATCTGT-GTGGATGGCCCAA  699
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGAGAAGTTCTCATGGAGCTGGACATCATATCTGTGGTGGATGGCCCAA  699

seq1  TGGATAAAGTACTTGCTGAGTGAGCATAAAAACCTGAGTTCATATTCCCA  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGATAAAGTACTTGCTGAGTGAGCATAAAAACCTGAGTTCATTTTCCCA  749

seq1  -GCATAGGTGGAATGAC-TCTT-GGGTCCAGT-GAGAGACTCAGT-CTCA  794
       |||||||||||||||| |||| |||| |||| | |||||||||| ||||
seq2  GGCATAGGTGGAATGACTTCTTGGGGTTCAGTGGGGAGACTCAGTCCTCA  799

seq1  AAAAAC-TAAGGTGGAGAG-TAATATAGGAAAACATCTGGCATTGACCTT  842
      |||||| |||||||||||| ||||||||||||||||||||||||||| ||
seq2  AAAAACTTAAGGTGGAGAGTTAATATAGGAAAACATCTGGCATTGACTTT  849

seq1  TGGCCTCCTCATGAATATGTATATAGGTATGTATACATAATATATA-TGC  891
      ||| |||||||||||| |||||||||||||||||||||||||  || |||
seq2  TGG-CTCCTCATGAATTTGTATATAGGTATGTATACATAATAATTATTGC  898

seq1  ATAGTATATATAGTATATATATATACATAATGTGTATACATATC  935
      ||||||||  |||||||| |||| ||| |||| | |||||||||
seq2  ATAGTATAATTAGTATAT-TATAAACA-AATGGGGATACATATC  940