BAC Information

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BAC

Clone NameB6Ng01-035L01
Chromosome1 (Build37)
Map Location 71,163,363 - 71,305,149
singlet/doubletdoublet
Overlap geneLOC667900, Abca12
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
Downstream geneLOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035L01.bB6Ng01-035L01.g
ACCDH864091DH864092
length967402
definitionDH864091|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L01, 5' end.DH864092|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,304,156 - 71,305,149)(71,163,363 - 71,163,770)
sequence
gaattctgctttagttcttgtcagcttttaagctttgtaggagaatccct
tggtaatagcataaggtacgatctgtaattgtaagcatatacaaacattt
tagggggagtctcatttgaaaacgtacccacaaaaaatggctttcctctc
tttaaataaagtgttcatttttctaagtggtcttttaaaggtgaaaataa
aatctatgtggaatttaaatattttcatctcttctaggcctatgctctcc
atgaggaacatttccattcactggcatgttttgttccatttggtgcttta
agggtttgaacgagggtcggatgcctaattcctcttcctcttatccacag
actgttcataaactccttaggagacttcacttgatggcctacaaggacag
atctacctccatgtgcagttacggcacaaaaaggaagctgtccactgccc
tggccttgatagggaaaccgtccatcctcctgctggtaagagaggcatta
tcaacaaagctgctagtgtgtaattagagcagcacatcagccatgtatat
tgttctcatcagcagcaccgtcaacatctagtgaggtcccactgtgtgcc
agttactgtcagagcacgtatactgccaccacattcggagaatttgtatt
agcaaataatttatgatcatgacagtgtcctcgggaagcactttgtgtct
gaagcaatggctcgggaggcttcagagaaaacactcagcatgtgaattcg
aaatagcagcaaccagctcaggggtttcaaataagtcagagagcagctca
aatttattcccacttatgatgaaatcatatttctgtagtactgatcagtg
actagcagtttcattttgctgagagaagcacatttagaacaagtgtgtac
taatatatttcttgtagctaaaatatgagtatgcagctgtgctgtgatga
aatacactgtgtcgttt
ataccctgactgtatgctgtattgattgccctggttaagccatttaaggt
ttaatctttccagccagtctcatgcctcaagtgatctttgcagtgtttat
catatgccattcagtatgtgtgatggttcatctctattgccaatgtgatg
aaatctatggtcacttgggggagactgtcttcattagattaattgaagta
attcctgcccattgtgagtggcaccattccctatatagtgggttggagga
ggcaggggagagacaagatgagagagggaagaggagagagggaagaagcc
atcatgggatagaagaagaatgtgcagaagaggagaaaggatagccacca
ttggttagctgaaccatgaaaacatggccatgtaggctggctagatgaaa
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71304156_71305149
seq2: B6Ng01-035L01.b_40_1006 (reverse)

seq1  AAACGACACAGTGTATTTTTCATCACAGCACAAGCTGCATAACTCATATT  50
      |||||||||||||||  |||||||||||||| |||||||| |||||||||
seq2  AAACGACACAGTGTA--TTTCATCACAGCAC-AGCTGCAT-ACTCATATT  46

seq1  TTTAAGCTACAAAGAAATATAATTTTAGTACAACACTTTGTTCTAAAATG  100
      ||  |||||| ||||||||||   ||||||| |||| ||||||| |||||
seq2  TT--AGCTAC-AAGAAATATA---TTAGTAC-ACAC-TTGTTCT-AAATG  87

seq1  TGCCTTTCTTCCTCAGCAAAAATTGGAAACTGCTAGTTCACTTGATCAGT  150
      |||  ||||  ||||||||||    ||||||||||| |||| ||||||||
seq2  TGC--TTCT--CTCAGCAAAA---TGAAACTGCTAG-TCAC-TGATCAGT  128

seq1  ACCTAACAGAAATATGATTTCATCAATAAGTGGGAATTAAATTTGAGCCT  200
      ||   ||||||||||||||||||| ||||||||||| |||||||||| ||
seq2  AC--TACAGAAATATGATTTCATC-ATAAGTGGGAA-TAAATTTGAG-CT  173

seq1  GCTCTCTGACTTATTTGAAACCCCTGAGCTGGTTGCTGCTATTTCGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGACTTATTTGAAACCCCTGAGCTGGTTGCTGCTATTTCGAATT  223

seq1  CACATGCTGAGTGTTTTCTCTGAAGCCTCCCGAGCCATTGCTTCAGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTGAGTGTTTTCTCTGAAGCCTCCCGAGCCATTGCTTCAGACAC  273

seq1  AAAGTGCTTCCCGAGGACACTGTCATGATCATAAATTATTTGCTAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCTTCCCGAGGACACTGTCATGATCATAAATTATTTGCTAATACA  323

seq1  AATTCTCCGAATGTGGTGGCAGTATACGTGCTCTGACAGTAACTGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCGAATGTGGTGGCAGTATACGTGCTCTGACAGTAACTGGCACA  373

seq1  CAGTGGGACCTCACTAGATGTTGACGGTGCTGCTGATGAGAACAATATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGACCTCACTAGATGTTGACGGTGCTGCTGATGAGAACAATATAC  423

seq1  ATGGCTGATGTGCTGCTCTAATTACACACTAGCAGCTTTGTTGATAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGATGTGCTGCTCTAATTACACACTAGCAGCTTTGTTGATAATGC  473

seq1  CTCTCTTACCAGCAGGAGGATGGACGGTTTCCCTATCAAGGCCAGGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTACCAGCAGGAGGATGGACGGTTTCCCTATCAAGGCCAGGGCAG  523

seq1  TGGACAGCTTCCTTTTTGTGCCGTAACTGCACATGGAGGTAGATCTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGCTTCCTTTTTGTGCCGTAACTGCACATGGAGGTAGATCTGTCC  573

seq1  TTGTAGGCCATCAAGTGAAGTCTCCTAAGGAGTTTATGAACAGTCTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGCCATCAAGTGAAGTCTCCTAAGGAGTTTATGAACAGTCTGTGG  623

seq1  ATAAGAGGAAGAGGAATTAGGCATCCGACCCTCGTTCAAACCCTTAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGGAAGAGGAATTAGGCATCCGACCCTCGTTCAAACCCTTAAAGC  673

seq1  ACCAAATGGAACAAAACATGCCAGTGAATGGAAATGTTCCTCATGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGGAACAAAACATGCCAGTGAATGGAAATGTTCCTCATGGAGAG  723

seq1  CATAGGCCTAGAAGAGATGAAAATATTTAAATTCCACATAGATTTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCCTAGAAGAGATGAAAATATTTAAATTCCACATAGATTTTATTT  773

seq1  TCACCTTTAAAAGACCACTTAGAAAAATGAACACTTTATTTAAAGAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTAAAAGACCACTTAGAAAAATGAACACTTTATTTAAAGAGAGG  823

seq1  AAAGCCATTTTTTGTGGGTACGTTTTCAAATGAGACTCCCCCTAAAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTTTTTGTGGGTACGTTTTCAAATGAGACTCCCCCTAAAATGT  873

seq1  TTGTATATGCTTACAATTACAGATCGTACCTTATGCTATTACCAAGGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATGCTTACAATTACAGATCGTACCTTATGCTATTACCAAGGGAT  923

seq1  TCTCCTACAAAGCTTAAAAGCTGACAAGAACTAAAGCAGAATTC  994
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTACAAAGCTTAAAAGCTGACAAGAACTAAAGCAGAATTC  967

seq1: chr1_71163363_71163770
seq2: B6Ng01-035L01.g_66_473

seq1  GAATTCATACCCTGACTGTATGCTGTATTGATTGCCCTGGTTAAGCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCCTGACTGTATGCTGTATTGATTGCCCTGGTTAAGCCATT  50

seq1  TAAGGTTTAATCTTTCCAGCCAGTCTCATGCCTCAAGTGATCTTTGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTAATCTTTCCAGCCAGTCTCATGCCTCAAGTGATCTTTGCAGT  100

seq1  GTTTATCATATGCCATTCAGTATGTGTGATGGTTCATCTCTATTGCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCATATGCCATTCAGTATGTGTGATGGTTCATCTCTATTGCCAAT  150

seq1  GTGATGAAATCTATGGTCACTTGGGGGAGACTGTCTTCATTAGATTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAATCTATGGTCACTTGGGGGAGACTGTCTTCATTAGATTAATT  200

seq1  GAAGTAATTCCTGCCCATTGTGAGTGGCACCATTCCCTATATAGTGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATTCCTGCCCATTGTGAGTGGCACCATTCCCTATATAGTGGGTT  250

seq1  GGAGGAGGCAGGGGAGAGACAAGATGAGAGAGGGAAGAGGAGAGAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGCAGGGGAGAGACAAGATGAGAGAGGGAAGAGGAGAGAGGGAA  300

seq1  GAAGCCATCATGGGATAGAAGAAGAATGTGCAGAAGAGGAGAAAGGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAGCCATCATGGGATAGAAGAAGAATGTGCAGAAGAGGAGAAAGGATAG  350

seq1  CCACCATGGGTTAGCTGAACCATGAAAACATGGCCATGTAGGCTGGCCAG  400
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  CCACCATTGGTTAGCTGAACCATGAAAACATGGCCATGTAGGCTGGCTAG  400

seq1  ATGAAACA  408
      ||||||||
seq2  ATGAAACA  408