BAC Information

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BAC

Clone NameB6Ng01-035M09
Chromosome1 (Build37)6 (Build37)
Map Location 75,459,395 - 75,459,990134,872,697 - 134,872,812
singlet/doubletsingletsinglet
Overlap geneAccn4
Upstream geneVil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa
Downstream geneD1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035M09.bB6Ng01-035M09.g
ACCDH864151DH864152
length598122
definitionDH864151|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M09, 5' end.DH864152|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,459,395 - 75,459,990)(134,872,697 - 134,872,812)
sequence
gaattctttactaattttgtcccctccctgggagtcagtagacactaagt
ctagctgcctgtaacctgcattagtgatgtttttgatgtttctgggcctc
agtttttttttttttcttctgtcaaatggaatcttctagaaaatttccac
ctgacttgcttctgggggtagttgtaagtcttgaagggaaaaaaaaagag
tagcaagccccaaagcaagcacctgtagtcccagatacttaggagtccaa
ggcaggaggattgcttcagccctggaatttagagcaacatagtgagctcc
ccttaagtcagcaaacatttgtaaagtgagatcatatccatgactcccca
gcatcagtctgagatgctggaataaaagccacagaacataggagaaggga
cagagtttggagcctgacaaagcagtgttcaaatcctgcctcttccacca
atcttaaaaaaacagcctgagacactacatcaagagctgggtgcctgaca
gtctctttaggccttggtttgttcctccacaaaaggcaacagcaattcct
ccccctcaagttaggactgcagatcagagataaactcccagagtgatg
tctctgtagaccaggctggccttgaactcacagagatctgcctgcttttg
ccacccaagtgctggaattccaggatgagttacctcatccagccaaaact
cagcttttttatttttttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75459395_75459990
seq2: B6Ng01-035M09.b_43_640 (reverse)

seq1  CATCACTCT-GGAGTTTATCTCTGATCTGCAGTCCTAACCTGAGGGGGAG  49
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  CATCACTCTGGGAGTTTATCTCTGATCTGCAGTCCTAACTTGAGGGGGAG  50

seq1  GAATTGCTGTTGCCTTTTGTGGAGGAACAAACCAAGGCCTAAAGAGACTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTGTTGCCTTTTGTGGAGGAACAAACCAAGGCCTAAAGAGACTG  100

seq1  TCAGGCACCCAGCTCTTGATGTAGTGTCTCAGGCTG-TTTATTAAGATTG  148
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  TCAGGCACCCAGCTCTTGATGTAGTGTCTCAGGCTGTTTTTTTAAGATTG  150

seq1  GTGGAAGAGGCAGGATTTGAACACTGCTTTGTCAGGCTCCAAACTCTGTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAGGCAGGATTTGAACACTGCTTTGTCAGGCTCCAAACTCTGTC  200

seq1  CCTTCTCCTATGTTCTGTGGCTTTTATTCCAGCATCTCAGACTGATGCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCTATGTTCTGTGGCTTTTATTCCAGCATCTCAGACTGATGCTG  250

seq1  GGGAGTCATGGATATGATCTCACTTTACAAATGTTTGCTGACTTAAGGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCATGGATATGATCTCACTTTACAAATGTTTGCTGACTTAAGGGG  300

seq1  AGCTCACTATGTTGCTCTAAATTCCAGGGCTGAAGCAATCCTCCTGCCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACTATGTTGCTCTAAATTCCAGGGCTGAAGCAATCCTCCTGCCTT  350

seq1  GGACTCCTAAGTATCTGGGACTACAGGTGCTTGCTTTGGGGCTTGCTACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTAAGTATCTGGGACTACAGGTGCTTGCTTTGGGGCTTGCTACT  400

seq1  CTTTTTTTTTCCCTTCAAGACTTACAACTACCCCCAGAAGCAAGTCAGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTCCCTTCAAGACTTACAACTACCCCCAGAAGCAAGTCAGGT  450

seq1  GGAAATTTTCTAGAAGATTCCATTTGACAGAAGAAAAAAAAAAAAACTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTTCTAGAAGATTCCATTTGACAGAAGAAAAAAAAAAAAACTGA  500

seq1  GGCCCAGAAACATCAAAAACATCACTAATGCAGGTTACAGGCAGCTAGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGAAACATCAAAAACATCACTAATGCAGGTTACAGGCAGCTAGAC  550

seq1  TTAGTGTCTACTGACTCCCAGGGAGGGGACAAAATTAGTAAAGAATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTCTACTGACTCCCAGGGAGGGGACAAAATTAGTAAAGAATTC  598

seq1: chr6_134872697_134872812
seq2: B6Ng01-035M09.g_77_197

seq1  CTCTGTAGACCACGCTGGCTTCGAACTCACAGAGATCTGTATTGTCTCTG  50
      |||||||||||| |||||| | |||||||||||||||||   ||  | ||
seq2  CTCTGTAGACCAGGCTGGCCTTGAACTCACAGAGATCTG-CCTGCTTTTG  49

seq1  CCTCCTGAGTGCTGAGATTAGAGGTTGTGTGCCATCACCTCTGGGTA---  97
      || ||  |||||||  |||  ||| || ||  | ||| | | |   |   
seq2  CCACCCAAGTGCTGGAATTCCAGGATGAGTTACCTCATC-CAGCCAAAAC  98

seq1  ----CTTTTTTATTTTTTTTTAA  116
          |||||||||||||||||||
seq2  TCAGCTTTTTTATTTTTTTTTAA  121