BAC Information

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BAC

Clone NameB6Ng01-035M22
Chromosome1 (Build37)
Map Location 179,199,746 - 179,303,640
singlet/doubletdoublet
Overlap genenone
Upstream genePld5, Cep170, Sdccag8, LOC666235, Akt3
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035M22.bB6Ng01-035M22.g
ACCDH864175DH864176
length1,051679
definitionDH864175|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M22, 5' end.DH864176|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,302,534 - 179,303,640)(179,199,746 - 179,200,424)
sequence
gaattccagtcagatgataaaaagatctcagctctcttaagggagtgtac
tctttcacaggggcacactaaaaagactgtcagagaggggtggtaatgta
gcctggttttccagcccctcccccagactactcctaatcacaggccaata
gttgctctccccacggtgttttgttttgattaaagactcctctcagagtt
tgtttttgttctatttttaatcacactcttgtatttaaacaattgcttga
aaggcatttcctttgatctccttctgattttttgttgctgttgcccaaat
ttaactatctctcactttgttttgtttttctttttgtttttgtttttaag
tactcaaaacaagtgggaagatctttttgatagtaatctcaagccataga
actctgaggaggaagatgtctgctcccttccctccgcagccacggtgact
tcaagttcttcctctgaaattcacctaagcagttgtctcaaaacaccatg
ttctttctctgtatctaatatggaagtctggcaaatgaaaagacaccctt
tcccaagttcaataagcgtagatggctgtggttaggttaagaaaacatca
cacacacacaaaagtgtatctctattacagccatttaaatatatataatt
ggagtgatttctaagtgcctttttttaaatacaggagcaagagagagaac
aaggcatagaataactcatgttaaaccttgtggagcttagccaagaaaaa
aaaaaaaaatcttcccagcatagactgtcagaacatctgaagagaaatgc
gcgacggaggccaggagaagcctttcatattttagaggagagatcacatt
agagatcttatgacgttttacaaagccttgctctctcacttttttctgtc
tcgtaggagggggaaaaatcacttaagttcggtgatgaggaaaggaaaga
aaagtgtgctagagatgctcaggaggtaagattactgagtcactgctggt
tctcatacagtaactgaaatagatcacggagcttcacacaagacttctgc
a
attgggagatacaaccattgtgaactgggcagaggtaagaaggcagagga
ccaacaactgatcttgtgctaggttgatttcattatgaagacaaaatgaa
gagttttcatatccacttcaaaagtatatattgatgtgtaaatattttct
ctcatttgcatatgtgctcacatgaatgatatacagaatattacactatg
cagaataaaatatatttatgttagcaggtgttaaaggcacaaaattaata
tcttctctacatttgtatttttgtttgacaaatattgtgccaaaattttt
ctatttttgtacattgttatttacattaatgttattaaatattttagaga
atcttgccctggattgattcctcagaattttttcttaaaaggtttaaaat
catctgagaattcaggaggcagaaacaagtggaattttgtgagttagaga
ctagcctgatctacatagtgagtggtctacatagaaattttaacattgaa
accagtggaatttcagctctatacattccaagatatagatgccataaaac
aaagagtgaaaatgtaaaggaacattttctagaagaaaagatcacttaga
caaggatgacactgaaccataaaaacccttagattcaggcatgctctgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_179302534_179303640
seq2: B6Ng01-035M22.b_42_1092 (reverse)

seq1  TGCAGGAAGTCTCTGTGTTAGAAGCTTCCCGTGATCTATTTTCAGTTTAC  50
      |||| ||||||| |||||  ||||||  |||||||||| |||||| ||||
seq2  TGCA-GAAGTCT-TGTGT--GAAGCT--CCGTGATCTA-TTTCAG-TTAC  42

seq1  TTGATGGAGGACACACGCAGTTGACTTCAGTAATTCTTACCTCCCTTGGG  100
      |  || ||| || || |||| |||| ||||||| ||||||||||  || |
seq2  TGTAT-GAGAAC-CA-GCAG-TGAC-TCAGTAA-TCTTACCTCC--TGAG  84

seq1  CATCTCTAACCACACCTTTTTTCTTTTCCCTTTCCCTCACTCACCGGAAC  150
      ||||||| | |||||   ||||||||  ||||| ||||| ||||| ||||
seq2  CATCTCT-AGCACAC---TTTTCTTT--CCTTT-CCTCA-TCACC-GAAC  125

seq1  TTTATGTGGATTTTTTCCCCCCTTCCTACCGAGAACAGAAAAAAAGTTGG  200
       ||| || |||||||   |||| ||||| |||| |||| ||||||||  |
seq2  -TTAAGT-GATTTTT---CCCCCTCCTA-CGAG-ACAG-AAAAAAGT--G  165

seq1  AGAGAGGCAAAGGCTTTTGTAAAACGTTCATAAGATCCTCTAATGTGAAT  250
      ||||||   ||||| ||||||||||| ||||||||| |||||||||| ||
seq2  AGAGAG--CAAGGC-TTTGTAAAACG-TCATAAGAT-CTCTAATGTG-AT  209

seq1  CTCTCCTCTAAAATATGAAAAGGCTTCTCCTGGCCTCCGTCTGTGCATTT  300
      ||||||||||||||||| ||||||||||||||||||||||| | ||||||
seq2  CTCTCCTCTAAAATATG-AAAGGCTTCTCCTGGCCTCCGTC-GCGCATTT  257

seq1  CTCCTTCATGATGTTCTGACAGTCTATGCTGGGAAGGATTTTTTTTTTTT  350
      || ||||| |||||||||||||||||||||||||||           |||
seq2  CT-CTTCA-GATGTTCTGACAGTCTATGCTGGGAAG----------ATTT  295

seq1  TTTTTTTTTTTTTTGGCTAAGCTCCACAAGGTTTAACATGAGTTATTCTA  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCTTGGCTAAGCTCCACAAGGTTTAACATGAGTTATTCTA  345

seq1  TTGCCTTGTTCTCTCTCTTGCTCCTGTATTTAAAAAAAGGCACTTAGAAA  450
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGCCTTGTTCTCTCTCTTGCTCCTGTATTTAAAAAAAGGCACTTAGAAA  394

seq1  TCACTCCAATTATATATATTTAAATGGCTGTAATAGAGATACACTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCAATTATATATATTTAAATGGCTGTAATAGAGATACACTTTTGT  444

seq1  GTGTGTGTGATGTTTTCTTAACCTAACCACAGCCATCTACGCTTATTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGATGTTTTCTTAACCTAACCACAGCCATCTACGCTTATTGAA  494

seq1  CTTGGGAAAGGGTGTCTTTTCATTTGCCAGACTTCCATATTAGATACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAAGGGTGTCTTTTCATTTGCCAGACTTCCATATTAGATACAGA  544

seq1  GAAAGAACATGGTGTTTTGAGACAACTGCTTAGGTGAATTTCAGAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACATGGTGTTTTGAGACAACTGCTTAGGTGAATTTCAGAGGAAG  594

seq1  AACTTGAAGTCACCGTGGCTGCGGAGGGAAGGGAGCAGACATCTTCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAGTCACCGTGGCTGCGGAGGGAAGGGAGCAGACATCTTCCTCC  644

seq1  TCAGAGTTCTATGGCTTGAGATTACTATCAAAAAGATCTTCCCACTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTCTATGGCTTGAGATTACTATCAAAAAGATCTTCCCACTTGTT  694

seq1  TTGAGTACTTAAAAACAAAAACAAAAAGAAAAACAAAACAAAGTGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTACTTAAAAACAAAAACAAAAAGAAAAACAAAACAAAGTGAGAGA  744

seq1  TAGTTAAATTTGGGCAACAGCAACAAAAAATCAGAAGGAGATCAAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAATTTGGGCAACAGCAACAAAAAATCAGAAGGAGATCAAAGGAA  794

seq1  ATGCCTTTCAAGCAATTGTTTAAATACAAGAGTGTGATTAAAAATAGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTCAAGCAATTGTTTAAATACAAGAGTGTGATTAAAAATAGAAC  844

seq1  AAAAACAAACTCTGAGAGGAGTCTTTAATCAAAACAAAACACCGTGGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACTCTGAGAGGAGTCTTTAATCAAAACAAAACACCGTGGGGA  894

seq1  GAGCAACTATTGGCCTGTGATTAGGAGTAGTCTGGGGGAGGGGCTGGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACTATTGGCCTGTGATTAGGAGTAGTCTGGGGGAGGGGCTGGAAA  944

seq1  ACCAGGCTACATTACCACCCCTCTCTGACAGTCTTTTTAGTGTGCCCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTACATTACCACCCCTCTCTGACAGTCTTTTTAGTGTGCCCCTG  994

seq1  TGAAAGAGTACACTCCCTTAAGAGAGCTGAGATCTTTTTATCATCTGACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGTACACTCCCTTAAGAGAGCTGAGATCTTTTTATCATCTGACT  1044

seq1  GGAATTC  1107
      |||||||
seq2  GGAATTC  1051

seq1: chr1_179199746_179200424
seq2: B6Ng01-035M22.g_79_757

seq1  ATTGGGAGATACAACCATTGTGAACTGGGCAGAGGTAAGAAGGCAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAGATACAACCATTGTGAACTGGGCAGAGGTAAGAAGGCAGAGGA  50

seq1  CCAACAACTGATCTTGTGCTAGGTTGATTTCATTATGAAGACAAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACTGATCTTGTGCTAGGTTGATTTCATTATGAAGACAAAATGAA  100

seq1  GAGTTTTCATATCCACTTCAAAAGTATATATTGATGTGTAAATATTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCATATCCACTTCAAAAGTATATATTGATGTGTAAATATTTTCT  150

seq1  CTCATTTGCATATGTGCTCACATGAATGATATACAGAATATTACACTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGCATATGTGCTCACATGAATGATATACAGAATATTACACTATG  200

seq1  CAGAATAAAATATATTTATGTTAGCAGGTGTTAAAGGCACAAAATTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAAATATATTTATGTTAGCAGGTGTTAAAGGCACAAAATTAATA  250

seq1  TCTTCTCTACATTTGTATTTTTGTTTGACAAATATTGTGCCAAAATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTACATTTGTATTTTTGTTTGACAAATATTGTGCCAAAATTTTT  300

seq1  CTATTTTTGTACATTGTTATTTACATTAATGTTATTAAATATTTTAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTGTACATTGTTATTTACATTAATGTTATTAAATATTTTAGAGA  350

seq1  ATCTTGCCCTGGATTGATTCCTCAGAATTTTTTCTTAAAAGGTTTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCCTGGATTGATTCCTCAGAATTTTTTCTTAAAAGGTTTAAAAT  400

seq1  CATCTGAGAATTCAGGAGGCAGAAACAAGTGGAATTTTGTGAGTTAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGAATTCAGGAGGCAGAAACAAGTGGAATTTTGTGAGTTAGAGA  450

seq1  CTAGCCTGATCTACATAGTGAGTGGTCTACATAGAAATTTTAACATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGATCTACATAGTGAGTGGTCTACATAGAAATTTTAACATTGAA  500

seq1  ACCAGTGGAATTTCAGCTCTATACATTCCAAGATATAGATGCCATAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGAATTTCAGCTCTATACATTCCAAGATATAGATGCCATAAAAC  550

seq1  AAAGAGTGAAAATGTAAAGGAACATTTTCTAGAAGAAAAGATCACTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGAAAATGTAAAGGAACATTTTCTAGAAGAAAAGATCACTTAGA  600

seq1  CAAGGATGACACTGAACCATAAAAACCCTTAGATTCAGGCATGCTCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGACACTGAACCATAAAAACCCTTAGATTCAGGCATGCTCTGTG  650

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGT  679
      |||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGT  679