BAC Information

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BAC

Clone NameB6Ng01-036C10
Chromosome1 (Build37)
Map Location 78,609,503 - 78,717,270
singlet/doubletdoublet
Overlap geneAcsl3, Utp14b
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1
Downstream geneLOC620521, Kcne4, LOC100039260, EG545332, Scg2, Ap1s3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036C10.bB6Ng01-036C10.g
ACCDH864419DH864420
length803807
definitionDH864419|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C10, 5' end.DH864420|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,716,467 - 78,717,270)(78,609,503 - 78,610,318)
sequence
gaattctccaactccaaacactggaaattccacgaggaagtaacctactt
gccctagcaaaccaaaacaaacaaaaacaagagataacagagagtaagac
cgccaggctctggctgttcaagaaggaaaggaagtcgagggctctaactt
taaaggagttaacaagcatgtctgcacacagagcccgtgctgtgctttct
caccatatccaagacctgtagatgtgcacgctccatgctgagaatatcaa
agaccataggagtgatccgaatgcctctccagatgtgagtcccttctgtg
aggactgatggtaacaagaggcattaagcaaggcagtgatgctcactgga
gatgtcatctccctcggtgacggtaatagcgtgccttccacacacagctc
gatgaaaacaaaactgggtccttcttcattgcacaccatagtagaattga
gcattttaaagaacctaatcccaaacaggaagctgagttgagtggctagg
tcaacaagtaatgtagaaggtgagattctaggggctgggaacatagctca
gttggtaaaattctcaacacatatactagaggccctgggtgggatcccca
gcaccacgtaaaccaggcgtaataacacattcctataacgtcagcactac
agacatagaggcaggagaatcagacgtttaagctatccttggctacgtag
caagttaaaggccagcccagtaaaatgagacatcttttatacatacatac
acacacatatacatatgtaatatagagcaatatcatatgtatgtgtattg
tat
gaattccatgatagccagggctacacagtgaaaccctgtcttgaaaaacc
taaacaaacaaatgaataaaacctcacagttctggaaggttaccatccac
agccattgtggcaggcagcatccatggagcagtacctaagagtccacagt
ggtctacaagcacaactgtgaatggccagggcatttgaaacctcaaagcc
acccccacagtgacacacctagtccaacaaggccacatctaatctttccc
aaacagatctactaactgccgaccaaggaaaacatatgagcctgtgggaa
cattcagatcattactcaggctctcttgctgaatccagtgaacctggagt
tctgtttctgttagtctagctagtttgttctaggaatcccagcacaagga
ttataggttgtggaaccatgaaaggtagccttgtttctggttgagctata
agactcagaaaccccggtgacagtgacggtaggcgctttccctttggttc
tggggcaccaggcccctgccactagctgcagctccacatatattttgtga
ccttcagtcacgtaagggcaatgccctaagccccctccacaatagaggat
gcgaccattggtcacagtaggctcaagacagatctccattttaaagaggt
acctaaaggctggtggctaactaataagctttcctggccagacactcttt
ctacaaaagtgtttaactcgggctcgccctgagaagtggggtacggtttt
actatcataacaataaatgtttaaacctggactgcctcctttcattgacc
gtgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78716467_78717270
seq2: B6Ng01-036C10.b_44_846 (reverse)

seq1  ATAC-ATACACATACATATGATATTGCTCTATATTACATATGTATATGTG  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATACACATACATATGATATTGCTCTATATTACATATGTATATGTG  50

seq1  TGTGTATGTATGTATAAAAGATGTCTCATTTTTACTGGGCTGGCCTTTAA  99
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTGTATGTATGTATAAAAGATGTCTCA-TTTTACTGGGCTGGCCTTTAA  99

seq1  CTTGCTACGTAGCCAAGGATAGCCTTAAACGTCTGATTCTCCTGCCTCTA  149
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTGCTACGTAGCCAAGGATAG-CTTAAACGTCTGATTCTCCTGCCTCTA  148

seq1  TGTCTGTAGTGCTGACGTTATAGGAATGTGTTATTACGCCTGGTTTACGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTAGTGCTGACGTTATAGGAATGTGTTATTACGCCTGGTTTACGT  198

seq1  GGTGCTGGGGATCCCACCCAGGGCCTCTAGTATATGTGTTGAGAATTTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGGGATCCCACCCAGGGCCTCTAGTATATGTGTTGAGAATTTTA  248

seq1  CCAACTGAGCTATGTTCCCAGCCCCTAGAATCTCACCTTCTACATTACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGAGCTATGTTCCCAGCCCCTAGAATCTCACCTTCTACATTACTT  298

seq1  GTTGACCTAGCCACTCAACTCAGCTTCCTGTTTGGGATTAGGTTCTTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCTAGCCACTCAACTCAGCTTCCTGTTTGGGATTAGGTTCTTTAA  348

seq1  AATGCTCAATTCTACTATGGTGTGCAATGAAGAAGGACCCAGTTTTGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCAATTCTACTATGGTGTGCAATGAAGAAGGACCCAGTTTTGTTT  398

seq1  TCATCGAGCTGTGTGTGGAAGGCACGCTATTACCGTCACCGAGGGAGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGAGCTGTGTGTGGAAGGCACGCTATTACCGTCACCGAGGGAGATG  448

seq1  ACATCTCCAGTGAGCATCACTGCCTTGCTTAATGCCTCTTGTTACCATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCCAGTGAGCATCACTGCCTTGCTTAATGCCTCTTGTTACCATCA  498

seq1  GTCCTCACAGAAGGGACTCACATCTGGAGAGGCATTCGGATCACTCCTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACAGAAGGGACTCACATCTGGAGAGGCATTCGGATCACTCCTAT  548

seq1  GGTCTTTGATATTCTCAGCATGGAGCGTGCACATCTACAGGTCTTGGATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGATATTCTCAGCATGGAGCGTGCACATCTACAGGTCTTGGATA  598

seq1  TGGTGAGAAAGCACAGCACGGGCTCTGTGTGCAGACATGCTTGTTAACTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAAAGCACAGCACGGGCTCTGTGTGCAGACATGCTTGTTAACTC  648

seq1  CTTTAAAGTTAGAGCCCTCGACTTCCTTTCCTTCTTGAACAGCCAGAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTTAGAGCCCTCGACTTCCTTTCCTTCTTGAACAGCCAGAGCC  698

seq1  TGGCGGTCTTACTCTCTGTTATCTCTTGTTTTTGTTTGTTTTGGTTTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTCTTACTCTCTGTTATCTCTTGTTTTTGTTTGTTTTGGTTTGCT  748

seq1  AGGGCAAGTAGGTTACTTCCTCGTGGAATTTCCAGTGTTTGGAGTTGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAGTAGGTTACTTCCTCGTGGAATTTCCAGTGTTTGGAGTTGGAG  798

seq1  AATTC  804
      |||||
seq2  AATTC  803

seq1: chr1_78609503_78610318
seq2: B6Ng01-036C10.g_68_874

seq1  GAATTCCATGATAGCCAGGGCTACACAGTGAAACCCTGTCTTGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATAGCCAGGGCTACACAGTGAAACCCTGTCTTGAAAAACC  50

seq1  TAAACAAACAAATGAATAAAACCTCACAGTTCTGGAAGGTTACCATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAACAAATGAATAAAACCTCACAGTTCTGGAAGGTTACCATCCAC  100

seq1  AGCCATTGTGGCAGGCAGCATCCATGGAGCAGTACCTAAGAGTCCACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGTGGCAGGCAGCATCCATGGAGCAGTACCTAAGAGTCCACAGT  150

seq1  GGTCTACAAGCACAACTGTGAATGGCCAGGGCATTTGAAACCTCAAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAAGCACAACTGTGAATGGCCAGGGCATTTGAAACCTCAAAGCC  200

seq1  ACCCCCACAGTGACACACCTAGTCCAACAAGGCCACATCTAATCTTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACAGTGACACACCTAGTCCAACAAGGCCACATCTAATCTTTCCC  250

seq1  AAACAGATCTACTAACTGCCGACCAAGGAAAACATATGAGCCTGTGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATCTACTAACTGCCGACCAAGGAAAACATATGAGCCTGTGGGAA  300

seq1  CATTCAGATCATTACTCAGGCTCTCTTGCTGAATCCAGTGAACCTGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGATCATTACTCAGGCTCTCTTGCTGAATCCAGTGAACCTGGAGT  350

seq1  TCTGTTTCTGTTAGTCTAGCTAGTTTGTTCTAGGAATCCCAGCACAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTGTTAGTCTAGCTAGTTTGTTCTAGGAATCCCAGCACAAGGA  400

seq1  TTATAGGTTGTGGAACCATGAAAGGTAGCCTTGTTTCTGGTTGAGCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTTGTGGAACCATGAAAGGTAGCCTTGTTTCTGGTTGAGCTATA  450

seq1  AGACTCAGAAACCCCGGTGACAGTGACGGTAGGCGCTT--CCCTTGGTTC  498
      ||||||||||||||||||||||||||||||||||||||  || |||||||
seq2  AGACTCAGAAACCCCGGTGACAGTGACGGTAGGCGCTTTCCCTTTGGTTC  500

seq1  TGGGGCACCAGGCCCCTGCCACTAGCTGCAGCTCCACATATA-TTTGTGA  547
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGGGCACCAGGCCCCTGCCACTAGCTGCAGCTCCACATATATTTTGTGA  550

seq1  CCTTCAGTCACGTAAGGGCAATGCCCTAAG-CCCCTCCACAAGTAGAGGA  596
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  CCTTCAGTCACGTAAGGGCAATGCCCTAAGCCCCCTCCACAA-TAGAGGA  599

seq1  TGCGACCTATGGTCACAGTAGGCTCAAGACAGATCTCCATTTTAAAGAGG  646
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACCATTGGTCACAGTAGGCTCAAGACAGATCTCCATTTTAAAGAGG  649

seq1  TACCTAAAGGCCTGGTGGCTAAGCTAATAAGCTTTCCTGCCCAGACACTC  696
      |||||||||| ||||||||||| |||||||||||||||| ||||||||| 
seq2  TACCTAAAGG-CTGGTGGCTAA-CTAATAAGCTTTCCTGGCCAGACACT-  696

seq1  CTCTCTACAAAAGGTGTTTAACCTCGGGCTCGCCCTGAGAAGTGGGGTAC  746
      || ||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  CTTTCTACAAAA-GTGTTTAA-CTCGGGCTCGCCCTGAGAAGTGGGGTAC  744

seq1  GGTTTTACTTATCCATAACAATAAATGTCTTAAAACCATGGACTGCCTCC  796
      |||||||| ||| ||||||||||||||| |||||  | ||||||||||||
seq2  GGTTTTAC-TAT-CATAACAATAAATGT-TTAAA--CCTGGACTGCCTCC  789

seq1  TTTCATTGACCCGTTGTGGG  816
      |||||||||||   ||||||
seq2  TTTCATTGACC--GTGTGGG  807