BAC Information

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BAC

Clone NameB6Ng01-037M03
Chromosome1 (Build37)
Map Location 81,366,322 - 81,524,242
singlet/doubletdoublet
Overlap genenone
Upstream geneEG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
Downstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037M03.bB6Ng01-037M03.g
ACCDH865524DH865525
length1,1131,082
definitionDH865524|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M03, 5' end.DH865525|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,366,322 - 81,367,436)(81,523,152 - 81,524,242)
sequence
gaattccttatacaagagtcccttagcctcttaattcttccctggatatc
actgagagattaaatgttggaagtaaggaagtggggtgtatttctaaatg
taattctgaactgttcttttctttctaataaaagaggtgcaagcatcttg
gcgaaatcaatcttgctgtcacctgtgtgacaagtgtgggcacatccctg
tttaaacaagagtattaaaaactaaagaaaactaaatttaaaaaaaatgg
caacagagaaaatgtagcggggcttaattttattggcacattcacctata
cattccacaaaaatattgggtaacccaaagggcacagcagcctactggga
tccggcttggcttagctctcggctacgctctgcatcactcagttttgctt
gtggttcaggaatcagaatcccggggtggatgagtggaagaaaggagagt
aatatcccgattttctctttaacaaaaaaatctcattgttatgaatgaac
cttttctataatggagaaagcaaaaaaaaaaaaaattcacagatcttgta
tcttctatgtgttgagtctggaaaaaccactatagcatgacagagtatgg
ccaattccagatataaccagggaatgagatataaaagcctagtttgtgtg
tttggaagaacacaaaaatgtgtgtccaaagggatttttgaaagggtgta
caatgatgtgacccactgtccaggtctcttttttaggaattaaggagccg
tgatataacttccaagagcattgctatcattggctacctccactggaaga
ccacaccttccttgtataatagacatctgcttcctggttgagagtaaaaa
gatgtacatactagctagtacttacatctcagcgtatgtagggatgctct
ttgggatccatctgcacactttttttccctttgtttccatgggtacttgg
tcctagataatgcctgtgaagcctgtctgtatggttttttccaatttaaa
aattctttccaggaaggaaataaatgctcctgaaaacaactcctgtgtct
gagaaagctgaaaaagagtctctgaaggccctcctcctcatggtttatga
agaaaaaaaataa
gaattctgagaaggaattcagcatctcactgaaggggagttattccacct
gtgtatgactcagagtaagcctgccttcctaggtcagacccttagctggt
tattgacatgcccaacatgaatgttaggcctcccaaggccagattgcatt
cttccaatcagaaggaggatttccttgatgggcttttattgcttacctta
acgttattattctttaggatgatgtttatgcatggtgctgccaaaacaca
atggatgtggtaccttgaacattagatctactaatatttgaggaagtaga
atacctagttttattagatcattaaaaactagaaatatgaatagacttta
gaaaaaaactagagttatataaacaaaggaaggctattttgacccagttg
tagtgtttatctactaaatattaattcttaggatattggaaaattaaatt
ccagactaaggtaggttaagtctacaggtcctcattgaaaggaatgataa
agaatacattcataggaaacagagtggagaggatcatgtcaccagagcgg
gtaaagaaaaagaatgatctgcaaactggctatgtcgaagttagaacatc
tagacttgcagtaatgcctaaagaggagatttagaaacttgctcaaaata
aaaatattaaactgaaataaaaaatggattaatagatcagaaatttgaag
aataaattatcttttacaaaaattatttctcagttttaaatttcagacac
tctaactctaaactctatatgagggcacattaagataagttggctttacg
acaattgatattagaaaggggaagtaataatttgaaccaatattacaaat
taaagctgttacataaagtaaatgtatagattaaaaacccctgcttggtg
agaaaatggacagcataacaaatttaattttaaacatggatgcaagacaa
tgaaatttacaaatgaaaacttccacaattatatacaaatttaagtagtc
agtccagtaagttataccatgggctgaagaacatcaaggctagtagcatt
taactacctgatttttttttttaccatacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81366322_81367436
seq2: B6Ng01-037M03.b_47_1159

seq1  GAATTCCTTATACAAGAGTCCCTTAGCCTCTTAATTCTTCCCTGGATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATACAAGAGTCCCTTAGCCTCTTAATTCTTCCCTGGATATC  50

seq1  ACTGAGAGATTAAATGTTGGAAGTAAGGAAGTGGGGTGTATTTCTAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGATTAAATGTTGGAAGTAAGGAAGTGGGGTGTATTTCTAAATG  100

seq1  TAATTCTGAACTGTTCTTTTCTTTCTAATAAAAGAGGTGCAAGCATCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGAACTGTTCTTTTCTTTCTAATAAAAGAGGTGCAAGCATCTTG  150

seq1  GCGAAATCAATCTTGCTGTCACCTGTGTGACAAGTGTGGGCACATCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAATCAATCTTGCTGTCACCTGTGTGACAAGTGTGGGCACATCCCTG  200

seq1  TTTAAACAAGAGTATTAAAAACTAAAGAAAACTAAATTTAAAAAAAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAGAGTATTAAAAACTAAAGAAAACTAAATTTAAAAAAAATGG  250

seq1  CAACAGAGAAAATGTAGCGGGGCTTAATTTTATTGGCACATTCACCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGAAAATGTAGCGGGGCTTAATTTTATTGGCACATTCACCTATA  300

seq1  CATTCCACAAAAATATTGGGTAACCCAAAGGGCACAGCAGCCTACTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCACAAAAATATTGGGTAACCCAAAGGGCACAGCAGCCTACTGGGA  350

seq1  TCCGGCTTGGCTTAGCTCTCGGCTACGCTCTGCATCACTCAGTTTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCTTGGCTTAGCTCTCGGCTACGCTCTGCATCACTCAGTTTTGCTT  400

seq1  GTGGTTCAGGAATCAGAATCCCGGGGTGGATGAGTGGAAGAAAGGAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCAGGAATCAGAATCCCGGGGTGGATGAGTGGAAGAAAGGAGAGT  450

seq1  AATATCCCGATTTTCTCTTTAACAAAAAAATCTCATTGTTATGAATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCGATTTTCTCTTTAACAAAAAAATCTCATTGTTATGAATGAAC  500

seq1  CTTTTCTATAATGGAGAAAGCAAAAAAAAAAAAAATTCACAGATCTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTATAATGGAGAAAGCAAAAAAAAAAAAAATTCACAGATCTTGTA  550

seq1  TCTTCTATGTGTTGAGTCTGGAAAAACCACTATAGCATGACAGAGTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATGTGTTGAGTCTGGAAAAACCACTATAGCATGACAGAGTATGG  600

seq1  CCAATTCCAGATATAACCAGGGAATGAGATATAAAAGCCTAGTTTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCAGATATAACCAGGGAATGAGATATAAAAGCCTAGTTTGTGTG  650

seq1  TTTGGAAGAACACAAAAATGTGTGTCCAAAGGGATTTTTGAAAGGGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGAACACAAAAATGTGTGTCCAAAGGGATTTTTGAAAGGGTGTA  700

seq1  CAATGATGTGACCCACTGTCCAGGTCTC-TTTTTAGGAATTAAGGAGCCG  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAATGATGTGACCCACTGTCCAGGTCTCTTTTTTAGGAATTAAGGAGCCG  750

seq1  TGATATAACTTCCAAGAGCATTGCTATCATTGGCTACCTCCACTGGAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAACTTCCAAGAGCATTGCTATCATTGGCTACCTCCACTGGAAGA  800

seq1  CCACACCTTCCTTGTATAATAGACATCTGCTTCCTGGTTGAGAGTAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTTCCTTGTATAATAGACATCTGCTTCCTGGTTGAGAGTAAAAA  850

seq1  GATGTACATACTAGCTAGTACTTACATCTCAGCGTATGTAGGGATGCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACATACTAGCTAGTACTTACATCTCAGCGTATGTAGGGATGCTCT  900

seq1  TTGGGATCCATCTGCACACTTTTTTTCCCTTTGTTTCCATGGGTACTGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGGGATCCATCTGCACACTTTTTTTCCCTTTGTTTCCATGGGTACTTGG  950

seq1  TCCTAGATAATGCCTGTGAAGCCCTGTCTTGTAGTGTTTTTTTCCAATTA  999
      ||||||||||||||||||||| |||||| |||| || |||||||||||| 
seq2  TCCTAGATAATGCCTGTGAAG-CCTGTC-TGTA-TGGTTTTTTCCAATTT  997

seq1  AAGAATTCTTTCCAGGAAGGAGATAAAATGCTCCTGAGATCAACTCCTGT  1049
      || |||||||||||||||||| || |||||||||||| | ||||||||||
seq2  AAAAATTCTTTCCAGGAAGGAAAT-AAATGCTCCTGAAAACAACTCCTGT  1046

seq1  GTCTGAGAAAGCTGAAATAAGAGTCTCGAAAGGCCCT-CTCTCCATGGTT  1098
      ||||||||||||||||| |||||||||  |||||||| |||  |||||||
seq2  GTCTGAGAAAGCTGAAA-AAGAGTCTCTGAAGGCCCTCCTCCTCATGGTT  1095

seq1  ATAGAAG-AAAAGAATAA  1115
         |||| |||| |||||
seq2  TATGAAGAAAAAAAATAA  1113

seq1: chr1_81523152_81524242
seq2: B6Ng01-037M03.g_70_1151 (reverse)

seq1  TTTGT---GTAAAAAAAAAAATCATGTAGTTATATTGCTACTTAGCTGTT  47
      |||||   |||||||||||||||| ||||||| | |||||| ||||  ||
seq2  TTTGTATGGTAAAAAAAAAAATCAGGTAGTTA-AATGCTAC-TAGC-CTT  47

seq1  GATGTTTCTCAG-CCATGTTAATATCTCTACTGAGACTGACTACCTTAAA  96
      ||||||  |||| ||||| | ||| || ||||| ||||||||| ||||||
seq2  GATGTTCTTCAGCCCATGGT-ATAACT-TACTG-GACTGACTA-CTTAAA  93

seq1  TTTGTATAATAATTGTGGAAGTTTTCATTTTGTAAATTTTCATTGTCTTG  146
      ||||||| ||||||||||||||||||| |||||||| |||||||||||||
seq2  TTTGTAT-ATAATTGTGGAAGTTTTCA-TTTGTAAA-TTTCATTGTCTTG  140

seq1  CATCCATGTTTAAAATTAAAATTTTGTTATTGCTTGTCCATTTTCTCACC  196
      ||||||||||||||||||||  ||||||| ||| ||||||||||||||||
seq2  CATCCATGTTTAAAATTAAA--TTTGTTA-TGC-TGTCCATTTTCTCACC  186

seq1  AAGCAGGGGTTTTTAATCTATAACATTTACTTTATGTAACAGCTTTAATT  246
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGCAGGGGTTTTTAATCTAT-ACATTTACTTTATGTAACAGCTTTAATT  235

seq1  TGTAATATTTGGTTCAAA-TATTACTTTCCCCTTTCTAATTTCAATTGTC  295
      ||||||| |||||||||| |||||| |||||||||||||| |||||||||
seq2  TGTAATA-TTGGTTCAAATTATTAC-TTCCCCTTTCTAATATCAATTGTC  283

seq1  GT-AAGCCAACTTATCTTAATGTG-CCTCATATAGAGTTTAGAGTTAGAG  343
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAAAGCCAACTTATCTTAATGTGCCCTCATATAGAGTTTAGAGTTAGAG  333

seq1  TGTCTGAAATTTAAAACTGAGAAATAATTTTTGTAAAAGATAATTTATTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAATTTAAAACTGAGAAATAATTTTTGTAAAAGATAATTTATTC  383

seq1  TTC-AATTTCTGATCTATTAATCCATTTTTTATTTCAGTTTAATATTTTT  442
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTCTGATCTATTAATCCATTTTTTATTTCAGTTTAATATTTTT  433

seq1  ATTTTGAGCAAGTTTCTAAATCTCCTCTTTAGGCATTACTGCAAGTCTAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGCAAGTTTCTAAATCTCCTCTTTAGGCATTACTGCAAGTCTAG  483

seq1  ATGTTCTAACTTCGACATAGCCAGTTTGCAGATCATTCTTTTTCTTTACC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTAACTTCGACATAGCCAGTTTGCAGATCATTCTTTTTCTTTACC  533

seq1  CGCTCTGGTGACATGATCCTCTCCACTCTGTTTCCTATGAATGTATTCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGGTGACATGATCCTCTCCACTCTGTTTCCTATGAATGTATTCTT  583

seq1  TATCATTCCTTTCAATGAGGACCTGTAGACTTAACCTACCTTAGTCTGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCCTTTCAATGAGGACCTGTAGACTTAACCTACCTTAGTCTGGA  633

seq1  ATTTAATTTTCCAATATCCTAAGAATTAATATTTAGTAGATAAACACTAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTCCAATATCCTAAGAATTAATATTTAGTAGATAAACACTAC  683

seq1  AACTGGGTCAAAATAGCCTTCCTTTGTTTATATAACTCTAGTTTTTTTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGTCAAAATAGCCTTCCTTTGTTTATATAACTCTAGTTTTTTTCT  733

seq1  AAAGTCTATTCATATTTCTAGTTTTTAATGATCTAATAAAACTAGGTATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTATTCATATTTCTAGTTTTTAATGATCTAATAAAACTAGGTATT  783

seq1  CTACTTCCTCAAATATTAGTAGATCTAATGTTCAAGGTACCACATCCATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCTCAAATATTAGTAGATCTAATGTTCAAGGTACCACATCCATT  833

seq1  GTGTTTTGGCAGCACCATGCATAAACATCATCCTAAAGAATAATAACGTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGGCAGCACCATGCATAAACATCATCCTAAAGAATAATAACGTT  883

seq1  AAGGTAAGCAATAAAAGCCCATCAAGGAAATCCTCCTTCTGATTGGAAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAGCAATAAAAGCCCATCAAGGAAATCCTCCTTCTGATTGGAAGA  933

seq1  ATGCAATCTGGCCTTGGGAGGCCTAACATTCATGTTGGGCATGTCAATAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATCTGGCCTTGGGAGGCCTAACATTCATGTTGGGCATGTCAATAA  983

seq1  CCAGCTAAGGGTCTGACCTAGGAAGGCAGGCTTACTCTGAGTCATACACA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAAGGGTCTGACCTAGGAAGGCAGGCTTACTCTGAGTCATACACA  1033

seq1  GGTGGAATAACTCCCCTTCAGTGAGATGCTGAATTCCTTCTCAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATAACTCCCCTTCAGTGAGATGCTGAATTCCTTCTCAGAATTC  1082