BAC Information

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BAC

Clone NameB6Ng01-037P22
Chromosome1 (Build37)
Map Location 79,356,436 - 79,475,925
singlet/doubletdoublet
Overlap geneScg2
Upstream geneSgpp2, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneAp1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037P22.bB6Ng01-037P22.g
ACCDH865695DH865696
length640567
definitionDH865695|Mus musculus domesticus DNA, BAC clone: B6Ng01-037P22, 5' end.DH865696|Mus musculus domesticus DNA, BAC clone: B6Ng01-037P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,475,287 - 79,475,925)(79,356,436 - 79,357,008)
sequence
gaattcttgctggcgagatactagctcgggataagatccctctccccaaa
ctgttaaatacacaaaactaacatgaagagggaacaatattgatgaaaga
acatttgatagttttttttttgtttttttttttttttttttagatatacg
ctggttaaaaataagaataaactaaaagaaatagcttcctttgagtgtct
tccttttcaactccaatttggttcatttctcttgattcctcctttttcag
attaattctcatttattttaggtgtgtatcattagaacatctgggcctct
ttggtggcattttcactgacccttttctcagccatgggccaggagctaaa
aactcctggccctgcatggaaccttctgaactattttgtctgaccacttg
gaatgtgaatgccctaggatagaacacaacaacacacacacaaaaactga
aaactccccctaaaccaaacacagcacaacgggatcatggctctacaaac
tgtttcatatatgagaacccagaggaatttgagtttgaagttcctattgc
tcagcatgtgatgaactttccttggcacatattaaaatatagcattaata
gaagatttaaagggaagagctatgttactagggcgactgt
tttgttcagttctgagccccattttttaatggggttatttgattttctga
agtccaccttctggagttctttatatatgttggatattaatcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctttttgt
cttattgacggtgtcttttgccttggcacagacattcttacttatgtttt
agactttgtatttttggattcttttaaagatatatatatctttataaata
tatatataagtatatatatataaagtatatatatatatatactgttcttg
tcttcagacacaccagaagagggcatcagaacctattagagatgtttgtg
agccaccatgtggttgctgggaattgaactcaggacctctggaaaagcag
tcagtgctcttaacctctttgccatctctccagccccatgttctactttt
aaaaataaatctgttcttaatatttattttgttttatgagtatctgtgca
tgggtgcacttgaaccagtggatatgagaggaatgtatcaaatcccccag
aactggggattgaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_79475287_79475925
seq2: B6Ng01-037P22.b_41_680 (reverse)

seq1  ACAGTCGCCCTAGTAACATAGCTCTT-CCTTTAAATCTTCTATTAATGCT  49
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAGTCGCCCTAGTAACATAGCTCTTCCCTTTAAATCTTCTATTAATGCT  50

seq1  ATATTTTAATATGTGCCAAGGAAAGTTCATCACATGCTGAGCAATAGGAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAATATGTGCCAAGGAAAGTTCATCACATGCTGAGCAATAGGAA  100

seq1  CTTCAAACTCAAATTCCTCTGGGTTCTCATATATGAAACAGTTTGTAGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACTCAAATTCCTCTGGGTTCTCATATATGAAACAGTTTGTAGAG  150

seq1  CCATGATCCCGTTGTGCTGTGTTTGGTTTAGGGGGAGTTTTCAGTTTTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCCCGTTGTGCTGTGTTTGGTTTAGGGGGAGTTTTCAGTTTTTG  200

seq1  TGTGTGTGTTGTTGTGTTCTATCCTAGGGCATTCACATTCCAAGTGGTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTTGTTGTGTTCTATCCTAGGGCATTCACATTCCAAGTGGTCA  250

seq1  GACAAAATAGTTCAGAAGGTTCCATGCAGGGCCAGGAGTTTTTAGCTCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATAGTTCAGAAGGTTCCATGCAGGGCCAGGAGTTTTTAGCTCCT  300

seq1  GGCCCATGGCTGAGAAAAGGGTCAGTGAAAATGCCACCAAAGAGGCCCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATGGCTGAGAAAAGGGTCAGTGAAAATGCCACCAAAGAGGCCCAG  350

seq1  ATGTTCTAATGATACACACCTAAAATAAATGAGAATTAATCTGAAAAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTAATGATACACACCTAAAATAAATGAGAATTAATCTGAAAAAGG  400

seq1  AGGAATCAAGAGAAATGAACCAAATTGGAGTTGAAAAGGAAGACACTCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCAAGAGAAATGAACCAAATTGGAGTTGAAAAGGAAGACACTCAA  450

seq1  AGGAAGCTATTTCTTTTAGTTTATTCTTATTTTTAACCAGCGTATATCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTATTTCTTTTAGTTTATTCTTATTTTTAACCAGCGTATATCTA  500

seq1  AAAAAAAAAAAAAAAAAACAAAAAAAAAACTATCAAATGTTCTTTCATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAACAAAAAAAAAACTATCAAATGTTCTTTCATCA  550

seq1  ATATTGTTCCCTCTTCATGTTAGTTTTGTGTATTTAACAGTTTGGGGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTCCCTCTTCATGTTAGTTTTGTGTATTTAACAGTTTGGGGAGA  600

seq1  GGGATCTTATCCCGAGCTAGTATCTCGCCAGCAAGAATTC  639
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTATCCCGAGCTAGTATCTCGCCAGCAAGAATTC  640

seq1: chr1_79356436_79357008
seq2: B6Ng01-037P22.g_69_641

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTGGAGTTCTTTATATATGTTGGATATTAATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTGGAGTTCTTTATATATGTTGGATATTAATCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGGCACAGACATTCTTACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGGCACAGACATTCTTACTTA  200

seq1  TGTTTTAGACTTTGTATTTTTGGATTCTTTTAAAGATATATATATCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGACTTTGTATTTTTGGATTCTTTTAAAGATATATATATCTTTA  250

seq1  TAAATATATATATAAGTATATATATATAAAGTATATATATATATATACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATATATAAGTATATATATATAAAGTATATATATATATATACTG  300

seq1  TTCTTGTCTTCAGACACACCAGAAGAGGGCATCAGAACCTATTAGAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCTTCAGACACACCAGAAGAGGGCATCAGAACCTATTAGAGATG  350

seq1  TTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAA  400

seq1  AAGCAGTCAGTGCTCTTAACCTCTTTGCCATCTCTCCAGCCCCATGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCAGTGCTCTTAACCTCTTTGCCATCTCTCCAGCCCCATGTTCT  450

seq1  ACTTTTAAAAATAAATCTGTTCTTAATATTTATTTTGTTTTATGAGTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAAATAAATCTGTTCTTAATATTTATTTTGTTTTATGAGTATC  500

seq1  TGTGCATGGGTGCACTTGAACCAGTGGATATGAGAGGAATGTATCAGATC  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTGCATGGGTGCACTTGAACCAGTGGATATGAGAGGAATGTATCAAATC  550

seq1  CCCCAGAACTGGGGATAGAGGAG  573
      |||||||||||||||| ||||||
seq2  CCCCAGAACTGGGGATTGAGGAG  573