BAC Information

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BAC

Clone NameB6Ng01-038G18
Chromosome1 (Build37)
Map Location 172,935,075 - 173,047,391
singlet/doubletdoublet
Overlap geneFcgr4, Fcgr3
Upstream geneDdr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b
Downstream gene1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038G18.bB6Ng01-038G18.g
ACCDH865985DH865986
length1,187565
definitionDH865985|Mus musculus domesticus DNA, BAC clone: B6Ng01-038G18, 5' end.DH865986|Mus musculus domesticus DNA, BAC clone: B6Ng01-038G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,046,170 - 173,047,391)(172,935,075 - 172,935,632)
sequence
gaattcaatggaaaacgctgcctgcctgcctgcctgcctgcctgcctgcc
tgcctgtgttcttctcttccacttcctgactgaagattcaatgtgaccgg
ccaccacacactcccgataccataacttcctcagcacggtggactgtact
cttgaactgtgaaccaaaatacactcttcatttcataagttgcgtttgtc
cggtactttgtcacagtgatgagaaaagtgactaagacacaagcctggtg
gaatcttgtactattccagaacattgatagcaaggagcccatctagcttt
aaaaagtaaatataaaaccaaacaggtcctcatatggagttccaggacat
ccaggactaaagagagagagaccctcaacaacaacaacaaaacctaaata
aataaacaaacaaatgacatttaaagaactccaaaagtgggagacaagtg
ggagcccatcatgtgccggctatgtactgggctttgtagcaacaccctat
agggatagcttgtctctactccaaaatcaaaatcagtgacacttgagtta
ggaagacttggagactcaagattgatgatagcttgaggtgctggaatttt
ctggaactgttcattcacgtgactggaaattacaccggttgtaagatata
cttcactggtaaattgtcacatattgtttgagatctctagggactggttc
tggagctgagattgtccatttcctctatttcagaccccagcatgcttgtc
aaagtgacctccaagaccccttatctgtgaatgggctgccccaccctgat
tctgtgacaggggaaaacgggacattaactgcatcttatctgaggttgca
ggagcagtctcgtgtggcctctcagaagatatctttaaaaaaatgaattt
tacttagttattttgctatcaggcatttaattagcatgttcaggatggtg
ggttctagtgtatcccagacatgaagaggaagtgtgtcaccttgtatatg
aaacgtgacattcctccttagtcagttctccaaggaggaaatataaggct
cgtgcctcaggggagtacacagaatgcataataaaggtatgactgcagct
atcaggacctcggtaaggctgttatcctttgagaacatccgtaccaccct
cagttgaatgtgttccggcattttccaagcgtctcta
gaattccacttttataacaatttttacatgttaaaggttttgtctgtcca
acatcccctaaagaccttcatttggattttcaggaaggaaaaactaccac
tttctacagtgtcgtggggtagaaacagtatacccagctccctactatct
catccacagctccctgataaactcgattaatcttttagaaaccttgactc
aggtcagttgggtactcagtgctttggcctagacaagaatttcagggcta
gtcggtgtgaagcagagccggagtctaataaaaaaaaaaaaaaagcatag
atttcagcacgagagttcagaggaagtggggagacatagaagcaacaaga
cacacctaaaagcaagagtatgggttgtctgagagttttcccacactttc
acaacattcaaatacaccgttttggtggattttgaagttaccatctgaaa
ggtctgctaagggatgtaaacaaggggggagggggagggggctgacagtg
ttggggtccaaaagtcagctcttaaaccacacaaacgcaatctcattaga
tgggggtattaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173046170_173047391
seq2: B6Ng01-038G18.b_47_1233 (reverse)

seq1  TAGAGAGCAGCTTAGGAAAATGCAGGAAACACATTACAAACCTGAGGGTG  50
      ||||||   |||| ||||||||| || |||||||| |||  |||||||| 
seq2  TAGAGA--CGCTT-GGAAAATGCCGG-AACACATT-CAA--CTGAGGGT-  42

seq1  GGTACGGATG-TCTCAAAAGAGTAAGACCAGACACTTAACTGAAGTCACT  99
      |||||||||| ||||||| || |||   |||   | | || || ||| ||
seq2  GGTACGGATGTTCTCAAAGGA-TAA---CAG---CCTTACCGAGGTC-CT  84

seq1  GAATAGCTTCCAGTCATTACCCTTTATTATGCTATTTCTGTGTACTCACT  149
      | ||||| | |||||||   ||||||||||||   |||||||||||| | 
seq2  G-ATAGC-TGCAGTCAT--ACCTTTATTATGC--ATTCTGTGTACTCCCC  128

seq1  TGAGCAACGTAGCC-TATATCTCCTCCTTGGGAGAAACTGACTAAAGAGG  198
      ||||  ||| |||| ||||| |||||||| |||| |||||||||| ||||
seq2  TGAGGCACG-AGCCTTATATTTCCTCCTT-GGAG-AACTGACTAAGGAGG  175

seq1  AAATGTCACCGGTTTCATTATACAAGGTGACACACCTTCCTCTTCATTGT  248
       ||||||||  |||||| |||||||||||||||| ||||||||||| |||
seq2  -AATGTCAC--GTTTCA-TATACAAGGTGACACA-CTTCCTCTTCA-TGT  219

seq1  CTTGGGATACACTTAGAACCCACCATCCTGAACATGCTAATTAAAATGCC  298
      | |||||||||| ||||||||||||||||||||||||||||| ||||| |
seq2  C-TGGGATACAC-TAGAACCCACCATCCTGAACATGCTAATT-AAATG-C  265

seq1  CTGATAGCAAAATAACTAAGTAAAATTCATTTTTTTTAAAAGATATCTTC  348
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  CTGATAGCAAAATAACTAAGTAAAATTCATTTTTTT--AAAGATATCTTC  313

seq1  TGAGAGGCCACACGAGACTGCTCCTGCAACCTCAGATAAGATGCAGTTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCCACACGAGACTGCTCCTGCAACCTCAGATAAGATGCAGTTAA  363

seq1  TGTCCCGTTTTCCCCTGTCACAGAATCAGGGTGGGGCAGCCCATTCACAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCGTTTTCCCCTGTCACAGAATCAGGGTGGGGCAGCCCATTCACAG  413

seq1  ATAAGGGGTCTTGGAGGTCACTTTGACAAGCATGCTGGGGTCTGAAATAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGGTCTTGGAGGTCACTTTGACAAGCATGCTGGGGTCTGAAATAG  463

seq1  AGGAAATGGACAATCTCAGCTCCAGAACCAGTCCCTAGAGATCTCAAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGACAATCTCAGCTCCAGAACCAGTCCCTAGAGATCTCAAACA  513

seq1  ATATGTGACAATTTACCAGTGAAGTATATCTTACAACCGGTGTAATTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGACAATTTACCAGTGAAGTATATCTTACAACCGGTGTAATTTCC  563

seq1  AGTCACGTGAATGAACAGTTCCAGAAAATTCCAGCACCTCAAGCTATCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACGTGAATGAACAGTTCCAGAAAATTCCAGCACCTCAAGCTATCAT  613

seq1  CAATCTTGAGTCTCCAAGTCTTCCTAACTCAAGTGTCACTGATTTTGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTGAGTCTCCAAGTCTTCCTAACTCAAGTGTCACTGATTTTGATT  663

seq1  TTGGAGTAGAGACAAGCTATCCCTATAGGGTGTTGCTACAAAGCCCAGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTAGAGACAAGCTATCCCTATAGGGTGTTGCTACAAAGCCCAGTA  713

seq1  CATAGCCGGCACATGATGGGCTCCCACTTGTCTCCCACTTTTGGAGTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCGGCACATGATGGGCTCCCACTTGTCTCCCACTTTTGGAGTTCT  763

seq1  TTAAATGTCATTTGTTTGTTTATTTATTTAGGTTTTGTTGTTGTTGTTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTCATTTGTTTGTTTATTTATTTAGGTTTTGTTGTTGTTGTTGA  813

seq1  GGGTCTCTCTCTCTTTAGTCCTGGATGTCCTGGAACTCCATATGAGGACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTCTCTCTTTAGTCCTGGATGTCCTGGAACTCCATATGAGGACC  863

seq1  TGTTTGGTTTTATATTTACTTTTTAAAGCTAGATGGGCTCCTTGCTATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTTTTATATTTACTTTTTAAAGCTAGATGGGCTCCTTGCTATCA  913

seq1  ATGTTCTGGAATAGTACAAGATTCCACCAGGCTTGTGTCTTAGTCACTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGGAATAGTACAAGATTCCACCAGGCTTGTGTCTTAGTCACTTT  963

seq1  TCTCATCACTGTGACAAAGTACCGGACAAACGCAACTTATGAAATGAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCACTGTGACAAAGTACCGGACAAACGCAACTTATGAAATGAAGA  1013

seq1  GTGTATTTTGGTTCACAGTTCAAGAGTACAGTCCACCGTGCTGAGGAAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTGGTTCACAGTTCAAGAGTACAGTCCACCGTGCTGAGGAAGT  1063

seq1  TATGGTATCGGGAGTGTGTGGTGGCCGGTCACATTGAATCTTCAGTCAGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTATCGGGAGTGTGTGGTGGCCGGTCACATTGAATCTTCAGTCAGG  1113

seq1  AAGTGGAAGAGAAGAACACAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAGAGAAGAACACAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGG  1163

seq1  CAGGCAGCGTTTTCCATTGAATTC  1222
      ||||||||||||||||||||||||
seq2  CAGGCAGCGTTTTCCATTGAATTC  1187

seq1: chr1_172935075_172935632
seq2: B6Ng01-038G18.g_65_622

seq1  GAATTCCACTTTTATAACAATTTTTACATGTTAAAGGTTTTGTCTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTTATAACAATTTTTACATGTTAAAGGTTTTGTCTGTCCA  50

seq1  ACATCCCCTAAAGACCTTCATTTGGATTTTCAGGAAGGAAAAACTACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCCTAAAGACCTTCATTTGGATTTTCAGGAAGGAAAAACTACCAC  100

seq1  TTTCTACAGTGTCGTGGGGTAGAAACAGTATACCCAGCTCCCTACTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAGTGTCGTGGGGTAGAAACAGTATACCCAGCTCCCTACTATCT  150

seq1  CATCCACAGCTCCCTGATAAACTCGATTAATCTTTTAGAAACCTTGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACAGCTCCCTGATAAACTCGATTAATCTTTTAGAAACCTTGACTC  200

seq1  AGGTCAGTTGGGTACTCAGTGCTTTGGCCTAGACAAGAATTTCAGGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTTGGGTACTCAGTGCTTTGGCCTAGACAAGAATTTCAGGGCTA  250

seq1  GTCGGTGTGAAGCAGAGCCGGAGTCTAATAAAAAAAAAAAAAAAGCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTGTGAAGCAGAGCCGGAGTCTAATAAAAAAAAAAAAAAAGCATAG  300

seq1  ATTTCAGCACGAGAGTTCAGAGGAAGTGGGGAGACATAGAAGCAACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCACGAGAGTTCAGAGGAAGTGGGGAGACATAGAAGCAACAAGA  350

seq1  CACACCTAAAAGCAAGAGTATGGGTTGTCTGAGAGTTTTCCCACACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTAAAAGCAAGAGTATGGGTTGTCTGAGAGTTTTCCCACACTTTC  400

seq1  ACAACATTCAAATACACCGTTTTGGTGGATTTTGAAGTTACCATCTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTCAAATACACCGTTTTGGTGGATTTTGAAGTTACCATCTGAAA  450

seq1  GGTCTGCTAAGGGATGTAAACAAGGGGGGAGGGGGAGGGGGCTGACAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCTAAGGGATGTAAACAAGGGGGGAGGGGGAGGGGGCTGACAGTG  500

seq1  TTGGGGTCCAGAAGTCACCTAGCAAACCACACAAACGCAATCTCAGTAGA  550
      |||||||||| |||||| ||   |||||||||||||||||||||| ||||
seq2  TTGGGGTCCAAAAGTCAGCTCTTAAACCACACAAACGCAATCTCATTAGA  550

seq1  TGGGGGTA  558
      ||||||||
seq2  TGGGGGTA  558