BAC Information

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BAC

Clone NameB6Ng01-038J12
Chromosome1 (Build37)
Map Location 114,321,667 - 114,440,663
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038J12.bB6Ng01-038J12.g
ACCDH866112DH866113
length1,125973
definitionDH866112|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J12, 5' end.DH866113|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,321,667 - 114,322,806)(114,440,146 - 114,440,663)
sequence
gaattctccacacttcattcaaaacatctgagaaaatacacaagctctaa
agggttttgttaagagccatacataaccctcatatgcaaaggggcctgca
tatgagaaagatgctgaaagacgttaataaagcaattgtcctgagctacc
taatgaccctctaagtgacaaaacactacactaggagccgagtaaattca
atctgaaattcatatttcaatagaggcatctgaaaatgttgactttatca
gccaacagggaagcaaaacatacactgtggactaaaattaccgtggccta
aaatcatttggctcaaattcaagaaagtttagaaaacagctctggtagta
taggacagtacattcattcacaatgccccataaatgagtctgttttcagg
caagaaagacaaaactgttatccttgtgctctgaggcaggaccacaaggg
gaaagagaagaaggtagagagaggagaaaatgttatggggtaggaatctt
gaaaacatggccataagggctggccagttggagtaagagcagcctagatg
aatatgacaagtcatattgcgggattattggcagggagtagaaataatag
catagagggtatatatctgcccagctctagtatggattaagctgtcttat
gaatataaaagttttgtcttttatctgggaactgaatgatcaaagatggt
gtagaaacccccaactgatgattaaatatttattacaatacagtctatat
ttgatgctcctgtccctggttagtcagaagatcattatgctctagtgcat
tttcccaagtggtcactgcactcagaagccaagctcactcgcttttcctc
tccctctccttctccttcctcctctactatgctaccatagttctaagcaa
caatatgggtactggtattccatgtgacctcatatattcacactcgatct
gtgatgtcccctttacagccctttacatggtacttcgtctcccctcctga
ggtctaaagcacagccactaatgcctttaatatctaggtctttttattcc
tcagtagcacctagcaggtcagccactgccaccatcagcttcacttcttg
ggcacagaggaatggtggcctctgc
gaattcttaccaaagtgtcttgaggctcattaaatgtgagcactaattta
taggaacagagagcttgttagatgagaccaaagggatgactgtaatgtct
gcatgatgaatatgtttcctttaatacactgctgcaagataataaaaagt
gatagaagagagatcattaattcaagacaaactaataagaaactttgcca
ttgattgtttgcttgaaaagctgaaacaagcaaacttgtatccaacaact
aataagccaacttcaacactatctcatattttgcaaattgatttattaga
tttattataatgtagctacttaagagtaatagtgggtattccaaaatttg
gcctatatccacttatcagtggacctcctagagaatcacccttctcctca
gcttctttcagccttccctaattgaacaacaggggtcagctgcttctttc
cattggttggatacatctgattctttcagctgcttgttgggtcttttgga
gggcagtcatgacagatcctttttgggagcactccatagcataagtaata
gtgttagttaggctttgggactgttgcttgacctggcacaggggggaatt
tcctaaacagaactccaatggctcatgctctaagatcaagaatagataaa
tgggacctcatacaactggaaaggttctgaaaggcaaaggacacagtcaa
taagacaaatctgcaacctagagattggaagaaatcttcactagtccccc
atccgatagagggcaatatacacaatatataaagaactcaagaagtcaaa
catcaaaaaacaaaacaacccaatcaaaaactggagtatagaacaaaacc
aagaattcacaactgagaaatcttgaatggctgaagaagcacttaaagaa
aattcaaagtccttagtgatcagagaaatgcaaatcaaatgacactgaga
ttcaccttataccagtcagaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114321667_114322806
seq2: B6Ng01-038J12.b_48_1172

seq1  GAATTCTCCACACTTCATTCAAAACATCTGAGAAAATACACAAGCTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACACTTCATTCAAAACATCTGAGAAAATACACAAGCTCTAA  50

seq1  AGGGTTTTGTTAAGAGCCATACATAACCCTCATATGCAAAGGGGCCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTGTTAAGAGCCATACATAACCCTCATATGCAAAGGGGCCTGCA  100

seq1  TATGAGAAAGATGCTGAAAGACGTTAATAAAGCAATTGTCCTGAGCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAAGATGCTGAAAGACGTTAATAAAGCAATTGTCCTGAGCTACC  150

seq1  TAATGACCCTCTAAGTGACAAAACACTACACTAGGAGCCGAGTAAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACCCTCTAAGTGACAAAACACTACACTAGGAGCCGAGTAAATTCA  200

seq1  ATCTGAAATTCATATTTCAATAGAGGCATCTGAAAATGTTGACTTTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAATTCATATTTCAATAGAGGCATCTGAAAATGTTGACTTTATCA  250

seq1  GCCAACAGGGAAGCAAAACATACACTGTGGACTAAAATTACCGTGGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGGGAAGCAAAACATACACTGTGGACTAAAATTACCGTGGCCTA  300

seq1  AAATCATTTGGCTCAAATTCAAGAAAGTTTAGAAAACAGCTCTGGTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTGGCTCAAATTCAAGAAAGTTTAGAAAACAGCTCTGGTAGTA  350

seq1  TAGGACAGTACATTCATTCACAATGCCCCATAAATGAGTCTGTTTTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGTACATTCATTCACAATGCCCCATAAATGAGTCTGTTTTCAGG  400

seq1  CAAGAAAGACAAAACTGTTATCCTTGTGCTCTGAGGCAGGACCACAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGACAAAACTGTTATCCTTGTGCTCTGAGGCAGGACCACAAGGG  450

seq1  GAAAGAGAAGAAGGTAGAGAGAGGAGAAAATGTTATGGGGTAGGAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAAGAAGGTAGAGAGAGGAGAAAATGTTATGGGGTAGGAATCTT  500

seq1  GAAAACATGGCCATAAGGGCTGGCCAGTTGGAGTAAGAGCAGCCTAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATGGCCATAAGGGCTGGCCAGTTGGAGTAAGAGCAGCCTAGATG  550

seq1  AATATGACAAGTCATATTGCGGGATTATTGGCAGGGAGTAGAAATAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGACAAGTCATATTGCGGGATTATTGGCAGGGAGTAGAAATAATAG  600

seq1  CATAGAGGGTATATATCTGCCCAGCTCTAGTATGGATTAAGCTGTCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGGGTATATATCTGCCCAGCTCTAGTATGGATTAAGCTGTCTTAT  650

seq1  GAATATAAAAGTTTTGTCTTTTATCTGGGAACTGAATGATCAAAGATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAAAGTTTTGTCTTTTATCTGGGAACTGAATGATCAAAGATGGT  700

seq1  GTAGAAACCCCCAACTGATGATTAAATATTTATTACAATACAGTCTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACCCCCAACTGATGATTAAATATTTATTACAATACAGTCTATAT  750

seq1  TTGATGCTCCTGTCCCTGGTTAGTCAGAAGATCATTATGCTCTAGTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTCCTGTCCCTGGTTAGTCAGAAGATCATTATGCTCTAGTGCAT  800

seq1  TTTCCCAAGTGGTCACTGCACTCAGAAGCCAAGCTCACTCGCTTTTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGTGGTCACTGCACTCAGAAGCCAAGCTCACTCGCTTTTCCTC  850

seq1  TCCCTCTCCTTCTCCTTCCTCCTCTACTATGCTACCATAGTTCTAAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCCTTCTCCTTCCTCCTCTACTATGCTACCATAGTTCTAAGCAA  900

seq1  CAATATGGGTACTGGTATTCCATGTGACCTCATATATTCACACTCGATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGGGTACTGGTATTCCATGTGACCTCATATATTCACACTCGATCT  950

seq1  GTGATGTCCCCTTTACAGCCCTTTTACATGGTACTTCCGTCCTCCCCTCC  1000
      ||||||||||||||||||||| |||||||||||||| ||| |||||||||
seq2  GTGATGTCCCCTTTACAGCCC-TTTACATGGTACTT-CGT-CTCCCCTCC  997

seq1  TGAGGTCCTAAAGCAACAGCCACTAATGCCTTTAATATCTAGGTCTATTT  1050
      |||||| ||||||| ||||||||||||||||||||||||||||||| |||
seq2  TGAGGT-CTAAAGC-ACAGCCACTAATGCCTTTAATATCTAGGTCTTTTT  1045

seq1  ATTCCTCAGTAGCAACCTAAGCCAGGTCAGCACACTGCACACCAATCCAG  1100
      ||||||||||||| |||||   ||||||||| |||||| |||||   |||
seq2  ATTCCTCAGTAGC-ACCTA--GCAGGTCAGC-CACTGC-CACCA--TCAG  1088

seq1  CTTCACTTCTTGGAGCACAGAGAGAATGGTTGCCCTCTGC  1140
      ||||||||||||| |||||||| |||||| || |||||||
seq2  CTTCACTTCTTGG-GCACAGAG-GAATGG-TGGCCTCTGC  1125

seq1: chr1_114440146_114440663
seq2: B6Ng01-038J12.g_68_585 (reverse)

seq1  GATCTGTCATGACTGCCCTCCAAAAGACCCAACAAGCAGCTGAAAGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCATGACTGCCCTCCAAAAGACCCAACAAGCAGCTGAAAGAATC  50

seq1  AGATGTATCCAACCAATGGAAAGAAGCAGCTGACCCCTGTTGTTCAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATCCAACCAATGGAAAGAAGCAGCTGACCCCTGTTGTTCAATTA  100

seq1  GGGAAGGCTGAAAGAAGCTGAGGAGAAGGGTGATTCTCTAGGAGGTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCTGAAAGAAGCTGAGGAGAAGGGTGATTCTCTAGGAGGTCCAC  150

seq1  TGATAAGTGGATATAGGCCAAATTTTGGAATACCCACTATTACTCTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTGGATATAGGCCAAATTTTGGAATACCCACTATTACTCTTAAG  200

seq1  TAGCTACATTATAATAAATCTAATAAATCAATTTGCAAAATATGAGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACATTATAATAAATCTAATAAATCAATTTGCAAAATATGAGATAG  250

seq1  TGTTGAAGTTGGCTTATTAGTTGTTGGATACAAGTTTGCTTGTTTCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGTTGGCTTATTAGTTGTTGGATACAAGTTTGCTTGTTTCAGCT  300

seq1  TTTCAAGCAAACAATCAATGGCAAAGTTTCTTATTAGTTTGTCTTGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCAAACAATCAATGGCAAAGTTTCTTATTAGTTTGTCTTGAATT  350

seq1  AATGATCTCTCTTCTATCACTTTTTATTATCTTGCAGCAGTGTATTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTCTCTTCTATCACTTTTTATTATCTTGCAGCAGTGTATTAAAG  400

seq1  GAAACATATTCATCATGCAGACATTACAGTCATCCCTTTGGTCTCATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATATTCATCATGCAGACATTACAGTCATCCCTTTGGTCTCATCTA  450

seq1  ACAAGCTCTCTGTTCCTATAAATTAGTGCTCACATTTAATGAGCCTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCTCTGTTCCTATAAATTAGTGCTCACATTTAATGAGCCTCAAG  500

seq1  ACACTTTGGTAAGAATTC  518
      ||||||||||||||||||
seq2  ACACTTTGGTAAGAATTC  518