BAC Information

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BAC

Clone NameB6Ng01-039E19
Chromosome1 (Build37)
Map Location 17,986,388 - 17,987,455
singlet/doubletsinglet
Overlap genenone
Upstream geneJph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564
Downstream geneLOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039E19.bB6Ng01-039E19.g
ACCDH866605DH866606
length8141,062
definitionDH866605|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E19, 5' end.DH866606|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaacagaggaatcttgaatgggtgagaagcacttaaagaaatg
ttcaaagtccttaattttcagggaaatacaaatcaaaacgactctgaaat
ttcaccttacaccaatcagaatggctaggatcaaaacctcaagtgacagc
acatgttggtgaacatgtggagaaacaggaacactcttccatttctgatg
ggattgcaaactagtataaccactctggaaatcaatctggaggttcctca
gaaaattggaaatagatcgaccttaagacccagctatacaactcttcgac
atatacccaaaagatgccccagcatgccacaaagtcacatgttccactat
gttcattgcagacttgtttgttacagtcagaatctggaaacaatccagat
gtcccacttcagaagaatggatacagaaaatgtggttcatttacacaatg
gaatactactcagctgtcaagaatgagaacattctcagcttttcccacaa
atgggtggaactagaaaatatcatctgagtgaggttactcagatccaaaa
agaaatgcatggcatgtactcactataagtggatattagccaaaaaagta
cagaataccgagaatacagtctatagaacacaaaaagtttaacaagctga
agagcccaaatgagaattcctcaattccacttgggagggagaagaaagca
atcacaggaggtgaagggtgggagggagggacaagtaggagtgggaaacg
ggacaagtaggagaagaagggaaacatgataaggtactcgttggggcgta
gttactgatttctt

gaattcttaaaatagtggattaggtgagactttgaccggttatcaaaaaa
acaaaaacaaaacaaacaaacaaaaaaccaagattttggggaatctcttg
gcactgtatcctggaaatttcatgccctgcattgagaagttgtattctgt
ctccttttagaatctgtcccagtcacttcaggagactttggagaattctc
acaagctgtttctctgtaactgtctcttttaagagttctttcctcccagg
ttttaacctcattggagagttgagagttatcacttaatagctgattattt
tgctttctaagctgctcattttgctgctttaacttagaaatttcactttc
catcctattatattcacttttcaaaataaaagcttttgtgctttgtacaa
ttccactgccacctccacaggttagaggtttactcagaagctgagagtct
tgttctgatatcattgaggtatcttgggcctattgatttcttctaagatt
ttctcttatcatttcttcttaatgtacaacagtggcttttatagaaagaa
ttttctttttagattccttggcctttgccttcttctttaggtccctcttc
atcagctgcatcttgagatcatcaaattcttctttatagggcacagctcc
taaagcagttttgtcctttgaggtcagttgttcaactcctgatgcaacac
gaggatgctcactgtcccatgtggaaggctacacagtaggatggagatgc
acaacaaactgggaggcagtcagtgtctggtagacttcagatagttgttc
agttgtttctttcagtgacttcaggtaatgttccaattctttggatctgg
taacatttatcatggcagtgattttgctgtcatagaagttattcctgcac
caatgcttttgttttctttctggatgctacttttaagactttctgtatca
aaataaaaagagtatttagccattttccccaaaactcagttatttctttc
ctattactagtacttgttggactaggtttttatggtgagagtcattttct
gaagatctttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17986388_17987455
seq2: B6Ng01-039E19.g_65_1126 (reverse)

seq1  TCAAAGATTCTTCAGAAAATGACTTCCTCACCATAAAAACTTAGTCCAAC  50
      ||||||| ||||||||||||||||  |||||||||||||| |||||||||
seq2  TCAAAGA-TCTTCAGAAAATGACT--CTCACCATAAAAACCTAGTCCAAC  47

seq1  AAGTACTAAGTAATAGGAAAGAAATAACTGAGTTTTGGGGAAAATGGCTA  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACT-AGTAATAGGAAAGAAATAACTGAGTTTTGGGGAAAATGGCTA  96

seq1  AATACTCTTTTTTATTTTGATACAGAAAGTCTTAAAAGTAGCATCCAGAA  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTC-TTTTTATTTTGATACAGAAAGTCTTAAAAGTAGCATCCAGAA  145

seq1  AGAAAACAAAAGCATTGGGTGCAGGAATAACTTCTATGACAGCAAAATCA  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAAAACAAAAGCATT-GGTGCAGGAATAACTTCTATGACAGCAAAATCA  194

seq1  CTGCCATGATAAATGTTACCAGATCCAAAGAATTGGAACATTACCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGATAAATGTTACCAGATCCAAAGAATTGGAACATTACCTGAAG  244

seq1  TCACTGAAAGAAACAACTGAACAACTATCTGAAGTCTACCAGACACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAAGAAACAACTGAACAACTATCTGAAGTCTACCAGACACTGAC  294

seq1  TGCCTCCCAGTTTGTTGTGCATCTCCATCCTACTGTGTAGCCTTCCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAGTTTGTTGTGCATCTCCATCCTACTGTGTAGCCTTCCACAT  344

seq1  GGGACAGTGAGCATCCTCGTGTTGCATCAGGAGTTGAACAACTGACCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTGAGCATCCTCGTGTTGCATCAGGAGTTGAACAACTGACCTCA  394

seq1  AAGGACAAAACTGCTTTAGGAGCTGTGCCCTATAAAGAAGAATTTGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAAACTGCTTTAGGAGCTGTGCCCTATAAAGAAGAATTTGATGA  444

seq1  TCTCAAGATGCAGCTGATGAAGAGGGACCTAAAGAAGAAGGCAAAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGATGCAGCTGATGAAGAGGGACCTAAAGAAGAAGGCAAAGGCCA  494

seq1  AGGAATCTAAAAAGAAAATTCTTTCTATAAAAGCCACTGTTGTACATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTAAAAAGAAAATTCTTTCTATAAAAGCCACTGTTGTACATTAA  544

seq1  GAAGAAATGATAAGAGAAAATCTTAGAAGAAATCAATAGGCCCAAGATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATGATAAGAGAAAATCTTAGAAGAAATCAATAGGCCCAAGATAC  594

seq1  CTCAATGATATCAGAACAAGACTCTCAGCTTCTGAGTAAACCTCTAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGATATCAGAACAAGACTCTCAGCTTCTGAGTAAACCTCTAACCT  644

seq1  GTGGAGGTGGCAGTGGAATTGTACAAAGCACAAAAGCTTTTATTTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTGGCAGTGGAATTGTACAAAGCACAAAAGCTTTTATTTTGAAA  694

seq1  AGTGAATATAATAGGATGGAAAGTGAAATTTCTAAGTTAAAGCAGCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATATAATAGGATGGAAAGTGAAATTTCTAAGTTAAAGCAGCAAAA  744

seq1  TGAGCAGCTTAGAAAGCAAAATAATCAGCTATTAAGTGATAACTCTCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCTTAGAAAGCAAAATAATCAGCTATTAAGTGATAACTCTCAAC  794

seq1  TCTCCAATGAGGTTAAAACCTGGGAGGAAAGAACTCTTAAAAGAGACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAATGAGGTTAAAACCTGGGAGGAAAGAACTCTTAAAAGAGACAGT  844

seq1  TACAGAGAAACAGCTTGTGAGAATTCTCCAAAGTCTCCTGAAGTGACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACAGCTTGTGAGAATTCTCCAAAGTCTCCTGAAGTGACTGG  894

seq1  GACAGATTCTAAAAGGAGACAGAATACAACTTCTCAATGCAGGGCATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATTCTAAAAGGAGACAGAATACAACTTCTCAATGCAGGGCATGAA  944

seq1  ATTTCCAGGATACAGTGCCAAGAGATTCCCCAAAATCTTGGTTTTTTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGGATACAGTGCCAAGAGATTCCCCAAAATCTTGGTTTTTTGTT  994

seq1  TGTTTGTTTTGTTTTTGTTTTTTTGATAACCGGTCAAAGTCTCACCTAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTGTTTTTGTTTTTTTGATAACCGGTCAAAGTCTCACCTAAT  1044

seq1  CCACTATTTTAAGAATTC  1068
      ||||||||||||||||||
seq2  CCACTATTTTAAGAATTC  1062


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