BAC Information

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BAC

Clone NameB6Ng01-039E24
Chromosome1 (Build37)
Map Location 37,960,955 - 38,093,752
singlet/doubletdoublet
Overlap geneGm776, 2300002O18Rik, Txndc9, EG666434, Eif5b
Upstream geneTmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30
Downstream geneRev1, EG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039E24.bB6Ng01-039E24.g
ACCDH866615DH866616
length1,1851,167
definitionDH866615|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E24, 5' end.DH866616|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,092,568 - 38,093,752)(37,960,955 - 37,962,126)
sequence
gaattcagtcctacatttgaagcaagcactgtatctatagtcatacctcc
agtccttaaactacgctttatcttacacttaactgacagaacttgattta
aataggagaagtgcaacagcgaagcaggcacaggcacttgctacaatcct
agcactgagggacagatgcagaagagtcaaggccggtctaggctacccga
ccctgtcttcaaaggaatgaaaacataaaaaccagacaaaaagaaaaaat
aagccaagaagcttcatcagcactcagatttcaaacactgagacaggtgc
ttacatcagccatctctacacacaaggcaagcatctgccccttgagagcc
acgctcaacacaccagacatctctaagccaccacccaacaggatattgat
atctggaacaaatgatcagactctgatgaagcaggccccatcctgtctaa
aggaaaagggacgctcccggtttagaacagtgtcaagaacacagcttggt
ccaacattacaaaaactggagagatattagtcatgttaatatttgttaaa
gcactgactctaagcctttagctatacaagcgaatgagcacaaagggctg
aggaaggaagcaaagacagagtgcggacagatacctcaatcctccgtttc
gctttgtcgtacgcccgctcttctttagtccgatcgtcgtcggagtcgta
ctcggagtctgagctagcgtctttgctgggcttcgtgtctccagccttcc
ctgagtccttctcatccgacagcttgcagtcctcctcgtccccatcgctg
ccttcactgtccccttcctcttcttcatcttcactctcttcttcctcctc
ctcttcttcttcctcttcttcttcctcagggttttcttctacttctatgt
gaatcatatttccttctttgaggaaaacaaattgattttaaataaagtta
acatcatagatttataccaaaggaacagagactacaagtacggaaaaata
acagtgaaattacactaattacaggcagtcgccctacactttgttcctga
taataccaagtattcattcttgtagtcagtgaagacttccacccagcagt
gagaactggagcactacattccagggaccttgggcaggcttgacgcagga
cagtctcagctcagccacaacacggaggcttctgt
gaattctagcagctggcaaatgaattgaatcactaggcttttagatctcg
cttcagaaacaaggaactagtgtgaatcggaagagagtttggccacacag
ttaatgacaaaccttggtaccttcctgaaggaagcagttttaggaatcct
gatgttgttctgctctttacagaattgtaagaaagatgggaattgtattg
aaacatgggttcatgacagagacacagaagaaagcatgctggctccgtga
actgcctgccttcctgaccagaacttttctatatattacaaacaaagaac
agaccgcctttgcttttaagcaaggggctgcacagtgttttaggaatcta
agagaaaggacagtggtcttatgtcaattataaaagaaatatagaggaag
ggaaggaggaattagacagaggtcagagaaattgaacctttgtagaaatc
caagcttgatacaatggggagtaggaaataacttttgatctattaatttt
gtgccaaactgaaacagaatcaaattcaaaatgtcatcctgtctggtatt
tctgcaaccacaaggctttctgacaccaatcttaaggaagaagatactta
gtttaaagaaaattgggggctggagagatggctcaatggttaagagtacc
gactgctcttccaaaggtcctgagttcaaatcccagcaaccacatggtgg
ctcccagacttccctaatgagatctgacgccctcttctggtgcatctgaa
gacagctacagtgtacttatgtataataataaataaatctttaaaaaaaa
agaagaaaattgatttcatcataatgttaggttttagtttctcataaaat
tactgtttgcttgctgtgttcctctttcactattcttgtgtaatcaagga
agctttagaagaaaatgtatcttgaaagctgggtaatcaatgataaagtt
ctgaggaatgattttgtgtctaatatagcctgtgagagacacagggttgt
cagactagggccagccatacgagatgtgcttcattctcttcatgaaacaa
actgggatggggcttccttctgaagcttcctcgaatggtctttacatcgc
caggctgcaagctcggactcagcaaggggctggttctgggcatcttaggg
actaactctgcatattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_38092568_38093752
seq2: B6Ng01-039E24.b_47_1231 (reverse)

seq1  ACAGGAGCCTCCGTGTTGT-GCTGAGCTGAG-CTGTCCTGCTGTC-AGCC  47
      |||| |||||||||||||| ||||||||||| ||||||||| ||| ||||
seq2  ACAGAAGCCTCCGTGTTGTGGCTGAGCTGAGACTGTCCTGC-GTCAAGCC  49

seq1  TGCCCAGGGT-CCTGGAATGTAGTGGCCTCAGTTCTCACTGCTGGGTGGT  96
      |||||| ||| ||||||||||||| ||  |||||||||||||||||||| 
seq2  TGCCCAAGGTCCCTGGAATGTAGT-GCTCCAGTTCTCACTGCTGGGTGGA  98

seq1  AGTCTTCACTGACTACA--GATGAATACTTGGTATTTATCAGGAACAAAG  144
      |||||||||||||||||   |||||||||||||| |||||||||||||||
seq2  AGTCTTCACTGACTACAAGAATGAATACTTGGTA-TTATCAGGAACAAAG  147

seq1  TGTAGGGCGACTG-CTGTAATTAGTGTAATTTCACTGTTATTTTTCCGTA  193
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGCGACTGCCTGTAATTAGTGTAATTTCACTGTTATTTTTCCGTA  197

seq1  CTTTGTAGTCTCTGTTCTTTTGGTATAAATCTATGATGTTAACTTTTATT  243
      | ||||||||||||||| ||||||||||||||||||||||||||||   |
seq2  C-TTGTAGTCTCTGTTCCTTTGGTATAAATCTATGATGTTAACTTT--AT  244

seq1  TTAAAATCAATTTGTTTTTCCTCAAAGAAGGAAATATGATTCACATAGAA  293
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTAAAATCAATTTG-TTTTCCTCAAAGAAGGAAATATGATTCACATAGAA  293

seq1  GTAGAAGAAAACCCTGAGGAAGAAGAAGAGGAAGAAGAAGAGGAGGAGGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGAAAACCCTGAGGAAGAAGAAGAGGAAGAAGAAGAGGAGGAGGA  343

seq1  AGAAGAGAGTGAAGATGAAGAAGAGGAAGGGGACAGTGAAGGCAGCGATG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGTGAAGATGAAGAAGAGGAAGGGGACAGTGAAGGCAGCGATG  393

seq1  GGGACGAGGAGGACTGCAAGCTGTCGGATGAGAAGGACTCAGGGAAGGCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGAGGAGGACTGCAAGCTGTCGGATGAGAAGGACTCAGGGAAGGCT  443

seq1  GGAGACACGAAGCCCAGCAAAGACGCTAGCTCAGACTCCGAGTACGACTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACGAAGCCCAGCAAAGACGCTAGCTCAGACTCCGAGTACGACTC  493

seq1  CGACGACGATCGGACTAAAGAAGAGCGGGCGTACGACAAAGCGAAACGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGACGATCGGACTAAAGAAGAGCGGGCGTACGACAAAGCGAAACGGA  543

seq1  GGATTGAGGTATCTGTCCGCACTCTGTCTTTGCTTCCTTCCTCAGCCCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAGGTATCTGTCCGCACTCTGTCTTTGCTTCCTTCCTCAGCCCTT  593

seq1  TGTGCTCATTCGCTTGTATAGCTAAAGGCTTAGAGTCAGTGCTTTAACAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCATTCGCTTGTATAGCTAAAGGCTTAGAGTCAGTGCTTTAACAA  643

seq1  ATATTAACATGACTAATATCTCTCCAGTTTTTGTAATGTTGGACCAAGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACATGACTAATATCTCTCCAGTTTTTGTAATGTTGGACCAAGCT  693

seq1  GTGTTCTTGACACTGTTCTAAACCGGGAGCGTCCCTTTTCCTTTAGACAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGACACTGTTCTAAACCGGGAGCGTCCCTTTTCCTTTAGACAG  743

seq1  GATGGGGCCTGCTTCATCAGAGTCTGATCATTTGTTCCAGATATCAATAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGCCTGCTTCATCAGAGTCTGATCATTTGTTCCAGATATCAATAT  793

seq1  CCTGTTGGGTGGTGGCTTAGAGATGTCTGGTGTGTTGAGCGTGGCTCTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGGTGGTGGCTTAGAGATGTCTGGTGTGTTGAGCGTGGCTCTCA  843

seq1  AGGGGCAGATGCTTGCCTTGTGTGTAGAGATGGCTGATGTAAGCACCTGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGATGCTTGCCTTGTGTGTAGAGATGGCTGATGTAAGCACCTGT  893

seq1  CTCAGTGTTTGAAATCTGAGTGCTGATGAAGCTTCTTGGCTTATTTTTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTTTGAAATCTGAGTGCTGATGAAGCTTCTTGGCTTATTTTTTC  943

seq1  TTTTTGTCTGGTTTTTATGTTTTCATTCCTTTGAAGACAGGGTCGGGTAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTGGTTTTTATGTTTTCATTCCTTTGAAGACAGGGTCGGGTAG  993

seq1  CCTAGACCGGCCTTGACTCTTCTGCATCTGTCCCTCAGTGCTAGGATTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACCGGCCTTGACTCTTCTGCATCTGTCCCTCAGTGCTAGGATTGT  1043

seq1  AGCAAGTGCCTGTGCCTGCTTCGCTGTTGCACTTCTCCTATTTAAATCAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGCCTGTGCCTGCTTCGCTGTTGCACTTCTCCTATTTAAATCAA  1093

seq1  GTTCTGTCAGTTAAGTGTAAGATAAAGCGTAGTTTAAGGACTGGAGGTAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCAGTTAAGTGTAAGATAAAGCGTAGTTTAAGGACTGGAGGTAT  1143

seq1  GACTATAGATACAGTGCTTGCTTCAAATGTAGGACTGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATAGATACAGTGCTTGCTTCAAATGTAGGACTGAATTC  1185

seq1: chr1_37960955_37962126
seq2: B6Ng01-039E24.g_70_1236

seq1  GAATTCTAGCAGCTGGCAAATGAATTGAATCACTAGGCTTTTAGATCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCAGCTGGCAAATGAATTGAATCACTAGGCTTTTAGATCTCG  50

seq1  CTTCAGAAACAAGGAACTAGTGTGAATCGGAAGAGAGTTTGGCCACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAACAAGGAACTAGTGTGAATCGGAAGAGAGTTTGGCCACACAG  100

seq1  TTAATGACAAACCTTGGTACCTTCCTGAAGGAAGCAGTTTTAGGAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACAAACCTTGGTACCTTCCTGAAGGAAGCAGTTTTAGGAATCCT  150

seq1  GATGTTGTTCTGCTCTTTACAGAATTGTAAGAAAGATGGGAATTGTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTTCTGCTCTTTACAGAATTGTAAGAAAGATGGGAATTGTATTG  200

seq1  AAACATGGGTTCATGACAGAGACACAGAAGAAAGCATGCTGGCTCCGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGGTTCATGACAGAGACACAGAAGAAAGCATGCTGGCTCCGTGA  250

seq1  ACTGCCTGCCTTCCTGACCAGAACTTTTCTATATATTACAAACAAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGCCTTCCTGACCAGAACTTTTCTATATATTACAAACAAAGAAC  300

seq1  AGACCGCCTTTGCTTTTAAGCAAGGGGCTGCACAGTGTTTTAGGAATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGCCTTTGCTTTTAAGCAAGGGGCTGCACAGTGTTTTAGGAATCTA  350

seq1  AGAGAAAGGACAGTGGTCTTATGTCAATTATAAAAGAAATATAGAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGACAGTGGTCTTATGTCAATTATAAAAGAAATATAGAGGAAG  400

seq1  GGAAGGAGGAATTAGACAGAGGTCAGAGAAATTGAACCTTTGTAGAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGGAATTAGACAGAGGTCAGAGAAATTGAACCTTTGTAGAAATC  450

seq1  CAAGCTTGATACAATGGGGAGTAGGAAATAACTTTTGATCTATTAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGATACAATGGGGAGTAGGAAATAACTTTTGATCTATTAATTTT  500

seq1  GTGCCAAACTGAAACAGAATCAAATTCAAAATGTCATCCTGTCTGGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAACTGAAACAGAATCAAATTCAAAATGTCATCCTGTCTGGTATT  550

seq1  TCTGCAACCACAAGGCTTTCTGACACCAATCTTAAGGAAGAAGATACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAACCACAAGGCTTTCTGACACCAATCTTAAGGAAGAAGATACTTA  600

seq1  GTTTAAAGAAAATTGGGGGCTGGAGAGATGGCTCAATGGTTAAGAGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGAAAATTGGGGGCTGGAGAGATGGCTCAATGGTTAAGAGTACC  650

seq1  GACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGG  700

seq1  CTCCCAGACTTCCCTAATGAGATCTGACGCCCTCTTCTGGTGCATCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGACTTCCCTAATGAGATCTGACGCCCTCTTCTGGTGCATCTGAA  750

seq1  GACAGCTACAGTGTACTTATGTATAATAATAAATAAATCTTTAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTACAGTGTACTTATGTATAATAATAAATAAATCTTTAAAAAAAA  800

seq1  AGAAGAAAATTGATTTCATCATAATGTTAGGTTTTAG-TTCTCATAAAAT  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGAAAATTGATTTCATCATAATGTTAGGTTTTAGTTTCTCATAAAAT  850

seq1  TACTGTTTGCTTGCTGTGTTCCTCTTTCACTATTCTTGTGTAATCAAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTGCTTGCTGTGTTCCTCTTTCACTATTCTTGTGTAATCAAGGA  900

seq1  AGGCTTTAGAAGAAAATGTATCTTGAAAAGCTGGGTAATCAATGAATAAA  949
      | ||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  A-GCTTTAGAAGAAAATGTATCTTG-AAAGCTGGGTAATCAATG-ATAAA  947

seq1  GTTCCTGAGGAAATGATTTTGTGTCTAAATATAGCCTGTGAGAGACACA-  998
      ||| |||||| ||||||||||||||| |||||||||||||||||||||| 
seq2  GTT-CTGAGG-AATGATTTTGTGTCT-AATATAGCCTGTGAGAGACACAG  994

seq1  GGTTGTCAGACTAGGCCAAGCCATACCGAGATGTGCTTCCATCTC-TCAT  1047
      ||||||||||||||| | ||||||| |||||||||||||  |||| ||||
seq2  GGTTGTCAGACTAGGGCCAGCCATA-CGAGATGTGCTTCATTCTCTTCAT  1043

seq1  GAAACAAAACTGGATGGTGTCTCCCTTCTGAAGCTTCCCTCG-ATGCTC-  1095
      ||||||||   |||||| | || ||||||||||||| ||||| ||| || 
seq2  GAAACAAACTGGGATGG-GGCTTCCTTCTGAAGCTT-CCTCGAATGGTCT  1091

seq1  TTACATCCGCCA-GCTGCAAGCCCTGGCCTCAGC-AGGGGCTGGTCCCTG  1143
      |||||| ||||| ||||||||| | || |||||| ||||||||||  |||
seq2  TTACAT-CGCCAGGCTGCAAGCTC-GGACTCAGCAAGGGGCTGGT-TCTG  1138

seq1  GCAATCTTAGGCACTAACTCTGCATATTC  1172
      |  |||||||| |||||||||||||||||
seq2  GGCATCTTAGGGACTAACTCTGCATATTC  1167