BAC Information

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BAC

Clone NameB6Ng01-039N11
Chromosome1 (Build37)
Map Location 118,683,014 - 118,824,577
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039N11.bB6Ng01-039N11.g
ACCDH866988DH866989
length799703
definitionDH866988|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N11, 5' end.DH866989|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,683,014 - 118,683,812)(118,823,997 - 118,824,577)
sequence
gaattcaatgaaaatgataacacaccatacctaaacttctagaatacaag
aaaaaaatactgagaagaaaattcatagcactaagtgccctcataaagaa
attggagagattctacactagcaacttcagagcacacctgaaagccctag
aacaaaagaagcaaatgaccaagagaagtaaaccataggagactgccaaa
atcaaccaaatggaaacaaagaaaactatacaagactcaactaatcaaaa
atataagcatgaactcagattcacatcaccatccttgattcacaatccat
tattccaacttcaaaatacagacttagaacatgagtatttaaatgagatt
gcccttccaagctcacacatttgaatacttattctccagttggtggtgct
gtttgaagaagcttacttggtggtgttattctggaagaagtgtggaactt
gagacagactttgagaatttaaagacatcatagagagacacaatactgca
catctgtaatttcattatacttaaaggaaggtgggagacagaggcagggg
aactctttgttaacattaatttacggatcttatctttatttgttcccatt
gttgctttcaattaacttacaaaaagatctatttagtttatgaagaacct
taagccttggctggacagtttctgagctattctaactcccttagactgct
aatatccagatacatgtcctgtcatttggcatttgtgtcttttcctggct
cttccttgtctctccacattctccctctccctctccctctccctctccc
gaattcatctggaagaccaagagagccaactaacctggatcctttaaggc
tcccagagattgaatcaccaaacaaagaacaagcataggctggatgtagg
ctccctgcacatatgaacctgatgagcagctgggtctttatgtgggcccc
ccaacaactggagcaggtgctatccttgagcctattgcctacctgcctgt
ggatcatgtgcctctaaatgaacatccttttctgacctcagtgagagagg
atgttcctagtgctgcagggacttgatatgtgcttgggtgctatgcttac
acctgaaagtggggtaatgtgggtaggagttgcatgagggggtactgaga
ggagagtaagggctagtattggatgtcaggatttggcctccattctcccc
taacaaatggatatgtatacaaaaacacatgtagtatacatattcacaaa
taaattacatttatattaattaagtattatgtctttggagagttttggta
attgagtgatatgtaaattcaaagaaaatgagaaaatgcattagtctatt
tctgaaagggccctttggcagaaatgcatatttcaaggaactaaatagaa
ttttttctaagcatacaaacattggttattttctcaagaatgattattta
aagactgtactgactagtttttgtgttaacttgacacagtctggactttt
tca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_118683014_118683812
seq2: B6Ng01-039N11.b_45_843

seq1  GAATTCAATGAAAATGATAACACACCATACCTAAACTTCTAGAATACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAAAATGATAACACACCATACCTAAACTTCTAGAATACAAG  50

seq1  AAAAAAATACTGAGAAGAAAATTCATAGCACTAAGTGCCCTCATAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATACTGAGAAGAAAATTCATAGCACTAAGTGCCCTCATAAAGAA  100

seq1  ATTGGAGAGATTCTACACTAGCAACTTCAGAGCACACCTGAAAGCCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGAGATTCTACACTAGCAACTTCAGAGCACACCTGAAAGCCCTAG  150

seq1  AACAAAAGAAGCAAATGACCAAGAGAAGTAAACCATAGGAGACTGCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGAAGCAAATGACCAAGAGAAGTAAACCATAGGAGACTGCCAAA  200

seq1  ATCAACCAAATGGAAACAAAGAAAACTATACAAGACTCAACTAATCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCAAATGGAAACAAAGAAAACTATACAAGACTCAACTAATCAAAA  250

seq1  ATATAAGCATGAACTCAGATTCACATCACCATCCTTGATTCACAATCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGCATGAACTCAGATTCACATCACCATCCTTGATTCACAATCCAT  300

seq1  TATTCCAACTTCAAAATACAGACTTAGAACATGAGTATTTAAATGAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAACTTCAAAATACAGACTTAGAACATGAGTATTTAAATGAGATT  350

seq1  GCCCTTCCAAGCTCACACATTTGAATACTTATTCTCCAGTTGGTGGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCCAAGCTCACACATTTGAATACTTATTCTCCAGTTGGTGGTGCT  400

seq1  GTTTGAAGAAGCTTACTTGGTGGTGTTATTCTGGAAGAAGTGTGGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGAAGCTTACTTGGTGGTGTTATTCTGGAAGAAGTGTGGAACTT  450

seq1  GAGACAGACTTTGAGAATTTAAAGACATCATAGAGAGACACAATACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGACTTTGAGAATTTAAAGACATCATAGAGAGACACAATACTGCA  500

seq1  CATCTGTAATTTCATTATACTTAAAGGAAGGTGGGAGACAGAGGCAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTAATTTCATTATACTTAAAGGAAGGTGGGAGACAGAGGCAGGGG  550

seq1  AACTCTTTGTTAACATTAATTTACGGATCTTATCTTTATTTGTTCCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTGTTAACATTAATTTACGGATCTTATCTTTATTTGTTCCCATT  600

seq1  GTTGCTTTCAATTAACTTACAAAAAGATCTATTTAGTTTATGAAGAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTCAATTAACTTACAAAAAGATCTATTTAGTTTATGAAGAACCT  650

seq1  TAAGCCTTGGCTGGACAGTTTCTGAGCTATTCTAACTCCCTTAGACTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTGGCTGGACAGTTTCTGAGCTATTCTAACTCCCTTAGACTGCT  700

seq1  AATATCCAGATACATGTCCTGTCATTTGGCATTTGTGTCTTTTCCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAGATACATGTCCTGTCATTTGGCATTTGTGTCTTTTCCTGGCT  750

seq1  CTTCCTTGTCTCTCCACATTCTCCCTCTCCCTCTCCCTCTCCCTCTCCC  799
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGTCTCTCCACATTCTCCCTCTCCCTCTCCCTCTCCCTCTCCC  799

seq1: chr1_118823997_118824577
seq2: B6Ng01-039N11.g_200_770 (reverse)

seq1  TGAAACTCCTTCCTTTGTG-ATAAGTCCAGACTGTGTCAAGTTAACAC-A  48
                       || | |||||||||||||||||||||||||| |
seq2  -----------------TGAAAAAGTCCAGACTGTGTCAAGTTAACACAA  33

seq1  AAACTAGTCAGTACAGTC-TTAAATAATCATTCTTGAG-AAATAACC-AT  95
      |||||||||||||||||| ||||||||||||||||||| |||||||| ||
seq2  AAACTAGTCAGTACAGTCTTTAAATAATCATTCTTGAGAAAATAACCAAT  83

seq1  GTTTGTATGCTTAG-AAAAATTCTA-TTAGTTCCTTGAAATATGCATTTC  143
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  GTTTGTATGCTTAGAAAAAATTCTATTTAGTTCCTTGAAATATGCATTTC  133

seq1  TGCCAAAGGGCCCTTTCAGAAATAGACTAATGCATTTTCTCATTTTCTTT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGGGCCCTTTCAGAAATAGACTAATGCATTTTCTCATTTTCTTT  183

seq1  GAATTTACATATCACTCAATTACCAAAACTCTCCAAAGACATAATACTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACATATCACTCAATTACCAAAACTCTCCAAAGACATAATACTTA  233

seq1  ATTAATATAAATGTAATTTATTTGTGAATATGTATACTACATGTGTTTTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATAAATGTAATTTATTTGTGAATATGTATACTACATGTGTTTTT  283

seq1  GTATACATATCCATTTGTTAGGGGAGAATGGAGGCCAAATCCTGACATCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATATCCATTTGTTAGGGGAGAATGGAGGCCAAATCCTGACATCC  333

seq1  AATACTAGCCCTTACTCTCCTCTCAGTACCCCCTCATGCAACTCCTACCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAGCCCTTACTCTCCTCTCAGTACCCCCTCATGCAACTCCTACCC  383

seq1  ACATTACCCCACTTTCAGGTGTAAGCATAGCACCCAAGCACATATCAAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACCCCACTTTCAGGTGTAAGCATAGCACCCAAGCACATATCAAGT  433

seq1  CCCTGCAGCACTAGGAACATCCTCTCTCACTGAGGTCAGAAAAGGATGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGCACTAGGAACATCCTCTCTCACTGAGGTCAGAAAAGGATGTT  483

seq1  CATTTAGAGGCACATGATCCACAGGCAGGTAGGCAATAGGCTCAAGGATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGAGGCACATGATCCACAGGCAGGTAGGCAATAGGCTCAAGGATA  533

seq1  GCACCTGCTCCAGTTGTTGGGGGGCCCACATAAAGACC  581
      ||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGCTCCAGTTGTTGGGGGGCCCACATAAAGACC  571