BAC Information

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BAC

Clone NameB6Ng01-039N12
Chromosome1 (Build37)
Map Location 172,676,515 - 172,778,473
singlet/doubletdoublet
Overlap geneAtf6
Upstream geneRgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039N12.bB6Ng01-039N12.g
ACCDH866990DH866991
length1,139701
definitionDH866990|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N12, 5' end.DH866991|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,676,515 - 172,677,676)(172,777,773 - 172,778,473)
sequence
gaattcaaagtgggtacactaatgatgtaagaagaaagcgggaaataagg
gcagctagaggaaatgaaagaggcagggtagggctacaagagagccgctt
tatgaaaacataacatgggaaatccacagcttggaaagaagcacatttga
aacttaaataatgtggtattcttcaggaagagaggggagaaggagaccga
tcagtatgaacaatacagcgcataaattctccttcatcaaacagtagtat
ggctatctcatgagaatctttagagctatgcatgtagagacaagaggaca
actcggataagtaggttctctccttcccaccgcctgctgttctctgccct
ctgacagataaactttctttctacccacagtgtggtctaggtcggtggaa
tctctgtgccctcacttacaactacctcctttcattccagctccagaggg
cccaataccctcttctggcctgtttaaacctctcctaatacatataaatt
ttaaaaataataataaagataaatcttaagaagtgtgataagtagcttaa
aatgagaataatgaaatttaaattaatatttttataaaatagtgagaaac
atttccaaaataatatatgtttgaatttgtctgagtgactgtcttgaatg
ccctctcattaaccaagagaatattggttaagcaaaggactcttgggtta
acaaatcaaaattttaacttaccatttatgtttattgctggtaatacaat
tgacatttttggtcttgtggtcttgttgtgggtggtagctggtaatagca
gatgatcctacaattaaaaaagaacagtgttttaaacatcatgatgactg
gtttactctaggaacactccagatttatgctttttactcaggtcatgaag
attaatttttttaatataaacttggcttagaagaaataaattacaaatta
tcttaatgcatacatatttttcagagtgggctgccactgtcagacacact
gtgcagttttctaatactccgagatttgtacatattttgattagggtcat
gcccctacatagtgtgtgatctgatagactgcatcctcgtcaggatcagt
tcactagaatggtgggagctgagatattatgtacaagac
gaattctaagattactttttgcttttgctgggccatcagcacctgacctt
aggataaaagccattaggatcttacctggtggtctgtctaccaactctcc
aaacctttcttagtagagtcaccttcaaaaacaactcttaaaattacaaa
atgtactatgtcctttgccttaaagccgtttaattacttcctagtgctca
aagtgtggagttcagattctctgtgtgctggtcctccaggtctgccgtgc
ttacaaacactttctagttatttcagccttgctttgtgttgcccttccta
tcctcactccccatttagcttgtgtcctgtgagtttcttctgagaactgt
gcacatggctcatgcagtcctgtgctaggcactttgcagcactggaagta
gggtctctgttgttatagtgttagggggttttgtttttgttttgtttttt
aatgagacagcatctaactgtatagcttcttctcttgctgctgtggcaaa
acccctgaccagtgcaacctaaggagtaacggtctcttttgactcagtct
gtcatggatgggaaggcatggccgcaggagacgaggctgatggtcacatc
gtgaccatggtcagaaagcagacagacaaacgtccctgctttgcctgctt
tctctgtttctgaagcctgacacctcagcccatggagcaaggctgcccac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172676515_172677676
seq2: B6Ng01-039N12.b_46_1184

seq1  GAATTCAAAGTGGGTACACTAATGATGTAAGAAGAAAGCGGGAAATAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTGGGTACACTAATGATGTAAGAAGAAAGCGGGAAATAAGG  50

seq1  GCAGCTAGAGGAAATGAAAGAGGCAGGGTAGGGCTACAAGAGAGCCGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAGAGGAAATGAAAGAGGCAGGGTAGGGCTACAAGAGAGCCGCTT  100

seq1  TATGAAAACATAACATGGGAAATCCACAGCTTGGAAAGAAGCACATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAACATAACATGGGAAATCCACAGCTTGGAAAGAAGCACATTTGA  150

seq1  AACTTAAATAATGTGGTATTCTTCAGGAAGAGAGGGGAGAAGGAGACCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATAATGTGGTATTCTTCAGGAAGAGAGGGGAGAAGGAGACCGA  200

seq1  TCAGTATGAACAATACAGCGCATAAATTCTCCTTCATCAAACAGTAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGAACAATACAGCGCATAAATTCTCCTTCATCAAACAGTAGTAT  250

seq1  GGCTATCTCATGAGAATCTTTAGAGCTATGCATGTAGAGACAAGAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCTCATGAGAATCTTTAGAGCTATGCATGTAGAGACAAGAGGACA  300

seq1  ACTCGGATAAGTAGGTTCTCTCCTTCCCACCGCCTGCTGTTCTCTGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGATAAGTAGGTTCTCTCCTTCCCACCGCCTGCTGTTCTCTGCCCT  350

seq1  CTGACAGATAAACTTTCTTTCTACCCACAGTGTGGTCTAGGTCGGTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGATAAACTTTCTTTCTACCCACAGTGTGGTCTAGGTCGGTGGAA  400

seq1  TCTCTGTGCCCTCACTTACAACTACCTCCTTTCATTCCAGCTCCAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGCCCTCACTTACAACTACCTCCTTTCATTCCAGCTCCAGAGGG  450

seq1  CCCAATACCCTCTTCTGGCCTGTTTAAACCTCTCCTAATACATATAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATACCCTCTTCTGGCCTGTTTAAACCTCTCCTAATACATATAAATT  500

seq1  TTAAAAATAATAATAAAGATAAATCTTAAGAAGTGTGATAAGTAGCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAATAATAAAGATAAATCTTAAGAAGTGTGATAAGTAGCTTAA  550

seq1  AATGAGAATAATGAAATTTAAATTAATATTTTTATAAAATAGTGAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAATAATGAAATTTAAATTAATATTTTTATAAAATAGTGAGAAAC  600

seq1  ATTTCCAAAATAATATATGTTTGAATTTGTCTGAGTGACTGTCTTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAATAATATATGTTTGAATTTGTCTGAGTGACTGTCTTGAATG  650

seq1  CCCTCTCATTAACCAAGAGAATATTGGTTAAGCAAAGGACTCTTGGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCATTAACCAAGAGAATATTGGTTAAGCAAAGGACTCTTGGGTTA  700

seq1  ACAAATCAAAATTTTAACTTACCATTTATGTTTATTGCTGGTAATACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCAAAATTTTAACTTACCATTTATGTTTATTGCTGGTAATACAAT  750

seq1  TGACATTTTTGGTCTTGTGGTCTTGTTGTGGGTGGTAGCTGGTAATAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTTTGGTCTTGTGGTCTTGTTGTGGGTGGTAGCTGGTAATAGCA  800

seq1  GATGATCCTACAATTAAAAAAGAACAGTGTTTTAAACATCATGATGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCCTACAATTAAAAAAGAACAGTGTTTTAAACATCATGATGACTG  850

seq1  GTTTACTCTAGGAACACTCCAGATTTATGCTTTTTACTCAGGTCATGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTCTAGGAACACTCCAGATTTATGCTTTTTACTCAGGTCATGAAG  900

seq1  ATTAATTTTTTTAATATAAACTTGGCTTAGAAGAAATAAATTACAAATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTTTTAATATAAACTTGGCTTAGAAGAAATAAATTACAAATTA  950

seq1  TCTTAATGCAATACATATTTTTCAGAGGTGGGGCTGCCACTGTCAGACAC  1000
      ||||||||| |||||||||||||||||   ||||||||||||||||||||
seq2  TCTTAATGC-ATACATATTTTTCAGAG--TGGGCTGCCACTGTCAGACAC  997

seq1  ACTGTGGCAGTTTTCTAATACTCCGAGATTTTGGTAACAATATATGATTA  1050
      ||||| |||||||||||||||||||||||||  || |||   | ||||||
seq2  ACTGT-GCAGTTTTCTAATACTCCGAGATTT--GT-ACATATTTTGATTA  1043

seq1  GGGTCATGCCCCTACATAGGTGTGTGATCTGGATAAGACTGCATCCTCTG  1100
      |||||||||||||||||| ||||||||||| ||| ||||||||||||| |
seq2  GGGTCATGCCCCTACATA-GTGTGTGATCT-GAT-AGACTGCATCCTC-G  1089

seq1  TCCAGGTATCAGTTTCCAACCCTATAGAATGATGGGAGCTGAGGTATATT  1150
      | |||| |||||||       |  ||||||| |||||||||||  |||||
seq2  T-CAGG-ATCAGTT-------CACTAGAATGGTGGGAGCTGAG--ATATT  1128

seq1  ATGTTACAAGAC  1162
      ||| ||||||||
seq2  ATG-TACAAGAC  1139

seq1: chr1_172777773_172778473
seq2: B6Ng01-039N12.g_69_769 (reverse)

seq1  TGTGGGCAGCCTTGCTCCATGGGCTGAGGTGTCAGGCTTCAGAAACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAGCCTTGCTCCATGGGCTGAGGTGTCAGGCTTCAGAAACAGAG  50

seq1  AAAGCAGGCAAAGCAGGGACGTTTGTCTGTCTGCTTTCTGACCATGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGCAAAGCAGGGACGTTTGTCTGTCTGCTTTCTGACCATGGTCA  100

seq1  CGATGTGACCATCAGCCTCGTCTCCTGCGGCCATGCCTTCCCATCCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTGACCATCAGCCTCGTCTCCTGCGGCCATGCCTTCCCATCCATGA  150

seq1  CAGACTGAGTCAAAAGAGACCGTTACTCCTTAGGTTGCACTGGTCAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAGTCAAAAGAGACCGTTACTCCTTAGGTTGCACTGGTCAGGGG  200

seq1  TTTTGCCACAGCAGCAAGAGAAGAAGCTATACAGTTAGATGCTGTCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCACAGCAGCAAGAGAAGAAGCTATACAGTTAGATGCTGTCTCAT  250

seq1  TAAAAAACAAAACAAAAACAAAACCCCCTAACACTATAACAACAGAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAAAACAAAAACAAAACCCCCTAACACTATAACAACAGAGACC  300

seq1  CTACTTCCAGTGCTGCAAAGTGCCTAGCACAGGACTGCATGAGCCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCAGTGCTGCAAAGTGCCTAGCACAGGACTGCATGAGCCATGTG  350

seq1  CACAGTTCTCAGAAGAAACTCACAGGACACAAGCTAAATGGGGAGTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCTCAGAAGAAACTCACAGGACACAAGCTAAATGGGGAGTGAGG  400

seq1  ATAGGAAGGGCAACACAAAGCAAGGCTGAAATAACTAGAAAGTGTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGGGCAACACAAAGCAAGGCTGAAATAACTAGAAAGTGTTTGTA  450

seq1  AGCACGGCAGACCTGGAGGACCAGCACACAGAGAATCTGAACTCCACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGCAGACCTGGAGGACCAGCACACAGAGAATCTGAACTCCACACT  500

seq1  TTGAGCACTAGGAAGTAATTAAACGGCTTTAAGGCAAAGGACATAGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCACTAGGAAGTAATTAAACGGCTTTAAGGCAAAGGACATAGTACA  550

seq1  TTTTGTAATTTTAAGAGTTGTTTTTGAAGGTGACTCTACTAAGAAAGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATTTTAAGAGTTGTTTTTGAAGGTGACTCTACTAAGAAAGGTT  600

seq1  TGGAGAGTTGGTAGACAGACCACCAGGTAAGATCCTAATGGCTTTTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTGGTAGACAGACCACCAGGTAAGATCCTAATGGCTTTTATCC  650

seq1  TAAGGTCAGGTGCTGATGGCCCAGCAAAAGCAAAAAGTAATCTTAGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAGGTGCTGATGGCCCAGCAAAAGCAAAAAGTAATCTTAGAATT  700

seq1  C  701
      |
seq2  C  701