BAC Information

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BAC

Clone NameB6Ng01-039P11
Chromosome1 (Build37)6 (Build37)
Map Location 33,714,798 - 33,715,897145,596,951 - 145,597,466
singlet/doubletsingletsinglet
Overlap genePrim2
Upstream geneEG633498, LOC213711, LOC100040828, EG666108
Downstream gene1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039P11.bB6Ng01-039P11.g
ACCDH867077DH867078
length1,090609
definitionDH867077|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P11, 5' end.DH867078|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,714,798 - 33,715,897)(145,596,951 - 145,597,466)
sequence
gaattcactgtgtagactaggctggcctcaaactcaaaaatctgatttta
tataatcgttgttttctaggtatttgcaggttggctctgagatcgttgtg
tgtttctgagcacttctgattcatgttactacatgtgtttggattgctga
ctggtatattttacatggctgtatttcttttggcatgcacactaattgtg
gtcaacttcgtttcttttacttaaaatatggggtactatttgcccaatat
atattacatatatttatatatattctccctatataaacctatattaataa
cctgccaaatgagctcagtttgatacctgctgactggagagctctgttcc
tttttttttttttttctttttttgaaagtcaagacaaagttttactttta
agtgattacaagcacacgaaatgacatgtgacaagttgagtcctagcatc
tagtggtttgggttacaagatactaacagcagccggaacaagcagatcgt
attcattgtcctaaattagccagggcagagcactctgaggctggctgctg
ctttacaggtgttaccatgactactgactactcttccatagctgacgccc
ctgacctgtaagaaaggagaaggaacagtttactccctttctttcttcaa
agaattttttctactagactaataaaagaaaagtcaacattgatacccat
tacttgcatgaagacccaggataacaggtgacatatactccttaaagaca
tacaagctaagatgaaacttcaggtacacaataagtctgtacaaaaagct
agatttgatattctcaaaaagtgaagggtcctacaacagcatagggaaat
tatttaatgccctccagaacagaagtcgagctctgtggaggttttggctc
tgtggggcagatcccatgccaacccacagagcagcccttctatcctttta
tgtggtagtttcatgaatttctgggcagatgtcacacacaaggccaagag
ttatccaggactcattcctgttctgctcgagtggtcctgaggagttcatc
tctcctgggtttcttattccacctactgtctacagctgca
gaattctggagactggaatggaggccaggaagcagaatgaaaatcaccta
cctgcaacctatcgcagtgagttccccatagaaagtgtttctgtggacat
agtactaccggaggattcagcaatacctctcctgggcatatatccagaag
atgccccaactggtaagaaggacacatgctccactatgttcatagcagcc
ttatttataatagccagaagctggaaagaacctagatgcccctcaacaga
ggaatggatacagaaaatgtggtacatctacacaatggagtactactcag
ctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctg
gagggcatcatcctgagtgaggtaacgcattcacaaagaaactcacacaa
tatgtactcactgataagtggatattagccccaaacctaggatacccaag
atataagatataatttgctaaacacatgaaactcaagaagaatgaagact
gaagtgtggacactatgcccctccttagatttgggaacaaaacaccaatg
gaaggagttacagagacaaagtttggagctgagatgaaaggatggaccat
gtagagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_33714798_33715897
seq2: B6Ng01-039P11.b_45_1133 (reverse)

seq1  GCAGCTGTAG-CAGTGAGGTGGAAAAGGAGACCCAGGAGAAGATGAACGT  49
      |||||||||| |||| |||||||| | || ||||||||| |||||||| |
seq2  GCAGCTGTAGACAGT-AGGTGGAATAAGAAACCCAGGAG-AGATGAAC-T  47

seq1  CCTCCAGAACCACTTCGAGCAGAACAGGGATGGAGTCCTGGATAACCTCT  99
      ||| ||| ||||| |||||||||||||| || ||||||||||||| ||||
seq2  CCT-CAGGACCAC-TCGAGCAGAACAGGAAT-GAGTCCTGGATAA-CTCT  93

seq1  TGGCCTTTGTGTGTGACATCTGGCCAGAAATTCATGAAAACTACCACATA  149
      ||||| |||||||||||||||| ||||||||||||| |||||||||||||
seq2  TGGCC-TTGTGTGTGACATCTGCCCAGAAATTCATG-AAACTACCACATA  141

seq1  AAAGGATAGAAGGGCCTGCTCTGTGGGTTGGCATGGGATCTGCCCCCACA  199
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  AAAGGATAGAAGGG-CTGCTCTGTGGGTTGGCATGGGATCTG-CCCCACA  189

seq1  GAGCCAAAAACCTCCACAGAGCTCGACTTCTGTTCTGGAGGGCATTAAAT  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCC-AAAACCTCCACAGAGCTCGACTTCTGTTCTGGAGGGCATTAAAT  238

seq1  TATTTCCCTATGCTGTTGTAGGACCCTTCACTTTTTGAGAATATCAAATC  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCTATGCTGTTGTAGGACCCTTCACTTTTTGAGAATATCAAATC  288

seq1  TAGCTTTTTGTACAGACTTATTGTGTACCTGAAGTTTCATCTTAGCTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTTGTACAGACTTATTGTGTACCTGAAGTTTCATCTTAGCTTGT  338

seq1  ATGTCTTTAAGGAGTATATGTCACCTGTTATCCTGGGTCTTCATGCAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTAAGGAGTATATGTCACCTGTTATCCTGGGTCTTCATGCAAGT  388

seq1  AATGGGTATCAATGTTGACTTTTCTTTTATTAGTCTAGTAGAAAAAATTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTATCAATGTTGACTTTTCTTTTATTAGTCTAGTAGAAAAAATTC  438

seq1  TTTGAAGAAAGAAAGGGAGTAAACTGTTCCTTCTCCTTTCTTACAGGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAAAGAAAGGGAGTAAACTGTTCCTTCTCCTTTCTTACAGGTCA  488

seq1  GGGGCGTCAGCTATGGAAGAGTAGTCAGTAGTCATGGTAACACCTGTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTCAGCTATGGAAGAGTAGTCAGTAGTCATGGTAACACCTGTAAA  538

seq1  GCAGCAGCCAGCCTCAGAGTGCTCTGCCCTGGCTAATTTAGGACAATGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCCAGCCTCAGAGTGCTCTGCCCTGGCTAATTTAGGACAATGAA  588

seq1  TACGATCTGCTTGTTCCGGCTGCTGTTAGTATCTTGTAACCCAAACCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATCTGCTTGTTCCGGCTGCTGTTAGTATCTTGTAACCCAAACCACT  638

seq1  AGATGCTAGGACTCAACTTGTCACATGTCATTTCGTGTGCTTGTAATCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTAGGACTCAACTTGTCACATGTCATTTCGTGTGCTTGTAATCAC  688

seq1  TTAAAAGTAAAACTTTGTCTTGACTTTCAAAAAAAGAAAAAAAAAAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTAAAACTTTGTCTTGACTTTCAAAAAAAGAAAAAAAAAAAAAA  738

seq1  AGGAACAGAGCTCTCCAGTCAGCAGGTATCAAACTGAGCTCATTTGGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGAGCTCTCCAGTCAGCAGGTATCAAACTGAGCTCATTTGGCAG  788

seq1  GTTATTAATATAGGTTTATATAGGGAGAATATATATAAATATATGTAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAATATAGGTTTATATAGGGAGAATATATATAAATATATGTAATA  838

seq1  TATATTGGGCAAATAGTACCCCATATTTTAAGTAAAAGAAACGAAGTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGGCAAATAGTACCCCATATTTTAAGTAAAAGAAACGAAGTTGA  888

seq1  CCACAATTAGTGTGCATGCCAAAAGAAATACAGCCATGTAAAATATACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTAGTGTGCATGCCAAAAGAAATACAGCCATGTAAAATATACCA  938

seq1  GTCAGCAATCCAAACACATGTAGTAACATGAATCAGAAGTGCTCAGAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAATCCAAACACATGTAGTAACATGAATCAGAAGTGCTCAGAAAC  988

seq1  ACACAACGATCTCAGAGCCAACCTGCAAATACCTAGAAAACAACGATTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACGATCTCAGAGCCAACCTGCAAATACCTAGAAAACAACGATTAT  1038

seq1  ATAAAATCAGATTTTTGAGTTTGAGGCCAGCCTAGTCTACACAGTGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCAGATTTTTGAGTTTGAGGCCAGCCTAGTCTACACAGTGAATT  1088

seq1  C  1100
      |
seq2  C  1089

seq1: chr6_145596951_145597466
seq2: B6Ng01-039P11.g_163_678

seq1  TGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATAT  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGACATAGTACTACCGGAGGATTCAGCAATACCTCTCCTGGGCATATAT  50

seq1  CCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT  100

seq1  AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCT  150

seq1  CAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTAC  200

seq1  TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT  250

seq1  GGACCTGGAGGGCATCATCCTGAGTGAGGTAATACATTCACAAAGAAACT  300
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GGACCTGGAGGGCATCATCCTGAGTGAGGTAACGCATTCACAAAGAAACT  300

seq1  CACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGAT  350

seq1  ACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAAGAAT  400

seq1  GAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAAAC  450

seq1  ACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGAT  500
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGAT  500

seq1  GGACCATGTAGGGACT  516
      ||||||||||| ||||
seq2  GGACCATGTAGAGACT  516