BAC Information

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BAC

Clone NameB6Ng01-039P18
Chromosome1 (Build37)
Map Location 89,798,791 - 89,903,521
singlet/doubletdoublet
Overlap geneUsp40
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Downstream geneLOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039P18.bB6Ng01-039P18.g
ACCDH867091DH867092
length1,1521,164
definitionDH867091|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P18, 5' end.DH867092|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,798,791 - 89,799,945)(89,902,348 - 89,903,521)
sequence
gaattcaggcagctacacaatagaatggcatccaagaggctttctgaaaa
tggttgtctgctctgaccacaggagacccttcccattttatcagctagag
caggctactggtgtagttgccacctggcctcttacattttatgttcctaa
gctttgagtatgaactgtggttgtgttgttatctctgtggtacatctctg
tttccatgctgaaacataaaaggccttgaaaactcactatgcttcccaga
ctaagacatgtgggtatcattgaaggaagctcttgggatagtcttcccct
tcctagtctcatttctgttttgccagtggtctgacttggtgtttttcatg
ctctgcttgctgttctctatctctacttacatatgtaggtagagcactag
gtagtgctgcctagctggttcaaggattgaatcagcagtattctacttat
atagctctgtttttccaagattgattacggtgcatgcattgacctgtaaa
tagcttgggtaaagaccacagagctggttttcatagcttctgtaatgctc
caggatatatggaaagctccaacgcactgacagagtaggtttccctagat
tttactactatgaactacagtgccatggacgtgcttatctttatgttcct
ggcacaaaggtagacgtctctagcatgtgtttctcaggatagaattagca
ggtctgcatatcttcagctagaccaaacactgtcacattgctcacaaagg
tgagatgcacgtgctacctagcaataggatctgctcctagacatgtacga
ataccatgtacattaatataggtatagatggcatggactgttcctgagct
gccaacttgtagaatgtgttgccactgtgaatactgtaggcatttgtcac
ataatggtgaaaatttgtttatctggccaggaaagtacagtaaaataaca
ggtagcgagggctcttcgacagctccatttgtacaaagtgtctgccactg
atgtaagtagcatgtggtgcatggctgtcacacagcacggttagtggttg
ctgatacgtagtctaatcataatgaaccacactgatggtggagatgatga
ctcttggaatgaacagacattggttgcaacttgaagtggacttctgatct
at
gaattctctcatctttctccagagtaacggtcacttaagacagggttaca
catgcagcttgacttctgcagtgggaaaagttgtcacattatttatacac
atccatagttacatatctgcatttctgagattcagagaactctgattctg
agctgatctgtactgaatttgtttggcctcagaagctaacctggctgagg
cttcttgggagttttagttctctcaggagtatgaacactaatatattcac
aacaggaatgttaatctgtttagttagcattgtctgccccagaccttgat
aggaatgaaaaatagtgtacagacacctccttcatcactcaaaaacctgg
aaattatgaatttcaaagacccaaaggaattgaagtaaggagctttgtaa
aggaaacagaaacaaaaacctacacagattagctgtattagacggctgtg
gtgagttaccgagatgacagactatttctccagaaaccacatgctggaag
ccaggcagtcttcaccaaagcctttatttcttgcctatttctcaacatgt
ttgtcccattcccatctctacactccagcttccttcattggcatctctgt
gtcctttgattccagcatgagccttgtttgacctgtgcatgatccggatt
ggggggggggcggtgtccaaatattcatgaatatgtagctcatgtctatt
ctgacgacagtctggtttggcttgtacttaaatgccgagttctcactacc
acaccgttttatcagatctctggaatgttctgtttctctgagctagactt
attttttctagcgattttaggacatatttactgttgtccacatctagtgt
gccattctaatgcagtgaactgacagatttcagagtggtatctttgtgtc
cttgacctcagcctctatataaagttgcctcctgatagtaattctactct
tcagatttttcagcattactaagcagtaatgaagaatgatatagaccttc
caggttttattagggtgaagttaaaggcaacttaaagtaaaggcacttaa
gtaaaaaaaaataaaagaaaaaaagataaaaattgccttaagtaacgaaa
cttggaggctgtaggaggtgagcaagaagggttccagttctaacactagt
gaactaaccctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89798791_89799945
seq2: B6Ng01-039P18.b_47_1198

seq1  GAATTCAGGCAGCTACACAATAGAATGGCATCCAAGAGGCTTTCTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAGCTACACAATAGAATGGCATCCAAGAGGCTTTCTGAAAA  50

seq1  TGGTTGTCTGCTCTGACCACAGGAGACCCTTCCCATTTTATCAGCTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTCTGCTCTGACCACAGGAGACCCTTCCCATTTTATCAGCTAGAG  100

seq1  CAGGCTACTGGTGTAGTTGCCACCTGGCCTCTTACATTTTATGTTCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACTGGTGTAGTTGCCACCTGGCCTCTTACATTTTATGTTCCTAA  150

seq1  GCTTTGAGTATGAACTGTGGTTGTGTTGTTATCTCTGTGGTACATCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGTATGAACTGTGGTTGTGTTGTTATCTCTGTGGTACATCTCTG  200

seq1  TTTCCATGCTGAAACATAAAAGGCCTTGAAAACTCACTATGCTTCCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGCTGAAACATAAAAGGCCTTGAAAACTCACTATGCTTCCCAGA  250

seq1  CTAAGACATGTGGGTATCATTGAAGGAAGCTCTTGGGATAGTCTTCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACATGTGGGTATCATTGAAGGAAGCTCTTGGGATAGTCTTCCCCT  300

seq1  TCCTAGTCTCATTTCTGTTTTGCCAGTGGTCTGACTTGGTGTTTTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTCTCATTTCTGTTTTGCCAGTGGTCTGACTTGGTGTTTTTCATG  350

seq1  CTCTGCTTGCTGTTCTCTATCTCTACTTACATATGTAGGTAGAGCACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTGCTGTTCTCTATCTCTACTTACATATGTAGGTAGAGCACTAG  400

seq1  GTAGTGCTGCCTAGCTGGTTCAAGGATTGAATCAGCAGTATTCTACTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCTGCCTAGCTGGTTCAAGGATTGAATCAGCAGTATTCTACTTAT  450

seq1  ATAGCTCTGTTTTTCCAAGATTGATTACGGTGCATGCATTGACCTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTGTTTTTCCAAGATTGATTACGGTGCATGCATTGACCTGTAAA  500

seq1  TAGCTTGGGTAAAGACCACAGAGCTGGTTTTCATAGCTTCTGTAATGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGGGTAAAGACCACAGAGCTGGTTTTCATAGCTTCTGTAATGCTC  550

seq1  CAGGATATATGGAAAGCTCCAACGCACTGACAGAGTAGGTTTCCCTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATATGGAAAGCTCCAACGCACTGACAGAGTAGGTTTCCCTAGAT  600

seq1  TTTACTACTATGAACTACAGTGCCATGGACGTGCTTATCTTTATGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTACTATGAACTACAGTGCCATGGACGTGCTTATCTTTATGTTCCT  650

seq1  GGCACAAAGGTAGACGTCTCTAGCATGTGTTTCTCAGGATAGAATTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAAGGTAGACGTCTCTAGCATGTGTTTCTCAGGATAGAATTAGCA  700

seq1  GGTCTGCATATCTTCAGCTAGACCAAACACTGTCACATTGCTCACAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCATATCTTCAGCTAGACCAAACACTGTCACATTGCTCACAAAGG  750

seq1  TGAGATGCACGTGCTACCTAGCAATAGGATCTGCTCCTAGACATGTACGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCACGTGCTACCTAGCAATAGGATCTGCTCCTAGACATGTACGA  800

seq1  ATACCATGTACATTAATATAGGTATAGATGGCATGGACTGTTCCTGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATGTACATTAATATAGGTATAGATGGCATGGACTGTTCCTGAGCT  850

seq1  GCCAACTTGTAGAATGTGTTGCCACTGTGAATACTGTAGGCATTTGTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTTGTAGAATGTGTTGCCACTGTGAATACTGTAGGCATTTGTCAC  900

seq1  ATAATGGTGAAAATTTGTTTATCTGGCCAGGAAAGTAACAGTAAAAATAA  950
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  ATAATGGTGAAAATTTGTTTATCTGGCCAGGAAAGT-ACAGT-AAAATAA  948

seq1  CAGGTAGCGAGGGCTCTTCGACAGCTCCATTTGTACAAAGTGTCTGCCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCGAGGGCTCTTCGACAGCTCCATTTGTACAAAGTGTCTGCCAC  998

seq1  TGATGTAAGTAGCATGTGGTGCATGGCTGTCACACAGCACGGTTAGTGG-  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGATGTAAGTAGCATGTGGTGCATGGCTGTCACACAGCACGGTTAGTGGT  1048

seq1  TGCTGATACGTAGTCTCATTCATAATGAACCACACTGATGGT-GAGATGA  1098
      |||||||||||||||| | ||||||||||||||||||||||| |||||||
seq2  TGCTGATACGTAGTCT-AATCATAATGAACCACACTGATGGTGGAGATGA  1097

seq1  TGACTTCTTGGATATGAACAGACATTGGTTGCAAC-TGAAGTGGACCTAC  1147
      |||| ||||||| |||||||||||||||||||||| ||||||||| || |
seq2  TGAC-TCTTGGA-ATGAACAGACATTGGTTGCAACTTGAAGTGGA-CTTC  1144

seq1  TGATCTAT  1155
      ||||||||
seq2  TGATCTAT  1152

seq1: chr1_89902348_89903521
seq2: B6Ng01-039P18.g_67_1230 (reverse)

seq1  GAGAGGGTTAGTCTCATGTGGTTTTGAACTTGGGACCCTTCTCTTGCTCC  50
      |||||||||||| |||   |  || |||| ||| |||||  ||||||| |
seq2  GAGAGGGTTAGT-TCACTAGTGTTAGAAC-TGGAACCCT--TCTTGCT-C  45

seq1  ACCTCCTACATGCTCTCAAGTCT-GTT-CTTAAGGCTATTTTTTTTCTTT  98
      ||||||||||  ||| ||||| | ||| |||||||| | ||||| |||||
seq2  ACCTCCTACAGCCTC-CAAGTTTCGTTACTTAAGGC-AATTTTTATCTTT  93

seq1  TTTTTTCTTTTTTTTTTTTTTTTTACTTTAAGTTGCCTTTACTTTAAGTT  148
      ||     || |||| ||||||||||| ||||| |||||||||||||||||
seq2  TT-----TTCTTTTATTTTTTTTTAC-TTAAG-TGCCTTTACTTTAAGTT  136

seq1  GCCTTTTAACTTCAACCCTATTAAAACCTGGAAGGTCTATATCCTTCTTC  198
      ||| ||||||||| |||||| |||||||||||||||||||||| ||||||
seq2  GCC-TTTAACTTC-ACCCTAATAAAACCTGGAAGGTCTATATCATTCTTC  184

seq1  ATTACTGCTTAGTAATGCTGAAAATTCTGAAGAGTAGAATTACTATCAGG  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTACTGCTTAGTAATGCTGAAAAATCTGAAGAGTAGAATTACTATCAGG  234

seq1  AGGCAACTTTATATAGAGGCTGAGGTCAAGGACAC-AAGATACCACTCTG  297
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGCAACTTTATATAGAGGCTGAGGTCAAGGACACAAAGATACCACTCTG  284

seq1  AAATCTGTCAGTTCACTGCATTAGAATGGCACACTAGATGTGGACAACAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTCAGTTCACTGCATTAGAATGGCACACTAGATGTGGACAACAG  334

seq1  TAAATATGTCCT-AAATCGCTAG-AAAAATAAGTCTAGCTCAGAGAAACA  395
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  TAAATATGTCCTAAAATCGCTAGAAAAAATAAGTCTAGCTCAGAGAAACA  384

seq1  GAACATTCCAGAGATCTGAT-AAACGGTGTGGTAGTGAGAACTCGGCATT  444
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAACATTCCAGAGATCTGATAAAACGGTGTGGTAGTGAGAACTCGGCATT  434

seq1  TAAGTACAAGCCAAACCAGACTGTCGTCAGAATAGACATGAGCTACATAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACAAGCCAAACCAGACTGTCGTCAGAATAGACATGAGCTACATAT  484

seq1  TCATGAATATTTGGACACCGCCCCCCCCCCAATCCGGATCATGCACAGGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATATTTGGACACCGCCCCCCCCCCAATCCGGATCATGCACAGGT  534

seq1  CAAACAAGGCTCATGCTGGAATCAAAGGACACAGAGATGCCAATGAAGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGGCTCATGCTGGAATCAAAGGACACAGAGATGCCAATGAAGGA  584

seq1  AGCTGGAGTGTAGAGATGGGAATGGGACAAACATGTTGAGAAATAGGCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGTGTAGAGATGGGAATGGGACAAACATGTTGAGAAATAGGCAA  634

seq1  GAAATAAAGGCTTTGGTGAAGACTGCCTGGCTTCCAGCATGTGGTTTCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGGCTTTGGTGAAGACTGCCTGGCTTCCAGCATGTGGTTTCTG  684

seq1  GAGAAATAGTCTGTCATCTCGGTAACTCACCACAGCCGTCTAATACAGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAGTCTGTCATCTCGGTAACTCACCACAGCCGTCTAATACAGCT  734

seq1  AATCTGTGTAGGTTTTTGTTTCTGTTTCCTTTACAAAGCTCCTTACTTCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGTAGGTTTTTGTTTCTGTTTCCTTTACAAAGCTCCTTACTTCA  784

seq1  ATTCCTTTGGGTCTTTGAAATTCATAATTTCCAGGTTTTTGAGTGATGAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTGGGTCTTTGAAATTCATAATTTCCAGGTTTTTGAGTGATGAA  834

seq1  GGAGGTGTCTGTACACTATTTTTCATTCCTATCAAGGTCTGGGGCAGACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTCTGTACACTATTTTTCATTCCTATCAAGGTCTGGGGCAGACA  884

seq1  ATGCTAACTAAACAGATTAACATTCCTGTTGTGAATATATTAGTGTTCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACTAAACAGATTAACATTCCTGTTGTGAATATATTAGTGTTCAT  934

seq1  ACTCCTGAGAGAACTAAAACTCCCAAGAAGCCTCAGCCAGGTTAGCTTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGAGAGAACTAAAACTCCCAAGAAGCCTCAGCCAGGTTAGCTTCT  984

seq1  GAGGCCAAACAAATTCAGTACAGATCAGCTCAGAATCAGAGTTCTCTGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAAACAAATTCAGTACAGATCAGCTCAGAATCAGAGTTCTCTGAA  1034

seq1  TCTCAGAAATGCAGATATGTAACTATGGATGTGTATAAATAATGTGACAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAATGCAGATATGTAACTATGGATGTGTATAAATAATGTGACAA  1084

seq1  CTTTTCCCACTGCAGAAGTCAAGCTGCATGTGTAACCCTGTCTTAAGTGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCACTGCAGAAGTCAAGCTGCATGTGTAACCCTGTCTTAAGTGA  1134

seq1  CCGTTACTCTGGAGAAAGATGAGAGAATTC  1174
      ||||||||||||||||||||||||||||||
seq2  CCGTTACTCTGGAGAAAGATGAGAGAATTC  1164