BAC Information

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BAC

Clone NameB6Ng01-041J01
Chromosome1 (Build37)
Map Location 72,234,121 - 72,353,989
singlet/doubletdoublet
Overlap geneMreg, Pecr, Tmem169
Upstream geneAbca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255
Downstream geneXrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041J01.bB6Ng01-041J01.g
ACCDH868190DH868191
length1,050614
definitionDH868190|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J01, 5' end.DH868191|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,352,951 - 72,353,989)(72,234,121 - 72,234,734)
sequence
gaattctctccctgcctccttaggcaaggctttgttctctgagccgctaa
aagccagtcagtactgggctggagaaatggctctgccgtctaagacattt
gtcatcaagcctgacgagcccattcaagctccaggcacccatattgtgga
gaaaaagaaccaattccacaagttgccctctgatctccacgtgtcccaca
catcacaataagtaaataaataaatttaaaataacaagtttaatagtaaa
aaagtaaatagggggttaaagggaaagggtcccaggttaggaatgtgtac
tgttttcgcaagggtatttcaaagcccagcacctacatcagccttccgcg
gatctgacgccctcttctggcctccactcaatgcacatacccacatgcag
ccgcgtgcatacatgatttttaaaactaaaaaaaaaataataattgctat
tactcaattgataataatccctttcgctagcaatttgtattggcactctg
gagttaaaagtcccctgtgtaagatgaatccacgaagtcacttaactcct
ctaaaggccttctaaatatgatactaaaaaaaaaaaaaccatgaacacga
tgaccttagatcaacgtccaaagagaagagtgagagttcaccgagttaaa
agaaaaagatggctcacaaccatctgtaaatgggatctgatgccctcttc
tggtgtgtctgaagacagctacagtgtactcacatatattaaataaataa
ataaatctttaaaaaggaaagaaaaagtaggaaaaggcattcaactctac
agacaaagtgggttaaaacaccttagcctctgggaagaatttccctacta
ccctggcgtgtctgtggctggggaaagatgcccttttctagagatgggag
ctgtcaattcccgtgagtgttcaccactcaattgcaaggaaattgccctg
gcagttcttcccttctgatataccctatgcacagaaaactggcctgtttt
ctttacaaaaatgactcactagcctgcaggtggttggacaaaattccaga

gaattctcttaatcgaaagtgtcaaatctgaactggggacatggcacagt
ggccaaacagctgcctagcaagttcaagatcctggacttattcccagccc
tgcagaattaagtacccagtcctcagagagctgttggcggggcttggcaa
atgtcgagcagcatcggtcaccatggaaaaccataatgctgagacacact
tcctgaaatgtggccgccggcctcccaccaagcatggcacttctttcact
cgtgaaaatgcctttcctctgctggcttcaacacgtttctgctcatgctc
tctgaaacccgatctaagtctgaatttaggcactggtggtgtccgttcct
cccaagtattacgtcttgggactcttaaagcccagattcaaatcctggct
ttaaacgtaacaggtatgtgctcttgagtaagttgcttaaaatggaagca
ataactgtgcttacttaccgagttgttaccagggcatcctaacattggcg
cgcacacacaaacacacaaaagaggagcctagcgctaagcactgctttca
gtattatgttcaagaaaatcagtatcgttactattgcttttacaaatgaa
tgaatcgggtgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72352951_72353989
seq2: B6Ng01-041J01.b_42_1091 (reverse)

seq1  TCTGGACCTTTTGTCCAACCACCTGCA-GCTTGTGAGTCATTTTTGTATA  49
      ||||||  ||||||||||||||||||| ||| |||||||||||||||| |
seq2  TCTGGA-ATTTTGTCCAACCACCTGCAGGCTAGTGAGTCATTTTTGTAAA  49

seq1  GAAAACAGG-CAG-TTTCTGTGCA-AGGGT-TATCAGAAGGGAAGAACTG  95
      ||||||||| ||| |||||||||| ||||| |||||||||||||||||||
seq2  GAAAACAGGCCAGTTTTCTGTGCATAGGGTATATCAGAAGGGAAGAACTG  99

seq1  -CAGGGCAATTTCCTTGCAAATGAGTGGTGAACACTCACGGGAATTGACA  144
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGGGCAATTTCCTTGCAATTGAGTGGTGAACACTCACGGGAATTGACA  149

seq1  GCCTCCATCTCTAGAAAAGGGCATCTTT-CCCAGCCACAGACACGCCAGG  193
      ||  |||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTCCCATCTCTAGAAAAGGGCATCTTTCCCCAGCCACAGACACGCCAGG  199

seq1  GTAGTA-GGAAATTCTTCCCAGAGGCTAAGGTGTTTTAA-CCACTTTGTC  241
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  GTAGTAGGGAAATTCTTCCCAGAGGCTAAGGTGTTTTAACCCACTTTGTC  249

seq1  TGTAGAGTTGAATGCC-TTTCCTACTTTTTC-TTCCTTTTTAAAGATTTA  289
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TGTAGAGTTGAATGCCTTTTCCTACTTTTTCTTTCCTTTTTAAAGATTTA  299

seq1  TTTATTTATTTAATATATGTGAGTACACTGTAGCTGTCTTCAGACACACC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTAATATATGTGAGTACACTGTAGCTGTCTTCAGACACACC  349

seq1  AGAAGAGGGCATCAGATCCCA-TTACAGATGGTTGTGAGCCATCTTTTTC  388
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAGAGGGCATCAGATCCCATTTACAGATGGTTGTGAGCCATCTTTTTC  399

seq1  TTTTAACTCGGTGAACTCTCACTCTTCTCTTTGGACGTTGATCTAAGGTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTCGGTGAACTCTCACTCTTCTCTTTGGACGTTGATCTAAGGTC  449

seq1  ATCGTGTTCATGGTTTTTTTTTTTTTAGTATCATATTTAGAAGGCCTTTA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTTCATGGTTTTTTTTTTTTTAGTATCATATTTAGAAGGCCTTTA  499

seq1  GAGGAGTTAAGTGACTTCGTGGATTCATCTTACACAGGGGACTTTTAACT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTAAGTGACTTCGTGGATTCATCTTACACAGGGGACTTTTAACT  549

seq1  CCAGAGTGCCAATACAAATTGCTAGCGAAAGGGATTATTATCAATTGAGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGCCAATACAAATTGCTAGCGAAAGGGATTATTATCAATTGAGT  599

seq1  AATAGCAATTATTATTTTTTTTTTAGTTTTAAAAATCATGTATGCACGCG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAATTATTATTTTTTTTTTAGTTTTAAAAATCATGTATGCACGCG  649

seq1  GCTGCATGTGGGTATGTGCATTGAGTGGAGGCCAGAAGAGGGCGTCAGAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATGTGGGTATGTGCATTGAGTGGAGGCCAGAAGAGGGCGTCAGAT  699

seq1  CCGCGGAAGGCTGATGTAGGTGCTGGGCTTTGAAATACCCTTGCGAAAAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGAAGGCTGATGTAGGTGCTGGGCTTTGAAATACCCTTGCGAAAAC  749

seq1  AGTACACATTCCTAACCTGGGACCCTTTCCCTTTAACCCCCTATTTACTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACATTCCTAACCTGGGACCCTTTCCCTTTAACCCCCTATTTACTT  799

seq1  TTTTACTATTAAACTTGTTATTTTAAATTTATTTATTTACTTATTGTGAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTATTAAACTTGTTATTTTAAATTTATTTATTTACTTATTGTGAT  849

seq1  GTGTGGGACACGTGGAGATCAGAGGGCAACTTGTGGAATTGGTTCTTTTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGACACGTGGAGATCAGAGGGCAACTTGTGGAATTGGTTCTTTTT  899

seq1  CTCCACAATATGGGTGCCTGGAGCTTGAATGGGCTCGTCAGGCTTGATGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAATATGGGTGCCTGGAGCTTGAATGGGCTCGTCAGGCTTGATGA  949

seq1  CAAATGTCTTAGACGGCAGAGCCATTTCTCCAGCCCAGTACTGACTGGCT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCTTAGACGGCAGAGCCATTTCTCCAGCCCAGTACTGACTGGCT  999

seq1  TTTAGCGGCTCAGAGAACAAAGCCTTGCCTAAGGAGGCAGGGAGAGAATT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCGGCTCAGAGAACAAAGCCTTGCCTAAGGAGGCAGGGAGAGAATT  1049

seq1  C  1039
      |
seq2  C  1050

seq1: chr1_72234121_72234734
seq2: B6Ng01-041J01.g_69_682

seq1  GAATTCTCTTAATCGAAAGTGTCAAATCTGAACTGGGGACATGGCACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAATCGAAAGTGTCAAATCTGAACTGGGGACATGGCACAGT  50

seq1  GGCCAAACAGCTGCCTAGCAAGTTCAAGATCCTGGACTTATTCCCAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAACAGCTGCCTAGCAAGTTCAAGATCCTGGACTTATTCCCAGCCC  100

seq1  TGCAGAATTAAGTACCCAGTCCTCAGAGAGCTGTTGGCGGGGCTTGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATTAAGTACCCAGTCCTCAGAGAGCTGTTGGCGGGGCTTGGCAA  150

seq1  ATGTCGAGCAGCATCGGTCACCATGGAAAACCATAATGCTGAGACACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGAGCAGCATCGGTCACCATGGAAAACCATAATGCTGAGACACACT  200

seq1  TCCTGAAATGTGGCCGCCGGCCTCCCACCAAGCATGGCACTTCTTTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAATGTGGCCGCCGGCCTCCCACCAAGCATGGCACTTCTTTCACT  250

seq1  CGTGAAAATGCCTTTCCTCTGCTGGCTTCAACACGTTTCTGCTCATGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAAATGCCTTTCCTCTGCTGGCTTCAACACGTTTCTGCTCATGCTC  300

seq1  TCTGAAACCCGATCTAAGTCTGAATTTAGGCACTGGTGGTGTCCGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACCCGATCTAAGTCTGAATTTAGGCACTGGTGGTGTCCGTTCCT  350

seq1  CCCAAGTATTACGTCTTGGGACTCTTAAAGCCCAGATTCAAATCCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTATTACGTCTTGGGACTCTTAAAGCCCAGATTCAAATCCTGGCT  400

seq1  TTAAACGTAACAGGTATGTGCTCTTGAGTAAGTTGCTTAAAATGGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACGTAACAGGTATGTGCTCTTGAGTAAGTTGCTTAAAATGGAAGCA  450

seq1  ATAACTGTGCTTACTTACCGAGTTGTTACCAGGGCATCCTAACATTGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTGCTTACTTACCGAGTTGTTACCAGGGCATCCTAACATTGGCG  500

seq1  CGCACACACAAACACACAAAAGAGGAGCCTAGCGCTAAGCACTGCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACACAAACACACAAAAGAGGAGCCTAGCGCTAAGCACTGCTTTCA  550

seq1  GTATTATGTTCAAGAAAATCAGTATCGTTACTATTGCTTTTACAAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGTTCAAGAAAATCAGTATCGTTACTATTGCTTTTACAAATGAA  600

seq1  TGAATCGGGTGCAT  614
      ||||||||||||||
seq2  TGAATCGGGTGCAT  614