BAC Information

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BAC

Clone NameB6Ng01-043A17
Chromosome1 (Build37)
Map Location 100,246,309 - 100,247,515
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
Downstream geneSlco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043A17.bB6Ng01-043A17.g
ACCDH869228DH869229
length1,2011,124
definitionDH869228|Mus musculus domesticus DNA, BAC clone: B6Ng01-043A17, 5' end.DH869229|Mus musculus domesticus DNA, BAC clone: B6Ng01-043A17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccataggtcaggaaagtttacactgaatcaaccaaagcatagcta
ataaggaagtagatttgtttttcatccacaggacgagtcctcgattccac
aggtgggtctgatttcttttttgtgactatagtataaataatagcctcaa
ataccaggaaattgctttgcataactgcctaagacaaaactggatccctg
gttttgcatattttctcaaccattctcaatgcaaacataatttggattga
aaattttgttactaaataattgaatctagagagacccattccaaaatgtt
cattggtgtcttaaatatgtacttttttttcttttgcttagtgattatat
cagccagtttatttgaaatcatgacgccattgaagatactaacaatggaa
gaaggaaataaaattctagaaataccttctaggtattaatgcgatgattt
tgtaccaccagatggcggtatttagttttgaaaccatattcgccatacca
cagccaagtatttaaagcagttcaatatgaatgaataaccttgtcttaga
caaaagaaccatcaccagaagagtctaatgtcttttctttgttctagtat
catccatctgtgcaagctgtcccttcctttgaaatacacgaaaaattaac
tatgtacaaaacccacactggagctacaagacagaatgggactacaagtg
cctgtatttggcaacagatggtttgaaactgaatacaataatcaataatg
atgatgccttgactacatgagcagctgtcctccccacagctcaagagcct
ctcatcatccctctcctgccccaacagacagttatatcacctagagaatg
ttcctttgtctctttcctttctttcctttacttttgatttgcttctcatc
tccagataataatcaaccttcctgacacaagagagcaacacttttgcttg
ttctcacacctatacaaatactctgcaaactgtttaagcctctcatacca
tagcacataaacttgatgatggaataggtagactgaaggatcattgaaaa
actgttcagaaattttgtcttcagaatacttaatctgtgtatgctagaac
agatgagctccttttatataggctttgactgaacgaaaggtgtttggaat
atataaagaatacttggaattttcctctcaactgataactatttcttact
c
gaattcaaatagatctgtacttatcacccaacacaaaattcaactccaaa
tggatcgaagacttcaacataggccaggtatagtgaatctgatagaaaca
aaagtgaagaatggtcttgatctcattgtctcagaaaagaatttctgaac
tgagtacttagagtgcagacactaagactaaaaacaaccatttataaatg
ggacctcataaaatgaaagagtttttgtaagaattagtgaaggtctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttcttccttccttccttccttccttccttccttccttccttctc
ctccccttctttattcttctacttctccctcctctgtctcctcctcccct
cttcctcctcctcctccttcttctttcttcttctacttttcctcctcctc
tttataccaaacttggacatcaagaaaaaaaatgaccaattaaaaatggt
gtatatctaaatagagaattcgcaaaagaagaaacacaaatggccaagaa
acacttaaagaaatgttcaacatccctagtcatcaggtaaatgtaaatca
aaaccattttgagattccatcttattccagccagaactgtcaaaatcaac
tcaagaaataacagctcatcctgcagaggatgtggtgtaagggaaacatc
catccattgatggtgtgagcacaagtttgtataacccctataaaaatcag
tttttcagttcctcagaagctgaaatggatttaccccaagattcagctat
atacccttgagcgtatacccagagacatgtgctcaaccatgttctttctg
tctattcatactagccagagatgaaacagcatagatgtgctcacagagaa
aaaagtagtgctatacatttgcacatgagatgatcagatctaagacaata
cagtatgtttcattgattgtgtagctgtaagtctcataacagcttaagtc
attacagatgctagattggtatgactgatgaagtgtcactagaggaatca
taccttaatcaagtaggctgatgagtcatgagtagagaatgtagactcgc
tatctagcatatgtggactgacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100246309_100247515
seq2: B6Ng01-043A17.b_43_1243 (reverse)

seq1  GAGTAAGAAATTAGTAATCAGTTGAGAGAAAAATT-CAAGTATTCTTTA-  48
      |||||||||| |||| |||||||||||| |||||| ||||||||||||| 
seq2  GAGTAAGAAA-TAGTTATCAGTTGAGAGGAAAATTCCAAGTATTCTTTAT  49

seq1  ATAAT-CAAACACCTTTCCTTCTAAGTCAAAGCTTATATAAA--GAGCTC  95
      ||| | |||||||||||| |||  ||||||||| ||||||||  ||||||
seq2  ATATTCCAAACACCTTTCGTTC--AGTCAAAGCCTATATAAAAGGAGCTC  97

seq1  ATCCTGTTCTAAGGCCATACACAGA-TAAGTATTCTTGAGACAAAATTTC  144
      || ||||||||    |||||||||| ||||||||||  ||||||||||||
seq2  AT-CTGTTCTA---GCATACACAGATTAAGTATTCTGAAGACAAAATTTC  143

seq1  TTGAACAGGTATTTCAATGAT-CTTCAGTCTACCTATTCCATCATCAAGT  193
       |||||| || |||||||||| ||||||||||||||||||||||||||||
seq2  -TGAACA-GTTTTTCAATGATCCTTCAGTCTACCTATTCCATCATCAAGT  191

seq1  TTATGTGCTTATGGTATGAGAGGCTTAAAACAGTTTGCAGAGTATTTGTA  243
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TTATGTGC-TATGGTATGAGAGGCTT-AAACAGTTTGCAGAGTATTTGTA  239

seq1  TAGGTGTGAGAACAAGCAAAAGTGTTGCTCTCTTGTGTCAGGAAGGTTGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGAGAACAAGCAAAAGTGTTGCTCTCTTGTGTCAGGAAGGTTGA  289

seq1  TTATTATCTGGAGATGAGAAGCAAAATCAAAAGTAAAGGAAAAGAAAGGA  343
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  TTATTATCTGGAGATGAGAAGC-AAATCAAAAGTAAAGG-AAAGAAAGGA  337

seq1  AAGAGACAAAGGAACATTCTCTAGGTGATATAACTGTCTGTTGGGGCAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAAAGGAACATTCTCTAGGTGATATAACTGTCTGTTGGGGCAGG  387

seq1  AGAGGGATGATGAGAGGCTCTTGAGCTGTGGGGAGGACAGCTGCTCATGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATGATGAGAGGCTCTTGAGCTGTGGGGAGGACAGCTGCTCATGT  437

seq1  AGTCAAGGCATCATCATTATTGATTATTGTATTCAGTTTCAAACCATCTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGCATCATCATTATTGATTATTGTATTCAGTTTCAAACCATCTG  487

seq1  TTGCCAAATACAGGCACTTGTAGTCCCATTCTGTCTTGTAGCTCCAGTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAATACAGGCACTTGTAGTCCCATTCTGTCTTGTAGCTCCAGTGT  537

seq1  GGGTTTTGTACATAGTTAATTTTTCGTGTATTTCAAAGGAAGGGACAGCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGTACATAGTTAATTTTTCGTGTATTTCAAAGGAAGGGACAGCT  587

seq1  TGCACAGATGGATGATACTAGAACAAAGAAAAGACATTAGACTCTTCTGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGATGGATGATACTAGAACAAAGAAAAGACATTAGACTCTTCTGG  637

seq1  TGATGGTTCTTTTGTCTAAGACAAGGTTATTCATTCATATTGAACTGCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTCTTTTGTCTAAGACAAGGTTATTCATTCATATTGAACTGCTT  687

seq1  TAAATACTTGGCTGTGGTATGGCGAATATGGTTTCAAAACTAAATACCGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTTGGCTGTGGTATGGCGAATATGGTTTCAAAACTAAATACCGC  737

seq1  CATCTGGTGGTACAAAATCATCGCATTAATACCTAGAAGGTATTTCTAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGTGGTACAAAATCATCGCATTAATACCTAGAAGGTATTTCTAGA  787

seq1  ATTTTATTTCCTTCTTCCATTGTTAGTATCTTCAATGGCGTCATGATTTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTCCTTCTTCCATTGTTAGTATCTTCAATGGCGTCATGATTTC  837

seq1  AAATAAACTGGCTGATATAATCACTAAGCAAAAGAAAAAAAAGTACATAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACTGGCTGATATAATCACTAAGCAAAAGAAAAAAAAGTACATAT  887

seq1  TTAAGACACCAATGAACATTTTGGAATGGGTCTCTCTAGATTCAATTATT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACACCAATGAACATTTTGGAATGGGTCTCTCTAGATTCAATTATT  937

seq1  TAGTAACAAAATTTTCAATCCAAATTATGTTTGCATTGAGAATGGTTGAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACAAAATTTTCAATCCAAATTATGTTTGCATTGAGAATGGTTGAG  987

seq1  AAAATATGCAAAACCAGGGATCCAGTTTTGTCTTAGGCAGTTATGCAAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGCAAAACCAGGGATCCAGTTTTGTCTTAGGCAGTTATGCAAAG  1037

seq1  CAATTTCCTGGTATTTGAGGCTATTATTTATACTATAGTCACAAAAAAGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCTGGTATTTGAGGCTATTATTTATACTATAGTCACAAAAAAGA  1087

seq1  AATCAGACCCACCTGTGGAATCGAGGACTCGTCCTGTGGATGAAAAACAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGACCCACCTGTGGAATCGAGGACTCGTCCTGTGGATGAAAAACAA  1137

seq1  ATCTACTTCCTTATTAGCTATGCTTTGGTTGATTCAGTGTAAACTTTCCT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTCCTTATTAGCTATGCTTTGGTTGATTCAGTGTAAACTTTCCT  1187

seq1  GACCTATGGAATTC  1207
      ||||||||||||||
seq2  GACCTATGGAATTC  1201