BAC Information

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BAC

Clone NameB6Ng01-044H15
Chromosome6 (Build37)1 (Build37)
Map Location 85,609,807 - 85,610,3265,907,805 - 5,909,022
singlet/doubletsingletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044H15.bB6Ng01-044H15.g
ACCDH870217DH870218
length8861,211
definitionDH870217|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H15, 5' end.DH870218|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,609,807 - 85,610,326)(5,907,805 - 5,909,022)
sequence
gaattcctgatctttccaagacttttggcatgaatgggtgttggattttg
tcaaatgctttctccacatctaacgagatgattatgtggttttggtcttt
gagtttgtctatataatgcattacgttgatggatttccttatatttaacc
atccctgcatccctggaatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcggttagcaagaattttattgaggattttggc
atcgatatttataaggaaaattggtctgacgttccctatctttgttgggt
ctttttgtggtttaggtatcagagtaattgtggcttcatagaataagttg
ggtagagtaccttctggttctattttgtggaatagtttgtgaagaactgg
gattagatcttctttgaaggtctgataaaactctgccctaaccccatctg
gtcctgggcttttcttggttgggaggctattaatgactgcttctatttct
ttagaggatataggactgtttagatcattaacctgatcctgatttaactt
tggtacctggtatctgtctagaaatttgtccatttcatccaggttctcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcgggatgtgtcgttatgtctccgttttcatttctgatgttgttaat
taggatgttgttcctgtgccctttagtgagtctagctaatggtttatcta
tctttgttgattttttcccaaagaaccagccttggttgattctttgaata
gtctttcgtgttttccacttgggtaaattcgcccctgagttgattatttt
ctggccatctactcctcttgggtgaatttgcttcct
gaattcagcagaggtgtgtttccgagcacgctagataataggacttgcaa
cagcaatctttatcttacctggcgagtcccagcaaagatctgagtttcct
ggggaggtcagggaggaacccactgtctgctggaggacgctgcagcagca
atgagatgcctgccagcctagtctgtctcctgttgtctgcccagagacta
ctgctggactctccaggagttctcccaagaacctgaagtacaggaagcgc
ggctcagtcaacctgtcaccctttcccactccactcctagaaaaatcctc
tgatctaacagaaaacagcgcccccttcctcaaaagacttctttgctgcc
ttcctgctgttttaattcagttcatctggaattataaaaagctcacctgt
cagaaactaaaactaagaatgacaaagttaaaaaaaataatatcctgttt
ttgaagaacagttggagatgaggttcccataacatgttttatttctttat
tatatgtatcattatttaaatcaatgttaaaattaaatttattttgatcg
tagtcttcccctaccccaagtcgtctagatcctctctctacccacccaac
tttaagctctttctcaaaacaaacaagaacaaaaccaaacacaacaaaaa
ctcccaaatccaagaaaataaaataaagaaacacctaaacagagagagaa
aaaaacccactaaactgtaatcaaataaaaccataaacatacaaaagcaa
aactgtggagatcattaaatgtttgatcaactattcttgaacatgagtcc
tgccctggaagagttgataaatcccattatcactgtattggagaaaacta
attccccctttttacagcaggtataattgacaatttagttgttaacccct
tcctctagtgactggggttttcattagtgcattcttattcaattttagaa
ataataacaaacaaatataaagccaaactgtcactttaaagtggacagga
tgatcaatagaagatacatctaagagaggattagagacttctctcatttg
cccccagaatctgcatcaaaatcactaatccagaagccagaataattttt
gatggaggaattgtacaacttgccagtctgtgtgccatttaacttaaggc
aataaagaatcttctggctggttttctggattgaatggaggaggtatcta
cttagaaccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85609807_85610326
seq2: B6Ng01-044H15.b_399_917 (reverse)

seq1  AGGAAGCAAATTCACCCAAGAGGAGTAGACGG-CAGGAAATAATCAAACT  49
      ||||||||||||||||||||||||||||| || ||| |||||||| ||||
seq2  AGGAAGCAAATTCACCCAAGAGGAGTAGATGGCCAGAAAATAATC-AACT  49

seq1  CAGGGACGAAATCAACCAAGTGG-AAACAAGA---ACTATTCAAAGAATC  95
      ||||| |||| | | |||||||| ||||| ||   |||||||||||||||
seq2  CAGGGGCGAATTTACCCAAGTGGAAAACACGAAAGACTATTCAAAGAATC  99

seq1  AACCAATCGAGGAGCTGGTTCTTT--GAGAAAATCAAC-AAGATAGATAA  142
      ||||||       |||||||||||  || ||||||||| |||||||||||
seq2  AACCAA------GGCTGGTTCTTTGGGAAAAAATCAACAAAGATAGATAA  143

seq1  ACCCTTAGCTAGACTCACTAGAGGGCACAGGGAAAGCATCCTAATTAACA  192
      ||| |||||||||||||||| |||||||||| | | ||||||||||||||
seq2  ACCATTAGCTAGACTCACTAAAGGGCACAGGAACAACATCCTAATTAACA  193

seq1  AAATCAGAAATGAAAAGGGAGATATAACAACAGATCCTGAAGAAATCCAA  242
      | |||||||||||||| ||||| ||||| ||| |||| ||||||||||||
seq2  ACATCAGAAATGAAAACGGAGACATAACGACACATCCCGAAGAAATCCAA  243

seq1  AACACCATCAGATCCTTCTACAAAAGGCTATACTCATCAAAACTGGAGAA  292
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAA  293

seq1  CCTGGATGAAATGGACACGTTTCTAGACAGATACCAGGTACCAAAGTTAA  342
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  CCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAAGTTAA  343

seq1  ATCAAGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATA  392
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCAGGATCAGGTTAATGATCTAAACAGTCCTATATCCTCTAAAGAAATA  393

seq1  GAAGCAGTCATTAATAGTCTCCCAACCAAAAAAAAAGCCCAGGACCAAAT  442
      ||||||||||||||||| |||||||||  || ||||||||||||||| ||
seq2  GAAGCAGTCATTAATAGCCTCCCAACC--AAGAAAAGCCCAGGACCAGAT  441

seq1  GGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGT  492
      ||| |||| |||||||| ||||||||||||||||||||||||||||||||
seq2  GGGGTTAGGGCAGAGTTTTATCAGACCTTCAAAGAAGATCTAATCCCAGT  491

seq1  TCTTCACAAACTATTCCACAAAATAGAA  520
      ||||||||||||||||||||||||||||
seq2  TCTTCACAAACTATTCCACAAAATAGAA  519

seq1: chr1_5907805_5909022
seq2: B6Ng01-044H15.g_69_1279

seq1  GAATTCAGCAGAGGTGTGTTTCCGAGCACGCTAGATAATAGGACTTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGAGGTGTGTTTCCGAGCACGCTAGATAATAGGACTTGCAA  50

seq1  CAGCAATCTTTATCTTACCTGGCGAGTCCCAGCAAAGATCTGAGTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCTTTATCTTACCTGGCGAGTCCCAGCAAAGATCTGAGTTTCCT  100

seq1  GGGGAGGTCAGGGAGGAACCCACTGTCTGCTGGAGGACGCTGCAGCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTCAGGGAGGAACCCACTGTCTGCTGGAGGACGCTGCAGCAGCA  150

seq1  ATGAGATGCCTGCCAGCCTAGTCTGTCTCCTGTTGTCTGCCCAGAGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGCCTGCCAGCCTAGTCTGTCTCCTGTTGTCTGCCCAGAGACTA  200

seq1  CTGCTGGACTCTCCAGGAGTTCTCCCAAGAACCTGAAGTACAGGAAGCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGACTCTCCAGGAGTTCTCCCAAGAACCTGAAGTACAGGAAGCGC  250

seq1  GGCTCAGTCAACCTGTCACCCTTTCCCACTCCACTCCTAGAAAAATCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTCAACCTGTCACCCTTTCCCACTCCACTCCTAGAAAAATCCTC  300

seq1  TGATCTAACAGAAAACAGCGCCCCCTTCCTCAAAAGACTTCTTTGCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAACAGAAAACAGCGCCCCCTTCCTCAAAAGACTTCTTTGCTGCC  350

seq1  TTCCTGCTGTTTTAATTCAGTTCATCTGGAATTATAAAAAGCTCACCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTGTTTTAATTCAGTTCATCTGGAATTATAAAAAGCTCACCTGT  400

seq1  CAGAAACTAAAACTAAGAATGACAAAGTTAAAAAAAATAATATCCTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTAAAACTAAGAATGACAAAGTTAAAAAAAATAATATCCTGTTT  450

seq1  TTGAAGAACAGTTGGAGATGAGGTTCCCATAACATGTTTTATTTCTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACAGTTGGAGATGAGGTTCCCATAACATGTTTTATTTCTTTAT  500

seq1  TATATGTATCATTATTTAAATCAATGTTAAAATTAAATTTATTTTGATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATCATTATTTAAATCAATGTTAAAATTAAATTTATTTTGATCG  550

seq1  TAGTCTTCCCCTACCCCAAGTCGTCTAGATCCTCTCTCTACCCACCCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCCCCTACCCCAAGTCGTCTAGATCCTCTCTCTACCCACCCAAC  600

seq1  TTTAAGCTCTTTCTCAAAACAAACAAGAACAAAACCAAACACAACAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTCTTTCTCAAAACAAACAAGAACAAAACCAAACACAACAAAAA  650

seq1  CTCCCAAATCCAAGAAAATAAAATAAAGAAACACCTAAACAGAGAGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAATCCAAGAAAATAAAATAAAGAAACACCTAAACAGAGAGAGAA  700

seq1  AAAAACCCACTAAACTGTAATCAAATAAAACCATAAACATACAAAAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCACTAAACTGTAATCAAATAAAACCATAAACATACAAAAGCAA  750

seq1  AACTGTGGAGATCATTAAATG-TTGATCAACTATTCTTGAACATGAGTCC  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACTGTGGAGATCATTAAATGTTTGATCAACTATTCTTGAACATGAGTCC  800

seq1  TGCCCTGGAAGAGTTGATAAAT-CCAATATCACTGTATTGGAGAAAACTA  848
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  TGCCCTGGAAGAGTTGATAAATCCCATTATCACTGTATTGGAGAAAACTA  850

seq1  ATTCCCCC-TTTTACAGCAGGTATAATTGACAATTTAGTTGTTAA-CCCT  896
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  ATTCCCCCTTTTTACAGCAGGTATAATTGACAATTTAGTTGTTAACCCCT  900

seq1  TCCTCTAGTGACT-GGGTTTTCATTAGTGCATTCATATTC-ATTTTAGAA  944
      ||||||||||||| |||||||||||||||||||| ||||| |||||||||
seq2  TCCTCTAGTGACTGGGGTTTTCATTAGTGCATTCTTATTCAATTTTAGAA  950

seq1  AATATAACAAAACAAAATATAAAGCAAAAACTGTCACATTAAAGTTGGAC  994
      |  ||||||||   |||||||||||  |||||||||| |||||| |||||
seq2  ATAATAACAAA--CAAATATAAAGC-CAAACTGTCACTTTAAAG-TGGAC  996

seq1  AGGATGAATCAATAGAAGGAAACAAATCCAAGAGAAGGATTTAGAGAC-T  1043
      |||||| |||||||||||   | | ||| ||||| |||| |||||||| |
seq2  AGGATG-ATCAATAGAAG---ATACATCTAAGAG-AGGA-TTAGAGACTT  1040

seq1  CTCTCATTTGCACACCCAGAAATCGCA-CAAAAACACTAATCTAGAAGCT  1092
      ||||||||||  | |||||||   ||| ||||| |||||||| |||||| 
seq2  CTCTCATTTG--CCCCCAGAATCTGCATCAAAATCACTAATCCAGAAGCC  1088

seq1  AGAAT-ATATTTGAT-GAGGACATGGTACAAACCTGCACAGTCTGTGTG-  1139
      ||||| || |||||| ||||| || |||| ||| ||| ||||||||||| 
seq2  AGAATAATTTTTGATGGAGGA-ATTGTAC-AACTTGC-CAGTCTGTGTGC  1135

seq1  CATATAAC-TAAGGTATATAAAGACTCCTTCTGCCTGTTTTCCTGAGTTC  1188
      ||| |||| ||||| | ||||||| | |||||| ||| ||| |||  |  
seq2  CATTTAACTTAAGGCA-ATAAAGAAT-CTTCTGGCTGGTTTTCTGGAT--  1181

seq1  TGAATGGAGGAGGCATCCCACTTAG-ACCTA  1218
      ||||||||||||| || | |||||| |||||
seq2  TGAATGGAGGAGGTAT-CTACTTAGAACCTA  1211