BAC Information

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BAC

Clone NameB6Ng01-044H22
Chromosome1 (Build37)
Map Location 97,630,467 - 97,771,043
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044H22.bB6Ng01-044H22.g
ACCDH870230DH870231
length1,0351,085
definitionDH870230|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H22, 5' end.DH870231|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,630,467 - 97,631,509)(97,769,956 - 97,771,043)
sequence
gaattcatgaaagccagacaattttgtaaaaataattttatttagcatga
taggataaagaaataggagctattctgcataaattaaattgatttttgtt
gttgttgttgtttgttttttgagacagggtttctctgtataaccctgact
gttcctaaatttttttataaagatgtgctttatttggaaaaatgtgtatg
atttttttttatttcattttttaactgaaaaattctcctctatgcataat
caacatatttccttcaattttttttctgatgagacttaagaacatgaatt
acaattccttgagtttatttccttataaatatattattttatgggaaaac
ctacatgttcttttaaacattttatctttagtagacagaacaaatgaatg
aaaattagatgacaatttagaaattgctttaaattatgaaaaaaatatga
atgtacatctctaagctatactatgatattattttcataaattttaatat
gtacttatgtataatttgtatcatctttgtttgtatctgattgcctctga
gtgtgagtttgagtgtgagtgtatgaaggtagtgtgtgtggttatgtgca
cttacttgcctcagcttgcatatggaagatggacataacctttttttcta
tttgtcaatcctgtcctttcaccctgctgaggtaaaagtctcttgtttca
ctgcttgaggactgttagcccataagcttccaggtttggtgtaactgtct
tctatcttattctaggcatgctagaattacaaacacatgcacataccagg
ctttatgtgggttctgaaaatgacaatggtgtagaaagaactttatttct
gggacacctctcttgcctccgcggttgtttgtttgtggtttgtttacaat
aaaaaaggtttggaaacattgagaatgatctaaagcacaaaattgtaggg
atggctagattgttctagcccaagggaacatataccttgtgcatccttcc
ctccagctagggtgactgcgaagggggcgaaagaa
gaattcactttgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgcctcctgagtgctgggattaaaggtgtacgccaccatgcccagcta
aatctataccatcttgatataggaatatgagcagaaatgcagaagatcaa
agaatagaaaataaacatttgaagtgataaagaacaaggaatttccttac
attgacctaaatatggacacaggagatgaaaaaatataaattggagtaaa
tgttcaacaaacagagaaactctaggtatattatattgaaactgtacaaa
atcaaacaagaagtatccttaaaggagccagatagaaatacttttttatt
ttttattttagaagtggaagaacaaatgtaagatcttcttctacaatagc
cttagaaattctacaaagacagttaatgaaatatttatgttttaggtaaa
aaaaaaaatctgtacaatctttcttttaaactaaagagaaaaaaaaactt
cctcaagggaaaaaaatctacatttaagaaaatgacaaaaagtaatatta
tttagagtaagaacagaggtaaattgactgaaacctacataaagatacat
gatgtgatgaatatatttttgtggaaataatagtagaattggtatagtaa
attatatgcttacatcttatatctttttataatgtactcttattctcttc
attacatgcacacatatgttttccagtacctcctcccattatgttacatt
tttaaatgtttatactgaaatattattcaattcaatagttattttctcag
catttaaatgtgatcttccttatgtacacatgcctgtactctaaacatac
atacagctatgtgtatatcatggtgtaagcatttggcatcaatgtcagcg
atgctataactgctgaagagataaattacaggaaatatacatgtatacat
atacacgcacacacaaacagtcacacacacacactcaagcatcctcactt
cattgcagtgctacagaaaaaggctttattaagtgctaaatgaaagtttc
ttcccctaacttgggaacatggtaagaaaataaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97630467_97631509
seq2: B6Ng01-044H22.b_45_1079

seq1  GAATTCATGAAAGCCAGACAATTTTGTAAAAATAATTTTATTTAGCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAAGCCAGACAATTTTGTAAAAATAATTTTATTTAGCATGA  50

seq1  TAGGATAAAGAAATAGGAGCTATTCTGCATAAATTAAATTGATTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAAAGAAATAGGAGCTATTCTGCATAAATTAAATTGATTTTTGTT  100

seq1  GTTGTTGTTGTTTGTTTTTTGAGACAGGGTTTCTCTGTATAACCCTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTTGTTTTTTGAGACAGGGTTTCTCTGTATAACCCTGACT  150

seq1  GTTCCTAAATTTTTTTATAAAGATGTGCTTTATTTGGAAAAATGTGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAAATTTTTTTATAAAGATGTGCTTTATTTGGAAAAATGTGTATG  200

seq1  ATTTTTTTTTATTTCATTTTTTAACTGAAAAATTCTCCTCTATGCATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTATTTCATTTTTTAACTGAAAAATTCTCCTCTATGCATAAT  250

seq1  CAACATATTTCCTTCAATTTTTTTTCTGATGAGACTTAAGAACATGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATTTCCTTCAATTTTTTTTCTGATGAGACTTAAGAACATGAATT  300

seq1  ACAATTCCTTGAGTTTATTTCCTTATAAATATATTATTTTATGGGAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCTTGAGTTTATTTCCTTATAAATATATTATTTTATGGGAAAAC  350

seq1  CTACATGTTCTTTTAAACATTTTATCTTTAGTAGACAGAACAAATGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTTCTTTTAAACATTTTATCTTTAGTAGACAGAACAAATGAATG  400

seq1  AAAATTAGATGACAATTTAGAAATTGCTTTAAATTATGAAAAAAATATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGATGACAATTTAGAAATTGCTTTAAATTATGAAAAAAATATGA  450

seq1  ATGTACATCTCTAAGCTATACTATGATATTATTTTCATAAATTTTAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATCTCTAAGCTATACTATGATATTATTTTCATAAATTTTAATAT  500

seq1  GTACTTATGTATAATTTGTATCATCTTTGTTTGTATCTGATTGCCTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATGTATAATTTGTATCATCTTTGTTTGTATCTGATTGCCTCTGA  550

seq1  GTGTGAGTTTGAGTGTGAGTGTATGAAGGTAGTGTGTGTGGTTATGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTTTGAGTGTGAGTGTATGAAGGTAGTGTGTGTGGTTATGTGCA  600

seq1  CTTACTTGCCTCAGCTTGCATATGGAAGATGGACATAACCTTTTTTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGCCTCAGCTTGCATATGGAAGATGGACATAACCTTTTTTTCTA  650

seq1  TTTGTCAATCCTGTCCTTTCACCCTGCTGAGGTAAAAGTCTCTTG-TTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTGTCAATCCTGTCCTTTCACCCTGCTGAGGTAAAAGTCTCTTGTTTCA  700

seq1  CTGCTTGAGGACTGTTAGCCCATAAGCTTCCAGGTTTGGTGTAACTGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGAGGACTGTTAGCCCATAAGCTTCCAGGTTTGGTGTAACTGTCT  750

seq1  TCTATCTTATTCTAGGCATGCTAGAATTACAAACACATGCACATACCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTATTCTAGGCATGCTAGAATTACAAACACATGCACATACCAGG  800

seq1  CTTTATGTGGGTTCTGAAAATGACAATGGTGTAGAAAGAACTTTATTTAC  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTTATGTGGGTTCTGAAAATGACAATGGTGTAGAAAGAACTTTATTT-C  849

seq1  TGGGACACCTCTCTTGCCCTCGTGGTTTGTTTGTTTGTTTGTTTGTTTAC  899
      ||||||||||||||||||  || || ||||||||||| | ||||||||||
seq2  TGGGACACCTCTCTTGCCTCCGCGG-TTGTTTGTTTG-TGGTTTGTTTAC  897

seq1  TATATAAAAGGTTTTGGAAACATTGAGATTGTACTAGAGTACAGATATTG  949
       ||| |||||| |||||||||||||||| ||  ||| || ||| | ||||
seq2  AATAAAAAAGG-TTTGGAAACATTGAGAATGATCTAAAGCACA-AAATTG  945

seq1  -AGGGATGGTCAGAATGTTCATGCCCAAAGGGAACATATACCTTGTGCAT  998
       ||||||||  ||| |||||  |||| |||||||||||||||||||||||
seq2  TAGGGATGGCTAGATTGTTCTAGCCC-AAGGGAACATATACCTTGTGCAT  994

seq1  TCTTCCCCAAGGCTCAGGGATGACTGCAGAAGGGGGCAGAAAGAA  1043
       ||||||    ||| |||| ||||||| ||||||||| |||||||
seq2  CCTTCCCTCCAGCT-AGGG-TGACTGC-GAAGGGGGC-GAAAGAA  1035

seq1: chr1_97769956_97771043
seq2: B6Ng01-044H22.g_68_1152 (reverse)

seq1  TCTTATTTTTCTTCACATGTTCCCATG-TAGAGGGAGAAACTTTCATTTA  49
      ||||| |||||||  |||||||||| | ||| || |||||||||||||||
seq2  TCTTA-TTTTCTTACCATGTTCCCAAGTTAGGGGAAGAAACTTTCATTTA  49

seq1  GCACTAAATAAAGCCCTTTTTCTGGTAGCACTGCACTGAAGTGAGGATGC  99
      ||||| ||||||| ||||||||| ||||||||||| ||||||||||||||
seq2  GCACTTAATAAAG-CCTTTTTCT-GTAGCACTGCAATGAAGTGAGGATGC  97

seq1  TTTGAGTGTGTGTGTGTGACTGTTTGTGTGTGCGTGTATATGTATACATG  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGAGTGTGTGTGTGTGACTGTTTGTGTGTGCGTGTATATGTATACATG  146

seq1  TATATTTACCTGTAATTTATCTCTTCAGCAGTTATAGCATCGCTGACATT  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTT-CCTGTAATTTATCTCTTCAGCAGTTATAGCATCGCTGACATT  195

seq1  GATGCCAAATGCTTACACCATGATATACACATAGCTGTATGTATGTTTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAAATGCTTACACCATGATATACACATAGCTGTATGTATGTTTAG  245

seq1  AGTACAGGCATGTGTACATAAGGAAGATCACATTTAAATGCTGAGAAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGCATGTGTACATAAGGAAGATCACATTTAAATGCTGAGAAAAT  295

seq1  AACTATTGAATTGAATAATATTTCAGTATAAACATTT-AAAATGTAACAT  348
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACTATTGAATTGAATAATATTTCAGTATAAACATTTAAAAATGTAACAT  345

seq1  AATGGGAGGAGGTACTGGAAAACATATGTGTGCATGTAATGAAGAGAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGGAGGTACTGGAAAACATATGTGTGCATGTAATGAAGAGAATA  395

seq1  AGAGTACATTATAAAAAGATATAAGATGTAAGCATATAATTTACTATACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACATTATAAAAAGATATAAGATGTAAGCATATAATTTACTATACC  445

seq1  AATTCTACTATTATTTCCACAAAAATATATTCATCACATCATGTATCTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACTATTATTTCCACAAAAATATATTCATCACATCATGTATCTTT  495

seq1  ATGTAGGTTTCAGTCAATTTACCTCTGTTCTTACTCTAAATAATATTACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGTTTCAGTCAATTTACCTCTGTTCTTACTCTAAATAATATTACT  545

seq1  TTTTGTCATTTTCTTAAATGTAGATTTTTTTCCCTTGAGGAAGTTTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCATTTTCTTAAATGTAGATTTTTTTCCCTTGAGGAAGTTTTTTT  595

seq1  TTCTCTTTAGTTTAAAAGAAAGATTGTACAGATTTTTTTTTTTACCTAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTAGTTTAAAAGAAAGATTGTACAGATTTTTTTTTTTACCTAAA  645

seq1  ACATAAATATTTCATTAACTGTCTTTGTAGAATTTCTAAGGCTATTGTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATATTTCATTAACTGTCTTTGTAGAATTTCTAAGGCTATTGTAG  695

seq1  AAGAAGATCTTACATTTGTTCTTCCACTTCTAAAATAAAAAATAAAAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATCTTACATTTGTTCTTCCACTTCTAAAATAAAAAATAAAAAAG  745

seq1  TATTTCTATCTGGCTCCTTTAAGGATACTTCTTGTTTGATTTTGTACAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATCTGGCTCCTTTAAGGATACTTCTTGTTTGATTTTGTACAGT  795

seq1  TTCAATATAATATACCTAGAGTTTCTCTGTTTGTTGAACATTTACTCCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATAATATACCTAGAGTTTCTCTGTTTGTTGAACATTTACTCCAA  845

seq1  TTTATATTTTTTCATCTCCTGTGTCCATATTTAGGTCAATGTAAGGAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTTTCATCTCCTGTGTCCATATTTAGGTCAATGTAAGGAAAT  895

seq1  TCCTTGTTCTTTATCACTTCAAATGTTTATTTTCTATTCTTTGATCTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTCTTTATCACTTCAAATGTTTATTTTCTATTCTTTGATCTTCT  945

seq1  GCATTTCTGCTCATATTCCTATATCAAGATGGTATAGATTTAGCTGGGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTGCTCATATTCCTATATCAAGATGGTATAGATTTAGCTGGGCA  995

seq1  TGGTGGCGTACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCGTACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGA  1045

seq1  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTC  1085