BAC Information

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BAC

Clone NameB6Ng01-044L23
Chromosome1 (Build37)
Map Location 23,976,837 - 23,977,975
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2, Smap1
Downstream gene1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L23.bB6Ng01-044L23.g
ACCDH870414DH870415
length5511,130
definitionDH870414|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L23, 5' end.DH870415|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
attaattttaacttttctcccttctccgctctaaggagtttatcaaaatg
aagagttaatgccctgttattggttctgagacaacactgccactgtttcc
ttacaaggaaatttaaacagcaaagatgctgagctcgactgcagaacgca
ccgagcatagtctggtccacgggtcctcattgggctacacatcaaaatca
ccaatatgctcgcctctcattggttaggggaggagccaggtgctggtgtg
ggagctggtgttttgttgttgttggtggtggtggtggttctaagagagga
taacagatgcattattatgggaatgtaactattataaaaactaaatccca
gaagctttcatttttgctaatgtcacttattagcaaataacccagaagca
gagtacagaatcctggagcctcagcagcctaccttgaaatgattgacaaa
ttccacgtggatgatcacatacataatatttaagatatggtatgatatgt
ggagcttctgttcacaatgttctcttttgtttctatatttcatagtcatt
a

gaattcctactgaattccaagtttgtcagcttcaaggattttctaggatg
ttggaacactggcgaaggcttagctctgtcagaattcaatctttaaaggc
acttataaataaagtaatactaaaagagagcacgtggatccatacaccag
actaatgcggggatagggtatgagtatacaggttatgagaactccaaggt
tccaggaggtgagtttctctgaaactctttgcctcatgagtgcttccagg
cttctcggcctgtcaagcagactacactggagtgtgcgtagcacccaact
aaatgttgttcttataagagttgctttggtcatggtatctgtttatagca
gtaaaacactaagacagtttccttgctttaaaaacaaaggaataataata
acaacagtaaaccaatcctattggaacatgatagtgataccgaactgctg
gtactgttgcccgtatcctggaatacttgctagggaccctacctgccctt
gagggttggagctgaggtggcacaggatcaacaacacagactctgggggc
aggtgagaaacactgcagcaagcccatctgaatgctgctgtaagctcctt
taataccctccaccacaccccactggtcccaagaaagcatctcttctaaa
cagcaattctcaattggctggcattgctgatggtatcaacaattcttggt
ctctcagacagtctttaattaggtcctcctgtagggaattgcctttgtgg
ctatgcaggccccagcatttatgtagaggcaagatggccacgcagttcct
cctacactagtacctctgtctctacagaatacaatcaggaagaggcctgc
ctaggagcataagccaggaacagctgtggctgttattgctaggcagctac
tccaaagctgctccacacgattgtactgagttggctgttactgagaccat
agaagtttctctgctaacttctggtcagattgcaagtccatccatgatgt
gttgcatattagcaaataaagaattttatcttgtctttaatcaaatggag
gcctctgtaatttcaggtctttcaggcatggagagcccaaaccctgcaga
atctttggtattcatgtgagggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23976837_23977975
seq2: B6Ng01-044L23.g_69_1198 (reverse)

seq1  TCCCCCCCCCCCTACATGAATACAAAGGATTCTGCATGGGGTTTGGGCTC  50
      |||||||||||  |||||||||| || |||||||||  ||||||||||||
seq2  TCCCCCCCCCCTCACATGAATACCAAAGATTCTGCA--GGGTTTGGGCTC  48

seq1  TCACTGCCTGAAAGACCTGAAATTACAGA-GCCTCCATTTTTGATGTAAA  99
      ||  ||||||||||||||||||||||||| |||||||  |||||| ||||
seq2  TCCATGCCTGAAAGACCTGAAATTACAGAGGCCTCCA--TTTGAT-TAAA  95

seq1  GGACAAGATAAAATTCTTTATTTTGCTAATATTGCAAACACATCATTGGA  149
       ||||||||||||||||||| |||||||||| ||| ||||||||| ||||
seq2  -GACAAGATAAAATTCTTTA-TTTGCTAATA-TGC-AACACATCA-TGGA  140

seq1  TGGACTTGCAATCTGACCAGAAGTTAGCAGAGAAACTTCTATGGTCTCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGCAATCTGACCAGAAGTTAGCAGAGAAACTTCTATGGTCTCAG  190

seq1  TAACAGCCAACTCAGTACAATCGTGTGGAGCAGCTTTGGAGTAGCTGCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCAACTCAGTACAATCGTGTGGAGCAGCTTTGGAGTAGCTGCCT  240

seq1  AGCAATAACAGCCACAGCTGTTCCTGGCTTATGCTCCTAGGCAGGCCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAACAGCCACAGCTGTTCCTGGCTTATGCTCCTAGGCAGGCCTCT  290

seq1  TCCTGATTGTATTCTGTAGAGACAGAGGTACTAGTGTAGGAGGAACTGCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTGTATTCTGTAGAGACAGAGGTACTAGTGTAGGAGGAACTGCG  340

seq1  TGGCCATCTTGCCTCTACATAAATGCTGGGGCCTGCATAGCCACAAAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCTTGCCTCTACATAAATGCTGGGGCCTGCATAGCCACAAAGGC  390

seq1  AATTCCCTACAGGAGGACCTAATTAAAGACTGTCTGAGAGACCAAGAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTACAGGAGGACCTAATTAAAGACTGTCTGAGAGACCAAGAATT  440

seq1  GTTGATACCATCAGCAATGCCAGCCAATTGAGAATTGCTGTTTAGAAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATACCATCAGCAATGCCAGCCAATTGAGAATTGCTGTTTAGAAGAG  490

seq1  ATGCTTTCTTGGGACCAGTGGGGTGTGGTGGAGGGTATTAAAGGAGCTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCTTGGGACCAGTGGGGTGTGGTGGAGGGTATTAAAGGAGCTTA  540

seq1  CAGCAGCATTCAGATGGGCTTGCTGCAGTGTTTCTCACCTGCCCCCAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCATTCAGATGGGCTTGCTGCAGTGTTTCTCACCTGCCCCCAGAG  590

seq1  TCTGTGTTGTTGATCCTGTGCCACCTCAGCTCCAACCCTCAAGGGCAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTGTTGATCCTGTGCCACCTCAGCTCCAACCCTCAAGGGCAGGT  640

seq1  AGGGTCCCTAGCAAGTATTCCAGGATACGGGCAACAGTACCAGCAGTTCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCCTAGCAAGTATTCCAGGATACGGGCAACAGTACCAGCAGTTCG  690

seq1  GTATCACTATCATGTTCCAATAGGATTGGTTTACTGTTGTTATTATTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTATCATGTTCCAATAGGATTGGTTTACTGTTGTTATTATTATT  740

seq1  CCTTTGTTTTTAAAGCAAGGAAACTGTCTTAGTGTTTTACTGCTATAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTTTTAAAGCAAGGAAACTGTCTTAGTGTTTTACTGCTATAAAC  790

seq1  AGATACCATGACCAAAGCAACTCTTATAAGAACAACATTTAGTTGGGTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCATGACCAAAGCAACTCTTATAAGAACAACATTTAGTTGGGTGC  840

seq1  TACGCACACTCCAGTGTAGTCTGCTTGACAGGCCGAGAAGCCTGGAAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCACACTCCAGTGTAGTCTGCTTGACAGGCCGAGAAGCCTGGAAGCA  890

seq1  CTCATGAGGCAAAGAGTTTCAGAGAAACTCACCTCCTGGAACCTTGGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGGCAAAGAGTTTCAGAGAAACTCACCTCCTGGAACCTTGGAGT  940

seq1  TCTCATAACCTGTATACTCATACCCTATCCCCGCATTAGTCTGGTGTATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAACCTGTATACTCATACCCTATCCCCGCATTAGTCTGGTGTATG  990

seq1  GATCCACGTGCTCTCTTTTAGTATTACTTTATTTATAAGTGCCTTTAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACGTGCTCTCTTTTAGTATTACTTTATTTATAAGTGCCTTTAAAG  1040

seq1  ATTGAATTCTGACAGAGCTAAGCCTTCGCCAGTGTTCCAACATCCTAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTCTGACAGAGCTAAGCCTTCGCCAGTGTTCCAACATCCTAGAA  1090

seq1  AATCCTTGAAGCTGACAAACTTGGAATTCAGTAGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTGAAGCTGACAAACTTGGAATTCAGTAGGAATTC  1130


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