BAC Information

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BAC

Clone NameB6Ng01-045O02
Chromosome1 (Build37)
Map Location 78,582,066 - 78,708,087
singlet/doubletdoublet
Overlap geneAcsl3, Utp14b
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1
Downstream geneLOC620521, Kcne4, LOC100039260, EG545332, Scg2, Ap1s3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045O02.bB6Ng01-045O02.g
ACCDH871208DH871209
length5661,132
definitionDH871208|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O02, 5' end.DH871209|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,707,516 - 78,708,087)(78,582,066 - 78,583,206)
sequence
ccagtaagaagaaactgtgaaggcccggggaaaagctgtagctgtggatc
cccccccccctccaatcccatctgaaagtccccagatagaaaatctattc
gtatacatctgcaacccccacagaagcatactaaaaagaaagcttctaag
agtggcatactcgatgaagtactcaagctaggatcatgtttttatttaat
aataaaacccacatgggagaaaaactcttgctttcttcaaagggaatgag
gactgatatgaaaaggaaccaccagtgggagacgtgttattcccatggtg
tcaccagataagaacactagatggataaaggtgggtaagacaccagctcc
atacaccttctctggaggccacatcatgttgaggcactgggtttactgag
ccaattctgaatgtatgagcctttaacttacatttgagacaatagcaagg
aagggatgcatctgggtaaagtgtgcatgtgcgtgttatagtatgtcatc
atctattcagagtttggatcttgtgtgtgtgtgagtgagtgagtgagaga
gagagatagagatagt
gaattcccgtcacagtatccaagtgcagggattgcaggtgtgagcgacca
tgactggtttcttacatgttaaggaactgaacatagcagctggatgatgg
tagagcacacctgtagccccagaacttgggaggcagaggcaggcagacct
ctgagttcaaggccagcctggtctacacagttagttccagatcagccagg
gatacatagaaaatccctgtctcaattaatttgttaaaataaaataaaaa
taaaaaataaaaaagaagctcaacatagcaaacattggccttatgtttgc
aagaaattaaggccttattaatgctgctactgctgtgtgcatccagcatt
ctcaaatgtagtgttggctggtaaaaagtgggtgttggaaagcccttcct
tgccatttccctcttctacactagcctcactccaaccagatgttggcttt
tgtggccattatttgtgttctgtgccatcttaggatggccccataatttt
tgttcaaacccaacgatgtgagctaaattgtgtctctcaggaaatcttaa
cacccaggacctcaggatgagactacttggaaaccgggtttctgcagagg
tggtcttttaaaaatgaagtcactggagttgagtcccaatccatagatga
cagacatatttataaaaagggagagatttaggtacagggacagattcaca
cagagagacctgtgtagacacatacagaaaagccagctatgtggctggag
ccaaatgttttaaaggaacaccaggcccacgttaaagatggaaggcaaga
gctaactccaaagttgtcctctgatatccacacgtgtgtgtggcatgagc
ccttcccccttcatcatgcatacaggcctgtgtgcatgggtgccacacga
gcccggaccacacctccgcacactcacacacacctccacataccaattat
aatagattagaaattaaagggctggcaagatccactgacttgctcttcaa
aggtcctgagttcaatccagcaaacacatggtggctcacaacccacttgg
aaatgaatctgatgcccctattcttgtgcgtcgtgaaaccagctacgatt
acttatgttacataaataatataaatctttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78707516_78708087
seq2: B6Ng01-045O02.b_47_618 (reverse)

seq1  ACTATCTCTATCTCTCTCTCTCACTCACTCACTCACACACACACAAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCTATCTCTCTCTCTCACTCACTCACTCACACACACACAAGATC  50

seq1  CAAACTCTGAATAGATGATGACATACTATAACACGCACATGCACACTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTGAATAGATGATGACATACTATAACACGCACATGCACACTTTA  100

seq1  CCCAGATGCATCCCTTCCTTGCTATTGTCTCAAATGTAAGTTAAAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGCATCCCTTCCTTGCTATTGTCTCAAATGTAAGTTAAAGGCTC  150

seq1  ATACATTCAGAATTGGCTCAGTAAACCCAGTGCCTCAACATGATGTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCAGAATTGGCTCAGTAAACCCAGTGCCTCAACATGATGTGGCC  200

seq1  TCCAGAGAAGGTGTATGGAGCTGGTGTCTTACCCACCTTTATCCATCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAAGGTGTATGGAGCTGGTGTCTTACCCACCTTTATCCATCTAG  250

seq1  TGTTCTTATCTGGTGACACCATGGGAATAACACGTCTCCCACTGGTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTATCTGGTGACACCATGGGAATAACACGTCTCCCACTGGTGGTT  300

seq1  CCTTTTCATATCAGTCCTCATTCCCTTTGAAGAAAGCAAGAGTTTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCATATCAGTCCTCATTCCCTTTGAAGAAAGCAAGAGTTTTTCTC  350

seq1  CCATGTGGGTTTTATTATTAAATAAAAACATGATCCTAGCTTGAGTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGGTTTTATTATTAAATAAAAACATGATCCTAGCTTGAGTACTT  400

seq1  CATCGAGTATGCCACTCTTAGAAGCTTTCTTTTTAGTATGCTTCTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAGTATGCCACTCTTAGAAGCTTTCTTTTTAGTATGCTTCTGTGGG  450

seq1  GGTTGCAGATGTATACGAATAGATTTTCTATCTGGGGACTTTCAGATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGATGTATACGAATAGATTTTCTATCTGGGGACTTTCAGATGGG  500

seq1  ATTGGAGGGGGGGGGGGATCCACAGCTACAGCTTTTCCCCGGGCCTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGGGGGGGGGGGATCCACAGCTACAGCTTTTCCCCGGGCCTTCAC  550

seq1  AGTTTCTTCTTACTGGGAATTC  572
      ||||||||||||||||||||||
seq2  AGTTTCTTCTTACTGGGAATTC  572

seq1: chr1_78582066_78583206
seq2: B6Ng01-045O02.g_68_1199

seq1  GAATTCCCGTCACAGTATCCAAGTGCAGGGATTGCAGGTGTGAGCGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTCACAGTATCCAAGTGCAGGGATTGCAGGTGTGAGCGACCA  50

seq1  TGACTGGTTTCTTACATGTTAAGGAACTGAACATAGCAGCTGGATGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTTTCTTACATGTTAAGGAACTGAACATAGCAGCTGGATGATGG  100

seq1  TAGAGCACACCTGTAGCCCCAGAACTTGGGAGGCAGAGGCAGGCAGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCACACCTGTAGCCCCAGAACTTGGGAGGCAGAGGCAGGCAGACCT  150

seq1  CTGAGTTCAAGGCCAGCCTGGTCTACACAGTTAGTTCCAGATCAGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAGGCCAGCCTGGTCTACACAGTTAGTTCCAGATCAGCCAGG  200

seq1  GATACATAGAAAATCCCTGTCTCAATTAATTTGTTAAAATAAAATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATAGAAAATCCCTGTCTCAATTAATTTGTTAAAATAAAATAAAAA  250

seq1  TAAAAAATAAAAAAGAAGCTCAACATAGCAAACATTGGCCTTATGTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAAAAAAGAAGCTCAACATAGCAAACATTGGCCTTATGTTTGC  300

seq1  AAGAAATTAAGGCCTTATTAATGCTGCTACTGCTGTGTGCATCCAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAAGGCCTTATTAATGCTGCTACTGCTGTGTGCATCCAGCATT  350

seq1  CTCAAATGTAGTGTTGGCTGGTAAAAAGTGGGTGTTGGAAAGCCCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGTAGTGTTGGCTGGTAAAAAGTGGGTGTTGGAAAGCCCTTCCT  400

seq1  TGCCATTTCCCTCTTCTACACTAGCCTCACTCCAACCAGATGTTGGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTCCCTCTTCTACACTAGCCTCACTCCAACCAGATGTTGGCTTT  450

seq1  TGTGGCCATTATTTGTGTTCTGTGCCATCTTAGGATGGCCCCATAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCATTATTTGTGTTCTGTGCCATCTTAGGATGGCCCCATAATTTT  500

seq1  TGTTCAAACCCAACGATGTGAGCTAAATTGTGTCTCTCAGGAAATCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAACCCAACGATGTGAGCTAAATTGTGTCTCTCAGGAAATCTTAA  550

seq1  CACCCAGGACCTCAGGATGAGACTACTTGGAAACCGGGTTTCTGCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGACCTCAGGATGAGACTACTTGGAAACCGGGTTTCTGCAGAGG  600

seq1  TGGTCTTTTAAAAATGAAGTCACTGGAGTTGAGTCCCAATCCATAGATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTTAAAAATGAAGTCACTGGAGTTGAGTCCCAATCCATAGATGA  650

seq1  CAGACATATTTATAAAAAGGGAGAGATTTAGGTACAGGGACAGATTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATATTTATAAAAAGGGAGAGATTTAGGTACAGGGACAGATTCACA  700

seq1  CAGAGAGACCTGTGTAGACACATACAGAAAAGCCAGCTATGTGGCTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACCTGTGTAGACACATACAGAAAAGCCAGCTATGTGGCTGGAG  750

seq1  CCAAATGTTTTAAAGGAACACCAGGCCCACGTTAAAGATGGAAGGCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTTTTAAAGGAACACCAGGCCCACGTTAAAGATGGAAGGCAAGA  800

seq1  GCTAACTCCAAAGTTGTCCTCTGATATCCACACGTGTGTTGTGGCATGAG  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTAACTCCAAAGTTGTCCTCTGATATCCACACGTGTG-TGTGGCATGAG  849

seq1  CCCTTCCCCCTTCATCAATGCATACAGGCCTGTGTGCATGGGTG-CACAC  899
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  CCCTTCCCCCTTCATC-ATGCATACAGGCCTGTGTGCATGGGTGCCACAC  898

seq1  GAGCACAGACACACACACACACACACACACACACACACACACACACAATA  949
      |||| | ||| |||||   | ||||| |||||||||   |||| ||    
seq2  GAGCCCGGAC-CACACCTCCGCACACTCACACACACCTCCACATAC----  943

seq1  CACAATAATAAATAAGATTAAGAAATTAAAGGGCTGGCAAGATCCACTGA  999
        |||| ||||   ||||| ||||||||||||||||||||||||||||||
seq2  --CAATTATAA--TAGATT-AGAAATTAAAGGGCTGGCAAGATCCACTGA  988

seq1  C-TGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAAACACATGGTGGC  1048
      | ||||||| ||||||||||||||||||   |||||||||||||||||||
seq2  CTTGCTCTT-CAAAGGTCCTGAGTTCAA--TCCAGCAAACACATGGTGGC  1035

seq1  TCACAA-CCACTTGTAATATG-ATCTGATG-CCCTATTCTTGTGCGTC-T  1094
      |||||| ||||||| || ||| |||||||| ||||||||||||||||| |
seq2  TCACAACCCACTTGGAA-ATGAATCTGATGCCCCTATTCTTGTGCGTCGT  1084

seq1  GAAGACAGCTACAGTGTACTTATG-TACAATAATAA-ATAAATCTTTGG  1141
      |||  ||||||| |  |||||||| ||||  ||||| ||||||||||||
seq2  GAAACCAGCTAC-GATTACTTATGTTACATAAATAATATAAATCTTTGG  1132