BAC Information

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BAC

Clone NameB6Ng01-046G09
Chromosome1 (Build37)
Map Location 189,899,926 - 190,039,761
singlet/doubletdoublet
Overlap geneEsrrg
Upstream geneSpata17, Gpatch2, 9330162B11Rik
Downstream geneUsh2a, Kctd3, Kcnk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046G09.bB6Ng01-046G09.g
ACCDH871576DH871577
length7581,011
definitionDH871576|Mus musculus domesticus DNA, BAC clone: B6Ng01-046G09, 5' end.DH871577|Mus musculus domesticus DNA, BAC clone: B6Ng01-046G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,039,005 - 190,039,761)(189,899,926 - 189,900,968)
sequence
gaattcaaacagggtatcccttcttaggtatgaatgctgcatttctgaaa
tttgacacacatatgtgaacaactcaaaagtaaaatttataaacatgaga
tactgtggtgggctcttgccctgcaatagacattaaaataaaaaaggtgg
actctgagctttctttttactaggtcctaaaaccagcagttctggctatt
ggtttttgtcactgttgtgcatctctggagaaccagtcacctcagaaagg
tgggccggcacactgacaaaacactctctagctaggcagaggaaataaag
acaggataggcagggacagcaagagagagcatgtgagtgcttcgtgatgg
ttccgggagagttcccggaaagctccaagtccaccccaagcagtgaggtc
aggagaaggttattagctgtcagcagcactctttagccttcctgaattcc
aagacagcctcctccccatgcatggatcagagggctctgccaagagttcc
cattcaggagagctggccagtggctgctctgtggactccctccactgaag
ccgggcactcctgagctccatgtgtgccagcctgggaacttgatttaatt
gtcgatagaaggaaataatagatacctctcacaggttttaatatgatctt
aaaataggggaaagttttctgttatgacattgacatagaggcgatgattt
tgagtaatgcacgatgatgtggggctgcttaagattaaatatgagctata
taaaggct
gaattctcctggaagggagtcagtgtacttgtattaggagagacatttga
actgaaagagtcccaatgtcatgtgagaattagacacaaatatcttttag
gggtccttgagatctctacataaactttagaatcatattttgttgtattt
attcttttttttttcctgctctggagatgaaacttatccaaggcatctga
catggtggcaagagctcgaccacagaactgtaccccagtcttgttaggaa
taattgattagctctaaggcatatgatgcaaaccagggatcctcaagatg
tgttttttttcccacaaatcccttttgaccagtccatgtctggttcagac
agtctgtgacactttatttcatccaaattcgaacagagaggaaattttca
ccttgtagcaaagtctccttttggtggggggcagtttctagaacttgaac
ttgagagacatattccatccaaatgaatccttgtggagaggaatatatgt
gcatgccctcttccttgggagtctgagggtctggccatgatgtgcagctg
ggatattcaaatcctctctatgccataaaggagaaatatttaaatactca
tattttagagatttgtctatgactggatataaaattccacatgagaaaat
ataatctgtgtacctgtgatcctcagaggctattatatatttaaatgtac
tttcttttaaaaaatcaatcaagtttaagtgagatggcatatgagcaata
ctacgaacacttccgagaatacttcctgtgtcacaggaagccagacagat
ggaatcccaggccttcttactcctgtcctttctgttcatcgcagtgtgtt
aaagccagtcctttactgctcgtccctactgctatttcactgtcagcatg
agtagacgctacgtgatctatagtacagcattattctctgatataaatat
ctcgatggtttgcccaggggcagggcactgttgacatttgccagatagag
aaagcagtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190039005_190039761
seq2: B6Ng01-046G09.b_42_798 (reverse)

seq1  GCCTTTATATAGCTCATATTTAATCTTAAGCAGCCCCACATCATCCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCTTTATATAGCTCATATTTAATCTTAAGCAGCCCCACATCATCGTGCA  50

seq1  TTACTCAAAATCATCGCCTCTATGTCAATGTCATAACAGAAAACTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAAATCATCGCCTCTATGTCAATGTCATAACAGAAAACTTTCCC  100

seq1  CTATTTTAAGATCATATTAAAACCTGTGAGAGGTATCTATTATTTCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAAGATCATATTAAAACCTGTGAGAGGTATCTATTATTTCCTTC  150

seq1  TATCGACAATTAAATCAAGTTCCCAGGCTGGCACACATGGAGCTCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGACAATTAAATCAAGTTCCCAGGCTGGCACACATGGAGCTCAGGAG  200

seq1  TGCCCGGCTTCAGTGGAGGGAGTCCACAGAGCAGCCACTGGCCAGCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGCTTCAGTGGAGGGAGTCCACAGAGCAGCCACTGGCCAGCTCTC  250

seq1  CTGAATGGGAACTCTTGGCAGAGCCCTCTGATCCATGCATGGGGAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGGAACTCTTGGCAGAGCCCTCTGATCCATGCATGGGGAGGAGG  300

seq1  CTGTCTTGGAATTCAGGAAGGCTAAAGAGTGCTGCTGACAGCTAATAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGGAATTCAGGAAGGCTAAAGAGTGCTGCTGACAGCTAATAACC  350

seq1  TTCTCCTGACCTCACTGCTTGGGGTGGACTTGGAGCTTTCCGGGAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGACCTCACTGCTTGGGGTGGACTTGGAGCTTTCCGGGAACTCT  400

seq1  CCCGGAACCATCACGAAGCACTCACATGCTCTCTCTTGCTGTCCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAACCATCACGAAGCACTCACATGCTCTCTCTTGCTGTCCCTGCCT  450

seq1  ATCCTGTCTTTATTTCCTCTGCCTAGCTAGAGAGTGTTTTGTCAGTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCTTTATTTCCTCTGCCTAGCTAGAGAGTGTTTTGTCAGTGTGC  500

seq1  CGGCCCACCTTTCTGAGGTGACTGGTTCTCCAGAGATGCACAACAGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCACCTTTCTGAGGTGACTGGTTCTCCAGAGATGCACAACAGTGAC  550

seq1  AAAAACCAATAGCCAGAACTGCTGGTTTTAGGACCTAGTAAAAAGAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAATAGCCAGAACTGCTGGTTTTAGGACCTAGTAAAAAGAAAGC  600

seq1  TCAGAGTCCACCTTTTTTATTTTAATGTCTATTGCAGGGCAAGAGCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCCACCTTTTTTATTTTAATGTCTATTGCAGGGCAAGAGCCCAC  650

seq1  CACAGTATCTCATGTTTATAAATTTTACTTTTGAGTTGTTCACATATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATCTCATGTTTATAAATTTTACTTTTGAGTTGTTCACATATGTG  700

seq1  TGTCAAATTTCAGAAATGCAGCATTCATACCTAAGAAGGGATACCCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATTTCAGAAATGCAGCATTCATACCTAAGAAGGGATACCCTGTT  750

seq1  TGAATTC  757
      |||||||
seq2  TGAATTC  757

seq1: chr1_189899926_189900968
seq2: B6Ng01-046G09.g_67_1077

seq1  GAATTCTCCTGGAAGGGAGTCAGTGTACTTGTATTAGGAGAGACATTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGGAAGGGAGTCAGTGTACTTGTATTAGGAGAGACATTTGA  50

seq1  ACTGAAAGAGTCCCAATGTCATGTGAGAATTAGACACAAATATCTTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGAGTCCCAATGTCATGTGAGAATTAGACACAAATATCTTTTAG  100

seq1  GGGTCCTTGAGATCTCTACATAAACTTTAGAATCATATTTTGTTGTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTTGAGATCTCTACATAAACTTTAGAATCATATTTTGTTGTATTT  150

seq1  ATTCTTTTTTTTTTCCTGCTCTGGAGATGAAACTTATCCAAGGCATCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTTTTTTCCTGCTCTGGAGATGAAACTTATCCAAGGCATCTGA  200

seq1  CATGGTGGCAAGAGCTCGACCACAGAACTGTACCCCAGTCTTGTTAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCAAGAGCTCGACCACAGAACTGTACCCCAGTCTTGTTAGGAA  250

seq1  TAATTGATTAGCTCTAAGGCATATGATGCAAACCAGGGATCCTCAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATTAGCTCTAAGGCATATGATGCAAACCAGGGATCCTCAAGATG  300

seq1  TGTTTTTTTTCCCACAAATCCCTTTTGACCAGTCCATGTCTGGTTCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTCCCACAAATCCCTTTTGACCAGTCCATGTCTGGTTCAGAC  350

seq1  AGTCTGTGACACTTTATTTCATCCAAATTCGAACAGAGAGGAAATTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGACACTTTATTTCATCCAAATTCGAACAGAGAGGAAATTTTCA  400

seq1  CCTTGTAGCAAAGTCTCCTTTTGGTGGGGGGCAGTTTCTAGAACTTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAGCAAAGTCTCCTTTTGGTGGGGGGCAGTTTCTAGAACTTGAAC  450

seq1  TTGAGAGACATATTCCATCCAAATGAATCCTTGTGGAGAGGAATATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGACATATTCCATCCAAATGAATCCTTGTGGAGAGGAATATATGT  500

seq1  GCATGCCCTCTTCCTTGGGAGTCTGAGGGTCTGGCCATGATGTGCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCTCTTCCTTGGGAGTCTGAGGGTCTGGCCATGATGTGCAGCTG  550

seq1  GGATATTCAAATCCTCTCTATGCCATAAAGGAGAAATATTTAAATACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTCAAATCCTCTCTATGCCATAAAGGAGAAATATTTAAATACTCA  600

seq1  TATTTTAGAGATTTGTCTATGACTGGATATAAAATTCCACATGAGAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAGATTTGTCTATGACTGGATATAAAATTCCACATGAGAAAAT  650

seq1  ATAATCTGTGTACCTGTGATCCTCAGAGGCTATTATATATTTAAATGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGTGTACCTGTGATCCTCAGAGGCTATTATATATTTAAATGTAC  700

seq1  TTTCTTTTAAAAAAATCAATCAAGTTTAAGTGAGATGGCATATGAGCAAT  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTT-AAAAAATCAATCAAGTTTAAGTGAGATGGCATATGAGCAAT  749

seq1  ACTACGAACACTTCCGAGAATACTTCCTGTGTCACAGGAAGCCAGACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTACGAACACTTCCGAGAATACTTCCTGTGTCACAGGAAGCCAGAC-AG  798

seq1  ATGGAATCCCAGGCCTTCTTACTCCTGTCCTTTCTGTTCATCGCAGTGTT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGGAATCCCAGGCCTTCTTACTCCTGTCCTTTCTGTTCATCGCAGTG-T  847

seq1  GTTAAAGCCAGTCCTTTACTGGCTCGTTCCCTACCTGCTATTTCCACTGT  900
      |||||||||||||||||||| ||||| |||||| ||||||||| ||||||
seq2  GTTAAAGCCAGTCCTTTACT-GCTCG-TCCCTA-CTGCTATTT-CACTGT  893

seq1  CAGCATGAAGTAGGACGCTAACGTGGATCTAATAGGTTACAGCATTATTC  950
      ||||||| |||| |||||| |||| ||||| ||||  |||||||||||| 
seq2  CAGCATG-AGTA-GACGCT-ACGT-GATCT-ATAG--TACAGCATTATT-  935

seq1  CTCTTGAATTATAAAATATCTCCGATGGGTTTTGCCCCAAGGGGGCAGGG  1000
      ||| |||  ||| |||||||| ||||||  |||||||    |||||| ||
seq2  CTC-TGA--TAT-AAATATCT-CGATGG--TTTGCCC---AGGGGCA-GG  974

seq1  GCACCTGTTTGACCATTTGCCCAGATAGAGAAAAGCCAGTCAA  1043
      ||| ||| |||| |||||| |||||||||||||   |||||||
seq2  GCA-CTG-TTGA-CATTTG-CCAGATAGAGAAA--GCAGTCAA  1011