BAC Information

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BAC

Clone NameB6Ng01-046I05
Chromosome1 (Build37)
Map Location 49,833,008 - 49,969,137
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046I05.bB6Ng01-046I05.g
ACCDH871650DH871651
length9331,124
definitionDH871650|Mus musculus domesticus DNA, BAC clone: B6Ng01-046I05, 5' end.DH871651|Mus musculus domesticus DNA, BAC clone: B6Ng01-046I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,833,008 - 49,833,671)(49,967,993 - 49,969,137)
sequence
gaattccagagaccatctccctgacctccattcattcatcccttgttgct
atgtttcagcacacatctcagacagatattctctgttcaaaaaagtctgc
cagtgaaccttctcactgttccctgagaaccagtccgcaaggttatccat
agtactgcaacagagcaacacacagcaaaatcagtccctaaaattccaca
gaggaaacagaaaccaaagaacaaaatagccacccaacaaagacaaaccc
aggaatcagcacctattcacctagatgtataatttctgcaaacacagatg
cctagatgccagcttaagaactcaataacaaccagaacaattatgtctca
tctagaacccagctatcctaccactataggtccttaaagagcaagttttg
gaaaaatatattccaactaaacggactgaagaaacaagctggtgtagcca
ttgtaatatcaaacaaaatagacttcaaaacaaaattaatcaaaaaaaaa
aaaagaggagaacactgcataatcatcaaaaaaaaaaaaaaaaacgcagc
aaataatgaatatgacatttaagttcttaacacctatgtaccaaggtcac
tcacttatgtaaagaaacactactacagcttaaatcatatactgatcttc
actgactgatggggagaactttaataaccatctaataccaatgtacagat
catccagtcaaaaactaaacagaggaatactagcgctaacagatgtttta
aaccaaatggacctggcagagactatagaacatatcacacaaacatacac
acacaaatataacttctcattccctcattgaactttctcaaaattgactg
catacttaaagactaatcaagtcacatgagtatagttaaactgacataat
tatctgcatttttataagactaccgcaggataa
gaattcaacgaagagcttaaggggtgtatatatatataaagattttagag
tgatgaaaggcaagggaggaaatatataattaatgttataatttcaagaa
ttgtatatattattctttatataattataaaaaataaacattacaaatat
ttcatttacatagtaaataagagagataagtaccttaatatcatgtatac
ctgttatgatttgaataaaattagcctccataggctcaaaggggctgcaa
ttatttgaaagcgttaggacaaccctgtacactgtgctccatttcctgac
tcatatctcttcttgctttcccagaggcctgcatacacaggaaaccacct
tagccctgcccctctaaccccctgccaggcaactacccccaaatgcatcc
ccaatatcagtagactgcactctataccctgagtcccatttcccactcca
aaactctgcttgctttctctgtggcctccaggtcccaggaacaccagtta
agcaaccccatcccaaacctctgtcaaaacttaactgagagcccgccaaa
aagtagtaaattacacaccattgcctgggctccatttgttgccacattac
tctgcctacattcttggagacctatcatattaagctaaaatacacgcatg
agccttaaaatgcatcctacccactaaacaccattttccaacccacaata
tcacctgatttcctggaggttaccaataccagggcttctaggtcataatt
atactagggaccttagaggcaacattggtactcacaaggccgaatacgcc
ttgcagtccataaccccccccccacccccccaggaaagactaagtcataa
gaacagcaggatactcaggccatcagacagaagaaaagagaaccaaatgg
gcagaggcatggggaagcaggagacatcctcaaaacacacttttcacaaa
gacgacttagaatcagcatctatactgtaaagaacacatggcctcagagc
atatcctcagtgctgaacttcggcccagaatgagagcaggataacacaac
taatgcccacggagctggtaagcatgttacctcgccactcgctagataac
tatgaaacgaacatagaagcttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49833008_49833671
seq2: B6Ng01-046I05.b_48_710

seq1  GAATTCCAGAGACCATCTCCCTGACCTCCATTCATTCATCCCTTGTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGACCATCTCCCTGACCTCCATTCATTCATCCCTTGTTGCT  50

seq1  ATGTTTCAGCACACATCTCAGACAGATATTCTCTGTTCAAAAAAGTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCAGCACACATCTCAGACAGATATTCTCTGTTCAAAAAAGTCTGC  100

seq1  CAGTGAACCTTCTCACTGTTCCCTGAGAACCAGTCCGCAAGGTTATCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACCTTCTCACTGTTCCCTGAGAACCAGTCCGCAAGGTTATCCAT  150

seq1  AGTACTGCAACAGAGCAACACACAGCAAAATCAGTCCCTAAAATTCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGCAACAGAGCAACACACAGCAAAATCAGTCCCTAAAATTCCACA  200

seq1  GAGGAAACAGAAACCAAAGAACAAAATAGCCACCCAACAAAGACAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAGAAACCAAAGAACAAAATAGCCACCCAACAAAGACAAACCC  250

seq1  AGGAATCAGCACCTATTCACCTAGATGTATAATTTCTGCAAACACAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCAGCACCTATTCACCTAGATGTATAATTTCTGCAAACACAGATG  300

seq1  CCTAGATGCCAGCTTAAGAACTCAATAACAACCAGAACAATTATGTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGCCAGCTTAAGAACTCAATAACAACCAGAACAATTATGTCTCA  350

seq1  TCTAGAACCCAGCTATCCTACCACTATAGGTCCTTAAAGAGCAAGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACCCAGCTATCCTACCACTATAGGTCCTTAAAGAGCAAGTTTTG  400

seq1  GAAAAATATATTCCAACTAAACGGACTGAAGAAACAAGCTGGTGTAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATATATTCCAACTAAACGGACTGAAGAAACAAGCTGGTGTAGCCA  450

seq1  TTGTAATATCAAACAAAATAGACTTCAAAACAAAATTAATCAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATATCAAACAAAATAGACTTCAAAACAAAATTAATCAAAAAAAAA  500

seq1  AAAAGAGGAGAACACTGCATAATCATCAAAAAAAAAAAAAAAAAACGCAG  550
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAAGAGGAGAACACTGCATAATCATC-AAAAAAAAAAAAAAAAACGCAG  549

seq1  CAAATAATGAATATGACATTTAAGTTCTTAACACCTATGTACCAAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATGAATATGACATTTAAGTTCTTAACACCTATGTACCAAGGTCA  599

seq1  CTCACTTATGTAAAGAAACACTACTACAGCTTAAATCATATACTGATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTATGTAAAGAAACACTACTACAGCTTAAATCATATACTGATCTT  649

seq1  CACTGACTGATGGG  664
      ||||||||||||||
seq2  CACTGACTGATGGG  663

seq1: chr1_49967993_49969137
seq2: B6Ng01-046I05.g_69_1192 (reverse)

seq1  ACAAGCTTTCTATGTTCTGGTTTTCATAGTTATCTAGGGCCGAGT-GCGA  49
      |||||| ||||||||||    ||||||||||||||||   ||||| ||||
seq2  ACAAGC-TTCTATGTTC---GTTTCATAGTTATCTAG---CGAGTGGCGA  43

seq1  GGT-ACATGGCCTTACCCAGCTCCGTGGGCATTAGTTGTTGTTATCCCTT  98
      ||| |||||  |||| |||||||||||||||||||||| ||||||||  |
seq2  GGTAACATG--CTTA-CCAGCTCCGTGGGCATTAGTTG-TGTTATCC--T  87

seq1  GCTCTCATTCTGGGGCCGAGGTACAGCACTGAGGATAATGCCTTCTGAGG  148
      ||||||||||| ||||||| || ||||||||||||| ||||  |||||||
seq2  GCTCTCATTCT-GGGCCGAAGTTCAGCACTGAGGAT-ATGC--TCTGAGG  133

seq1  CCATGTGTTCTTTACAGTATAGATGCTGATTTCTAAGTTCGTCTTTGTTG  198
      ||||||||||||||||||||||||||||| ||||||| ||||||||||  
seq2  CCATGTGTTCTTTACAGTATAGATGCTGA-TTCTAAG-TCGTCTTTGTGA  181

seq1  AAAGTGTGTTTTGAGGATGTCTCCCTGCTTCCCCATGCCTCTGCCCCTTT  248
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  AAAGTGTGTTTTGAGGATGTCT-CCTGCTTCCCCATGCCTCTGCCCATTT  230

seq1  GGTTTCTCTTTTCTTCTGTCTGATGGCCTGAGTATCCTGCTGTTCTTATG  298
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-TTCTCTTTTCTTCTGTCTGATGGCCTGAGTATCCTGCTGTTCTTATG  279

seq1  ACTTAGTCTTTCCCTGGGGGGGGGGGGGGGGGGTTATGGACTGCAAGGCC  348
      ||||||||||| |||||||||| ||||||||||||||||||||||||| |
seq2  ACTTAGTCTTT-CCTGGGGGGGTGGGGGGGGGGTTATGGACTGCAAGG-C  327

seq1  GTATTCGGCCTTGTGAGTACCAATGTTGCCTCTAAGGTCCCTAGTATAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCGGCCTTGTGAGTACCAATGTTGCCTCTAAGGTCCCTAGTATAAT  377

seq1  TATGACCTAGAAGCCCTGGTATTGGTAACCTCCAGGAAATCAGGTGATAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTAGAAGCCCTGGTATTGGTAACCTCCAGGAAATCAGGTGATAT  427

seq1  TGTGGGTTGGAAAATGGTGTTTAGTGGGTAGGATGCATTTTAAGGCTCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTGGAAAATGGTGTTTAGTGGGTAGGATGCATTTTAAGGCTCAT  477

seq1  GCGTGTATTTTAGCTTAATATGATAGGTCTCCAAGAATGTAGGCAGAGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTATTTTAGCTTAATATGATAGGTCTCCAAGAATGTAGGCAGAGTA  527

seq1  ATGTGGCAACAAATGGAGCCCAGGCAATGGTGTGTAATTTACTACTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAACAAATGGAGCCCAGGCAATGGTGTGTAATTTACTACTTTTT  577

seq1  GGCGGGCTCTCAGTTAAGTTTTGACAGAGGTTTGGGATGGGGTTGCTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGCTCTCAGTTAAGTTTTGACAGAGGTTTGGGATGGGGTTGCTTAA  627

seq1  CTGGTGTTCCTGGGACCTGGAGGCCACAGAGAAAGCAAGCAGAGTTTTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTCCTGGGACCTGGAGGCCACAGAGAAAGCAAGCAGAGTTTTGG  677

seq1  AGTGGGAAATGGGACTCAGGGTATAGAGTGCAGTCTACTGATATTGGGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAATGGGACTCAGGGTATAGAGTGCAGTCTACTGATATTGGGGA  727

seq1  TGCATTTGGGGGTAGTTGCCTGGCAGGGGGTTAGAGGGGCAGGGCTAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGGGGGTAGTTGCCTGGCAGGGGGTTAGAGGGGCAGGGCTAAGG  777

seq1  TGGTTTCCTGTGTATGCAGGCCTCTGGGAAAGCAAGAAGAGATATGAGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCTGTGTATGCAGGCCTCTGGGAAAGCAAGAAGAGATATGAGTC  827

seq1  AGGAAATGGAGCACAGTGTACAGGGTTGTCCTAACGCTTTCAAATAATTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGAGCACAGTGTACAGGGTTGTCCTAACGCTTTCAAATAATTG  877

seq1  CAGCCCCTTTGAGCCTATGGAGGCTAATTTTATTCAAATCATAACAGGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTTTGAGCCTATGGAGGCTAATTTTATTCAAATCATAACAGGTA  927

seq1  TACATGATATTAAGGTACTTATCTCTCTTATTTACTATGTAAATGAAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATATTAAGGTACTTATCTCTCTTATTTACTATGTAAATGAAATA  977

seq1  TTTGTAATGTTTATTTTTTATAATTATATAAAGAATAATATATACAATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATGTTTATTTTTTATAATTATATAAAGAATAATATATACAATTC  1027

seq1  TTGAAATTATAACATTAATTATATATTTCCTCCCTTGCCTTTCATCACTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTATAACATTAATTATATATTTCCTCCCTTGCCTTTCATCACTC  1077

seq1  TAAAATCTTTATATATATATACACCCCTTAAGCTCTTCGTTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTTTATATATATATACACCCCTTAAGCTCTTCGTTGAATTC  1124