BAC Information

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BAC

Clone NameB6Ng01-047F04
Chromosome1 (Build37)
Map Location 82,372,025 - 82,437,409
singlet/doubletdoublet
Overlap geneRhbdd1
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneCol4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047F04.bB6Ng01-047F04.g
ACCDH872219DH872220
length1,128529
definitionDH872219|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F04, 5' end.DH872220|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,372,025 - 82,373,194)(82,436,876 - 82,437,409)
sequence
gaattcaaggcagaaatccaagctcctttttaaccttcctttttgatatc
ctgcgagattaacatatttatattctttcctgtggagtgattggatttct
tcaaagacagcactacagagggcccaggtggccaggctaatggtcatcta
agcatctttgatgcgagcgaatgtatctcttgcaagtagtgatttattct
tagcatggccaccttcatctgagaaactccttagaggtcaaagaatgttt
ttaaagctgttaccaatctttctaatctgtgtcattttccttgatctctt
tggtatgaaatcctggaatgtgtacaaggaccagatggaacagttaacag
agtaatgataaccagaaaagttctttgggtttttgttttgttttgttttt
tattacaaagccaaagtatataacttaaaaagtattcatcacaagatata
atttaaacttatttatccttagcactggttgttagattcctctgtccttg
attattataaagacttcaatacatctgattgggctattagaagaacagtt
gttgaaacgtgttgtttctcagggacccattatcatattagatatggcat
tttgggtcttttaattaatttttgattgacagcacaggaccgttagcata
ccttcccacttaaagcaccatggttttcttccttctttgtcccagctttt
gtctttcaagtatcaagttaagattttataatattcatatggtcagagct
gtcaattcatttcattaaagcattgctagactgtagaaatctacaggcac
atgttgtatctgaatgcagagtgctgaagagcttccggtcatctgagttt
tgccagttatgaaaacttcccttttagtcctggatatagaggacagggag
atggaggaaatgaagagaagctcactaaaacaaagtacatatacaatgct
ataagagcctttgtatcatataaactaaatattttttgcagaagtcatac
atatcatgattttataatataaatcaaagtaattcaaatagcttgttcta
gattctgatgtgatcacctcacagttctggctttgtgagttactaccgca
tgttccacgtaggtgcatgagatacatg
ttaattgcacttatgaacacaggccaatcagtctttgacagcgcactgca
catggaaaaggacccagaatgagctgtgggagaatcgggagcagcttcaa
cgtggcagagctgccaccaggccataggccacaaaccagagcaagtggga
agttcttcaaggaaaccagtgttctctgttgtatttctatgggaggatcc
ataattgcctttgggaggactaatgttttcatgacagaaagaagaagcaa
agagttagcgggcagaggatgagggttccacaggtgcagtgccctcccct
cccctcccctcccctccccttccctctccccctctctctagactcatttg
cagggcattcaaggataaccaaggcttagccaacagaagaaatgtcacac
actgactagagaactcccaaccctatccactcagaggtatgaaagtcact
ccattttatttatagagccctttcaagggctcgtgtttcactcagctttt
gttcccaatcttgtcattccagttccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82372025_82373194
seq2: B6Ng01-047F04.b_43_1170

seq1  GAATTCAAGGCAGAAATCCAAGCTCCTTTTTAACCTTCCTTTTTGATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCAGAAATCCAAGCTCCTTTTTAACCTTCCTTTTTGATATC  50

seq1  CTGCGAGATTAACATATTTATATTCTTTCCTGTGGAGTGATTGGATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAGATTAACATATTTATATTCTTTCCTGTGGAGTGATTGGATTTCT  100

seq1  TCAAAGACAGCACTACAGAGGGCCCAGGTGGCCAGGCTAATGGTCATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACAGCACTACAGAGGGCCCAGGTGGCCAGGCTAATGGTCATCTA  150

seq1  AGCATCTTTGATGCGAGCGAATGTATCTCTTGCAAGTAGTGATTTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTTGATGCGAGCGAATGTATCTCTTGCAAGTAGTGATTTATTCT  200

seq1  TAGCATGGCCACCTTCATCTGAGAAACTCCTTAGAGGTCAAAGAATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGGCCACCTTCATCTGAGAAACTCCTTAGAGGTCAAAGAATGTTT  250

seq1  TTAAAGCTGTTACCAATCTTTCTAATCTGTGTCATTTTCCTTGATCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTGTTACCAATCTTTCTAATCTGTGTCATTTTCCTTGATCTCTT  300

seq1  TGGTATGAAATCCTGGAATGTGTACAAGGACCAGATGGAACAGTTAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGAAATCCTGGAATGTGTACAAGGACCAGATGGAACAGTTAACAG  350

seq1  AGTAATGATAACCAGAAAAGTTCTTTGGGTTTTTGTTTTGTTTTGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGATAACCAGAAAAGTTCTTTGGGTTTTTGTTTTGTTTTGTTTTT  400

seq1  TATTACAAAGCCAAAGTATATAACTTAAAAAGTATTCATCACAAGATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAAGCCAAAGTATATAACTTAAAAAGTATTCATCACAAGATATA  450

seq1  ATTTAAACTTATTTATCCTTAGCACTGGTTGTTAGATTCCTCTGTCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACTTATTTATCCTTAGCACTGGTTGTTAGATTCCTCTGTCCTTG  500

seq1  ATTATTATAAAGACTTCAATACATCTGATTGGGCTATTAGAAGAACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATAAAGACTTCAATACATCTGATTGGGCTATTAGAAGAACAGTT  550

seq1  GTTGAAACGTGTTGTTTCTCAGGGACCCATTATCATATTAGATATGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAACGTGTTGTTTCTCAGGGACCCATTATCATATTAGATATGGCAT  600

seq1  TTTGGGTCTTTTAATTAATTTTTGATTGACAGCACAGGACCGTTAGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCTTTTAATTAATTTTTGATTGACAGCACAGGACCGTTAGCATA  650

seq1  CCTTCCCACTTAAAGCACCATGGTTTTCTTCCTTCTTTGTCCCAGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCACTTAAAGCACCATGGTTTTCTTCCTTCTTTGTCCCAGCTTTT  700

seq1  GTCTTTCAAGTATCAAGTTAAGATTTTATAATATTCATATGGTCAGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCAAGTATCAAGTTAAGATTTTATAATATTCATATGGTCAGAGCT  750

seq1  GTCAATTCATTTCATTAAAGCATTGCTAGACTGTAGAAATCTACAGGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCATTTCATTAAAGCATTGCTAGACTGTAGAAATCTACAGGCAC  800

seq1  ATGTTGTATCTGAATGCAGGAGTGCTGAAGAGCTTCCGGTCATCTGAGTT  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGTTGTATCTGAATGCA-GAGTGCTGAAGAGCTTCCGGTCATCTGAGTT  849

seq1  TTGCCAGTTATGAAAACTTCCCTTTTAGTCCTGGATATAGAGGACAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGTTATGAAAACTTCCCTTTTAGTCCTGGATATAGAGGACAGGGA  899

seq1  GATGGAGGAAATGAAGAGAAGGCTCAACTAAAACAAAGTACATATACAAA  950
      |||||||||||||||||||| |||| ||||||||||||||||||||| ||
seq2  GATGGAGGAAATGAAGAGAA-GCTC-ACTAAAACAAAGTACATATAC-AA  946

seq1  TGCTATAAAGAAGCCTTTGTATCATAATTAAAAACTAAATTAATTTTTTT  1000
      ||||||||   |||||||||||||    || |||||||||  ||||||| 
seq2  TGCTATAA--GAGCCTTTGTATCA----TATAAACTAAAT--ATTTTTT-  987

seq1  GCCAGAAAGTCATACATTATCAATGAATTTTTATAATAATAAATTCAAAA  1050
        ||| |||||||||| |||| ||||  ||||||||| ||||||   |||
seq2  -GCAG-AAGTCATACA-TATC-ATGA--TTTTATAAT-ATAAAT--CAAA  1028

seq1  GTAAATTTCAAAATAGCTTGTTCTAGATTTCTGAATGTGAAATTTCACTC  1100
      ||||  ||| ||||||||||||||||| ||||| ||||||    ||||  
seq2  GTAA--TTC-AAATAGCTTGTTCTAGA-TTCTG-ATGTGA----TCACCT  1069

seq1  AACCAAGTTCTGTGCTTTTGTGTAGTTTTACTACACGCATGTTCTACGTA  1150
       ||  ||||||| || |||||| ||  ||||||| ||||||||| |||||
seq2  CAC--AGTTCTG-GC-TTTGTG-AG--TTACTAC-CGCATGTTCCACGTA  1111

seq1  GGGTGCCATGAAGATACATG  1170
       |||| |||| |||||||||
seq2  -GGTG-CATG-AGATACATG  1128

seq1: chr1_82436876_82437409
seq2: B6Ng01-047F04.g_66_600 (reverse)

seq1  AGTGGAACTGGAATGACAAGATTGGGAACAAAAGCTGAGTGAAACACGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAACTGGAATGACAAGATTGGGAACAAAAGCTGAGTGAAACACGAG  50

seq1  CCCTTGAAAGGGCTCTATAAAT-AAATGGAGTGACTTTCATACCTCTGAG  99
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCTTGAAAGGGCTCTATAAATAAAATGGAGTGACTTTCATACCTCTGAG  100

seq1  TGGATAGGGTTGGGAGTTCTCTAGTCAGTGTGTGACATTTCTTCTGTTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGGGTTGGGAGTTCTCTAGTCAGTGTGTGACATTTCTTCTGTTGG  150

seq1  CTAAGCCTTGGTTATCCTTGAATGCCCTGCAAATGAGTCTAGAGAGAGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTTGGTTATCCTTGAATGCCCTGCAAATGAGTCTAGAGAGAGGG  200

seq1  GGAGAGGGAAGGGGAGGGGAGGGGAGGGGAGGGGAGGGCACTGCACCTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAAGGGGAGGGGAGGGGAGGGGAGGGGAGGGCACTGCACCTGT  250

seq1  GGAACCCTCATCCTCTGCCCGCTAACTCTTTGCTTCTTCTTTCTGTCATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTCATCCTCTGCCCGCTAACTCTTTGCTTCTTCTTTCTGTCATG  300

seq1  AAAACATTAGTCCTCCCAAAGGCAATTATGGATCCTCCCATAGAAATACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTAGTCCTCCCAAAGGCAATTATGGATCCTCCCATAGAAATACA  350

seq1  ACAGAGAACACTGGTTTCCTTGAAGAACTTCCCACTTGCTCTGGTTTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAACACTGGTTTCCTTGAAGAACTTCCCACTTGCTCTGGTTTGTG  400

seq1  GCCTATGGCCTGGTGGCAGCTCTGCCACGTTGAAGCTGCTCCCGATTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGGCCTGGTGGCAGCTCTGCCACGTTGAAGCTGCTCCCGATTCTC  450

seq1  CCACAGCTCATTCTGGGTCCTTTTCCATGTGCAGTGCGCTGTCAAAGACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTCATTCTGGGTCCTTTTCCATGTGCAGTGCGCTGTCAAAGACT  500

seq1  GATTGGCCTGTGTTCATAAGTGCAATTAAGAATTC  534
      |||||||||||||||||||||||||||||||||||
seq2  GATTGGCCTGTGTTCATAAGTGCAATTAAGAATTC  535