BAC Information

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BAC

Clone NameB6Ng01-048L03
Chromosome4 (Build37)1 (Build37)
Map Location 35,610,406 - 35,610,92211,942,409 - 11,943,271
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L03.bB6Ng01-048L03.g
ACCDH873180DH873181
length659867
definitionDH873180|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L03, 5' end.DH873181|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,610,406 - 35,610,922)(11,942,409 - 11,943,271)
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
atagccaacatcaaagtaaatggagagaagttggaagcaatcccactaaa
atcagggactagacaaagctgcccacttactccctaccttttcaacatag
tacttgaagtattagccagagcaatttgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctatcagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactaaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaggtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggataaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaatttctt
caacgaatt
gaattcaatgcaatgcacagagcttctgattcaacattctgaagaaccgc
tgtagaccttgacatctggagttaatttacttagtgtctttggattataa
tctgtaagatccaaacatacatgtgcactgtagacatgagtttgtttaca
ctgtagcttagaatttgttagtaaaagataataaaaagtaaatctcccta
accaagtgctcggctggcttagaatcaaaacatataaagatttcccttca
gttgttccaaagtatctttctaacaggtgtgtatttaagaacaaaaataa
gcaaacaaaaaagccatttgaactgaaatcccgttttaaagcaatgcaat
tagaaatgtgtacccactgcaaagatcctgagatttttttggaaaattcc
tttcataatgggtttgtcccaagagaaattaaataatttataactttacc
taggcattatttataaaacgctcaatcaaaaaccgggagttcctgctggg
gagatgaacttggtcccttgcacatttgtacgttcactggataaaaaata
aaaactctgagcaagatgctcagttcaaacaaacttttgccaattcgttt
ccttttcactgagaaagtaaatgctggtgatggactgtggaatcaccagg
ctggttgtacaaccacttacatggaatgcagtagacaagatgcaaagctt
cagaacttccaacttgctcgcattatagcaacctggttattagagccact
tcttgaaaaataattgctttgtccatgctttgagtccaactacaaagcag
gctaacattccatttttagatggtccttatttacacatagtcatatttca
atgctgatttaatccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35610406_35610922
seq2: B6Ng01-048L03.b_134_478 (reverse)

seq1  ATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAG  50

seq1  CCTGTTTATTCTTTGTGTAGAGAAAGGCCATTGACTTGTTTGAGTTAATT  100
      |||||||||||||||| |||||||||||||||||||||||| |||| |||
seq2  CCTGTTTATTCTTTGTATAGAGAAAGGCCATTGACTTGTTTTAGTTTATT  100

seq1  TTATATCCAGCTACTTCACTGAAGCTGTTTATCAGGTTTAGGAGTTCTCT  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTATATCCAGCTACTTCACCGAAGCTGTTTATCAGGTTTAGGAGTTCTCT  150

seq1  GGTAGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCAAAAA  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCAAAAA  200

seq1  GTTATATTTTGACTTCATCTTTTCCAATTTGTATCCCCTTGATCCCCTTT  250
      || ||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  GTGATATTTTGACTTCCTCTTTTCCAATTTGTATCCCCTTGATCTCCTTT  250

seq1  TGTTGTCAAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAATAGATA  300
      ||||||||||||||||||||||  ||||||||||| |||||||| || ||
seq2  TGTTGTCAAATTGCTCTGGCTAATACTTCAAGTACTATGTTGAAAAGGTA  300

seq1  GGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTTTTTTTTTTTTTT  350
      ||||| ||||||||||| |||||||||||||||||||  |    |     
seq2  GGGAGTAAGTGGGCAGCTTTGTCTAGTCCCTGATTTTAGTGGGAT-----  345

seq1  TTGGTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA  400
                                                        
seq2  --------------------------------------------------  345

seq1  ACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGCAATCTGCCTGCCTC  450
                                                        
seq2  --------------------------------------------------  345

seq1  TGCCTCCCGAGTGCTGGGATTAAAGGGTGTACCACCATGCCTGGCTAGTC  500
                                                        
seq2  --------------------------------------------------  345

seq1  CCTGATTTTAGTGGGAT  517
                       
seq2  -----------------  345

seq1: chr1_11942409_11943271
seq2: B6Ng01-048L03.g_66_932 (reverse)

seq1  TGGGATAAAATCAGCATTG-AATATGACTATGTGGTAATAAGAACCATCT  49
      |||||| |||||||||||| ||||||||||||||  |||||| |||||||
seq2  TGGGATTAAATCAGCATTGAAATATGACTATGTGTAAATAAGGACCATCT  50

seq1  AAAAAATGGAATGTTAGCCTGCTTTGTAGTTGGACTCAAAGCATGGAC-A  98
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  -AAAAATGGAATGTTAGCCTGCTTTGTAGTTGGACTCAAAGCATGGACAA  99

seq1  AGCAAATA-TTTTCAAG-AGTGGCTTCTAATAACCAGG-TGCTATAATGC  145
      ||||| || |||||||| |||||| ||||||||||||| |||||||||||
seq2  AGCAATTATTTTTCAAGAAGTGGC-TCTAATAACCAGGTTGCTATAATGC  148

seq1  GAGCAAGTTGGAGTTCCTGAAGCTCTGGCATCTTGTCTACTTGCATTCCA  195
      ||||||||||||  | |||||||| | ||||||||||||| |||||||||
seq2  GAGCAAGTTGGAAGTTCTGAAGCT-TTGCATCTTGTCTAC-TGCATTCCA  196

seq1  TGTATGTGGTTTGTACAA-CAG-CTGGTGATT-CACAGTTCTATCACCAG  242
      |||| |||| |||||||| ||| ||||||||| ||||| || ||||||||
seq2  TGTAAGTGG-TTGTACAACCAGCCTGGTGATTCCACAG-TCCATCACCAG  244

seq1  CATCTACTTTCTCAGTG-AAAGGAAACGAA-TGGCAAAAGTTTGTTTGAA  290
      ||| ||||||||||||| |||||||||||| |||||||||||||||||||
seq2  CATTTACTTTCTCAGTGAAAAGGAAACGAATTGGCAAAAGTTTGTTTGAA  294

seq1  CTGAGCATCTTGCTCAGAGTTTATATTTTATATCCAGTGAACGTACAAAT  340
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  CTGAGCATCTTGCTCAGAGTTTTTATTTTTTATCCAGTGAACGTACAAAT  344

seq1  GTGCAAGGGACCAAGTTCATCTCCCCAGCAGGAACTCCCGGTTTTTGATT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGGGACCAAGTTCATCTCCCCAGCAGGAACTCCCGGTTTTTGATT  394

seq1  GAGCGTTTTATAAATAATGCCTAGGTAAAGTTATAAATTATTTAATTTCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTTTTATAAATAATGCCTAGGTAAAGTTATAAATTATTTAATTTCT  444

seq1  CTTGGGACAAACCCATTATGAAAGGAATTTTCCAAAAAAATCTCAGGATC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACAAACCCATTATGAAAGGAATTTTCCAAAAAAATCTCAGGATC  494

seq1  TTTGCAGTGGGTACACATTTCTAATTGCATTGCTTTAAAACGGGATTTCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTGGGTACACATTTCTAATTGCATTGCTTTAAAACGGGATTTCA  544

seq1  GTTCAAATGGCTTTTTTGTTTGCTTATTTTTGTTCTTAAATACACACCTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATGGCTTTTTTGTTTGCTTATTTTTGTTCTTAAATACACACCTG  594

seq1  TTAGAAAGATACTTTGGAACAACTGAAGGGAAATCTTTATATGTTTTGAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGATACTTTGGAACAACTGAAGGGAAATCTTTATATGTTTTGAT  644

seq1  TCTAAGCCAGCCGAGCACTTGGTTAGGGAGATTTACTTTTTATTATCTTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCAGCCGAGCACTTGGTTAGGGAGATTTACTTTTTATTATCTTT  694

seq1  TACTAACAAATTCTAAGCTACAGTGTAAACAAACTCATGTCTACAGTGCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACAAATTCTAAGCTACAGTGTAAACAAACTCATGTCTACAGTGCA  744

seq1  CATGTATGTTTGGATCTTACAGATTATAATCCAAAGACACTAAGTAAATT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTTTGGATCTTACAGATTATAATCCAAAGACACTAAGTAAATT  794

seq1  AACTCCAGATGTCAAGGTCTACAGCGGTTCTTCAGAATGTTGAATCAGAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGATGTCAAGGTCTACAGCGGTTCTTCAGAATGTTGAATCAGAA  844

seq1  GCTCTGTGCATTGCATTGAATTC  863
      |||||||||||||||||||||||
seq2  GCTCTGTGCATTGCATTGAATTC  867