BAC Information

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BAC

Clone NameB6Ng01-048O07
Chromosome1 (Build37)
Map Location 140,891,541 - 141,055,483
singlet/doubletdoublet
Overlap geneDennd1b
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623
Downstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048O07.bB6Ng01-048O07.g
ACCDH873316DH873317
length4531,044
definitionDH873316|Mus musculus domesticus DNA, BAC clone: B6Ng01-048O07, 5' end.DH873317|Mus musculus domesticus DNA, BAC clone: B6Ng01-048O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,054,957 - 141,055,483)(140,891,541 - 140,892,612)
sequence
gaattcaattaagaattttgagacattaatgaatagataatgcatgagga
aatgaatcatagcaaaaaatggaaaatttaaaaacgaaccaagtggaact
catagaaaacaaaacaaaccatcctgatacagtagatgaaaatcagttcc
agacctcattagcagattcagcaccgatctgagacaggtcaaaagacatg
gccataactgaataaaacacacagagaaaagaaagcaaagcaagtgaaat
gaagaacattaacaagaaagtagggtgcagagcacccaaaagcagagcct
tgccagcagcagcgcgtgcagtgcattctgtttccatagaggagactctc
tggctccccagaactactcctctcctctctcctctcctctcctctcctct
cccctccccctccccctcccccttccctttctttcccttcctctccacct
ccc
gaattctacttcttgatctaaaggcagccgtcaggagactatcttatgag
gctggaactcctgggtgcacactgagtggagcttaagcctaggagacctc
aaagctcacagtgactcaccccctccaacaaggccacacctactttaaca
aggccacacctcctaatagttgtcactctgtgggccaggcattcaaacac
aggagtctttgggggccaaacctattcaaaccaccacagcctgttactac
agtattggccaagtagagacaggagaatgttgagggctggctgaatagcc
attcagtctgaatcagtgaactacaggttttgctgaaaaaaaaaaggtag
agagtgattgtgcattgcctcagcttgtagcttctgtgcgtgcacacata
caagggagctgaaatttatatttcagttttgatatgaggaagtgatgttt
ccattttgaaacactgtcatggttttgctattaaggagagaactatctgt
gtatcttgtgcattttctcatgttgctttctggaggggaaagtccatcca
tccatccatccatccatccatccatccatccatctatatgaacttgcagc
ctttgttctaaaagtaccaggggcacacagtgacactagagtccaagtta
tgctggtgtccagagccagctttgaagatcacattttttttttttctggt
cctttctccacctcctgtgtgttcgaggataatccctaaagctgtttttc
taaatcagctttcaaaactgtccattcagttttatctgtgttctaaagaa
taatggccaatctgctgggaatggaaatcctccaaacagaagcctgagag
atgtggaggctgagagcagctggtccatctggagggtgctactctgtata
gtatctagggcaccaagttcttcctcttgattttctctatattaagcttt
tctctgctgtgagtcaagcaggcactactctaagttcagtcatatgacag
cagagagtacttcagagaatttcttcggagtcagcaggcatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_141054957_141055483
seq2: B6Ng01-048O07.b_46_498 (reverse)

seq1  GGGAGGTGGAGAGAAAGAGAGAGGGGAGACCGAGGGAGGGAGGGAGGGAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGGGAAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGGGGAG  100
                         | |||  | ||||||||  ||| |   | | 
seq2  -------------------GGGAG--GTGGAGAGGAAGGGAAA---GAAA  26

seq1  GGGGAGGGGGAGGGGGAGGGGGAGGGGAGAGGAGAGGAGAGGAGAGGAGA  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGGGAGGGGGAGGGGGAGGGGAGAGGAGAGGAGAGGAGAGGAGA  76

seq1  GAGGAGAGGAGTAGTTCTGGGGAGCCAGAGAGTCTCCTCTATGGAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGAGTAGTTCTGGGGAGCCAGAGAGTCTCCTCTATGGAAACAG  126

seq1  AATGCACTGCACGCGCTGCTGCTGGCAAGGCTCTGCTTTTGGGTGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTGCACGCGCTGCTGCTGGCAAGGCTCTGCTTTTGGGTGCTCTG  176

seq1  CACCCTACTTTCTTGTTAATGTTCTTCATTTCACTTGCTTTGCTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTACTTTCTTGTTAATGTTCTTCATTTCACTTGCTTTGCTTTCTTT  226

seq1  TCTCTGTGTGTTTTATTCAGTTATGGCCATGTCTTTTGACCTGTCTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTGTTTTATTCAGTTATGGCCATGTCTTTTGACCTGTCTCAGA  276

seq1  TCGGTGCTGAATCTGCTAATGAGGTCTGGAACTGATTTTCATCTACTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGCTGAATCTGCTAATGAGGTCTGGAACTGATTTTCATCTACTGTA  326

seq1  TCAGGATGGTTTGTTTTGTTTTCTATGAGTTCCACTTGGTTCGTTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGGTTTGTTTTGTTTTCTATGAGTTCCACTTGGTTCGTTTTTAA  376

seq1  ATTTTCCATTTTTTGCTATGATTCATTTCCTCATGCATTATCTATTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATTTTTTGCTATGATTCATTTCCTCATGCATTATCTATTCATT  426

seq1  AATGTCTCAAAATTCTTAATTGAATTC  527
      |||||||||||||||||||||||||||
seq2  AATGTCTCAAAATTCTTAATTGAATTC  453

seq1: chr1_140891541_140892612
seq2: B6Ng01-048O07.g_69_1112

seq1  GAATTCTACTTCTTGATCTAAAGGCAGCCGTCAGGAGACTATCTTATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTCTTGATCTAAAGGCAGCCGTCAGGAGACTATCTTATGAG  50

seq1  GCTGGAACTCCTGGGTGCACACTGAGTGGAGCTTAAGCCTAGGAGACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAACTCCTGGGTGCACACTGAGTGGAGCTTAAGCCTAGGAGACCTC  100

seq1  AAAGCTCACAGTGACTCACCCCCTCCAACAAGGCCACACCTACTTTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCACAGTGACTCACCCCCTCCAACAAGGCCACACCTACTTTAACA  150

seq1  AGGCCACACCTCCTAATAGTTGTCACTCTGTGGGCCAGGCATTCAAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACACCTCCTAATAGTTGTCACTCTGTGGGCCAGGCATTCAAACAC  200

seq1  AGGAGTCTTTGGGGGCCAAACCTATTCAAACCACCACAGCCTGTTACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTTTGGGGGCCAAACCTATTCAAACCACCACAGCCTGTTACTAC  250

seq1  AGTATTGGCCAAGTAGAGACAGGAGAATGTTGAGGGCTGGCTGAATAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGGCCAAGTAGAGACAGGAGAATGTTGAGGGCTGGCTGAATAGCC  300

seq1  ATTCAGTCTGAATCAGTGAACTACAGGTTTTGCTGAAAAAAAAAAGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCTGAATCAGTGAACTACAGGTTTTGCTGAAAAAAAAAAGGTAG  350

seq1  AGAGTGATTGTGCATTGCCTCAGCTTGTAGCTTCTGTGCGTGCACACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATTGTGCATTGCCTCAGCTTGTAGCTTCTGTGCGTGCACACATA  400

seq1  CAAGGGAGCTGAAATTTATATTTCAGTTTTGATATGAGGAAGTGATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGCTGAAATTTATATTTCAGTTTTGATATGAGGAAGTGATGTTT  450

seq1  CCATTTTGAAACACTGTCATGGTTTTGCTATTAAGGAGAGAACTATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGAAACACTGTCATGGTTTTGCTATTAAGGAGAGAACTATCTGT  500

seq1  GTATCTTGTGCATTTTCTCATGTTGCTTTCTGGAGGGGAAAGTCCATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGTGCATTTTCTCATGTTGCTTTCTGGAGGGGAAAGTCCATCCA  550

seq1  TCCATCCATCCATCCATCCATCCATCCATCCATCTATATGAACTTGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATCCATCCATCCATCCATCCATCCATCTATATGAACTTGCAGC  600

seq1  CTTTGTTCTAAAAGTACCAGGGGCACACAGTGACACTAGAGTCCAAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTAAAAGTACCAGGGGCACACAGTGACACTAGAGTCCAAGTTA  650

seq1  TGCTGGTGTCCAGAGCCAGCTTTGAAGATCACA-TTTTTTTTTTTCTGGT  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCTGGTGTCCAGAGCCAGCTTTGAAGATCACATTTTTTTTTTTTCTGGT  700

seq1  CCTTTCTCCACCTCCTGTGTGTTCGAGGATAATCCCTAAAGCTGTTTTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCACCTCCTGTGTGTTCGAGGATAATCCCTAAAGCTGTTTTTC  750

seq1  TAAATCAGCTTTCAAAACTGTCCATTCAGTTTTAATCTGTGTTCTAAAGA  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAATCAGCTTTCAAAACTGTCCATTCAGTTTT-ATCTGTGTTCTAAAGA  799

seq1  ATAATGGCCAATCTGCTGGGAATGGAAATCCTCCAAACAGAAGCCTGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGCCAATCTGCTGGGAATGGAAATCCTCCAAACAGAAGCCTGAGA  849

seq1  GAATGTGGAGGCTGAGAAGCAGCTGGTCCATCTGGAGGGTGCTACTCTGT  899
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  G-ATGTGGAGGCTGAG-AGCAGCTGGTCCATCTGGAGGGTGCTACTCTGT  897

seq1  ATAGTTATCTAGGGCACCAAGTTTCTTTCCCCTTGATTTTCTCTTATTAT  949
      |||| ||||||||||||||||||   |||| |||||||||||||   |||
seq2  ATAG-TATCTAGGGCACCAAGTT--CTTCCTCTTGATTTTCTCT--ATAT  942

seq1  CTAGGCTTTTCTTCTTGGCTGTTGAGTCAAAGCCAAGGCACTAACTCTAA  999
       || ||||||| |||  |||| |||||| ||||  ||||||| |||||||
seq2  -TAAGCTTTTC-TCT--GCTG-TGAGTC-AAGC--AGGCACT-ACTCTAA  983

seq1  GTTCAAGTCATATGACAGGCAAGAGGAGTACTTCAGGGAGGAAATTTCTT  1049
      |||| |||||||||||||   ||| ||||||||||| |    ||||||||
seq2  GTTC-AGTCATATGACAG--CAGA-GAGTACTTCAGAG----AATTTCTT  1025

seq1  CGGAGGTCAGGCAGGGGCATCCT  1072
      |||| |||| |||  ||||||||
seq2  CGGA-GTCA-GCA--GGCATCCT  1044