BAC Information

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BAC

Clone NameB6Ng01-049N13
Chromosome1 (Build37)
Map Location 27,860,656 - 27,896,205
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC677427, LOC100040952
Downstream geneEG433281, EG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049N13.bB6Ng01-049N13.g
ACCDH873985DH873986
length1,1311,079
definitionDH873985|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N13, 5' end.DH873986|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,894,695 - 27,896,205)(27,860,656 - 27,861,752)
sequence
gaattccatataataagtcacagtaacatgaattatacttcttctttgac
catctatataactgcaaatgttatggatcgctcaagaagttcataaatat
ttcctgaagacaagaaggtcattacacatgtggaatcagtggcattgact
acttacataagacatgtatgaaattttgagattttgtcagtctcttttct
aatcattgctttcaaaatatatatttgtattggatatctggttttactct
acaggtactttgggtgatgaatcctgcctattttcactcacagttctacc
ttggcacatgttgtcccagacctaattctattctcaaagttctagatggg
aaataaagtgtgcacatgtgtttgtgtgtgtgtgtgtttgtgtatacttg
actcaacatctccactatgaattatttacagcctttgcttttttgctaag
atatcataaggtatcaatctaaggtatcactaagtatttgatgacatgtc
ataaatacttccgtcacagaacttataaaccttcagatttatgttaggta
taaaagtataaaaatgtgctatgtgtataaatgtctctgatatgcttgtg
tatgtgtctgtgtgtgcatctaggtgagtgtattatttggaaattgatca
gaaatatatagccattttgttaatagaaataaatatttactggtaaagat
aataaccttaatatttataaatattgttagaaccaggtatgtaaatttat
acccaactcttttatattgtggcctcaagttgataaagagagagatagag
agagaatagtttatttaataacaaccaatatgatactattatgtcttatt
tcacaaatatttttacatattgctgtaactgtatattgatactttaatgt
acaataaaaaaatctattagctactaaaggagcttcccttgatattatta
attgggaagttcagcatatcatccttttcaattgatatatgatcttgtgg
tttagcataccctctggtttacccctagatttgggaggcaccaacatacc
catatggcaccccacattccatggcatttttgtcaaggaaggaaacattg
ctgcgtggccaacctatccctctgtgcctgg
gaattcacttggacaactggatccttttacggcaaagctttcattgcttc
aacataaggaagaccccgaacctggaaaatggcactgcttatatagcctg
cagcgtgacgtttcagtacctgatgtggcgtgacagcacctgattagttg
cttgcccatcaccccattactacgccccaagatgggcagtgattgggttt
gaattcactcttgtacttgtgcataagtcttgtttactagttaggcgcag
tggaagtcagcaccatcttataatggcaattgctcacagcacggctctcc
acagtatattaataagatgtatatacagtacatgtatataatgcagttta
cacagatcttctctatgtcagttacttactagttaatcttagttacattt
ttagttactaagttttacttcctagtttttcagtgagttgggaggtcaca
accaaatccagagctgaggaagatggataatctcaatagcaaacttgctc
tggacaatcttttctctcacacttctaaagttggtgttataggctcaatt
ctatgctgcacatgtatgtgggttctgtacactcaaatcgaattttcagg
ctgagaggcttaagttttaatgttccagcactgccaaagctcctttataa
ctcttgtactttctctttcctgttttcttgataactctaatttaatttgt
ttttactctatgataaccacaatcctttcctttgtgccacagtataagca
acagagcaaaagcatgatcgcatagacatttaaaatttgatacttggact
tatttcttctgttattcctattacattgagcatgtttgtcagcatcttgt
tttcttgatcgaatcctttgtgaacgacagaatcccctggtccctgtaat
atttgcacatatatatttgatggtataaaaagtgtgatttgcatagtagt
tcaaagcatgtctgtttctactaaactatcaaaatatctcacactagtgc
atctcacaataaatttatcagtctcatgaaatcttaagaagaactagagt
taaatatggtagctttcagatcattgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_27894695_27896205
seq2: B6Ng01-049N13.b_45_1175 (reverse)

seq1  CCAGGCACATTTTCACTCTTGAGATAGTCTTACTGTATAGCTAACACTAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTTAGCTTGTTAGATAGTAACATTTGGCCTTTATATCATTAAAATTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGGTTTATACCCCTCCCAAGCAGTGGAATTGATAATCATAAGCTGCCC  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGGCTAACTATTTGTATGTTTTAATATAGTACATTTCAGATGTTTGCTGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AATGCTTACTAAGCCAAGTGAAATCCAGGTATTTTTTTGTTTTGTTTTGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTGTTTTGTTTTG  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTGTTTATTAGGTGTTGTTGATATTGTTCTAACAAAACATTATGCATT  350
                                                        
seq2  --------------------------------------------------  0

seq1  AAATGAAACATATTAAGTAAAGTGTGATCAAGCACAGA-GGATAGGTTTG  399
                                  || ||||||| ||||||||| |
seq2  ---------------------------CCAGGCACAGAGGGATAGGTTGG  23

seq1  TCACGCAGCAATGTTTCTTTCTTTGACAAAAATTGCATGTGAATGTGGGT  449
       |||||||||||||||| ||| |||||||||||  |||| ||||||||| 
seq2  CCACGCAGCAATGTTTCCTTCCTTGACAAAAATGCCATG-GAATGTGGG-  71

seq1  GTG-CATATGTGTATGTTTGTGTGCTCCATATCTAGGAGTAAAACCAGAG  498
      ||| |||||| ||||||| |||    ||| ||||||| || |||||||||
seq2  GTGCCATATGGGTATGTTGGTGCCTCCCAAATCTAGGGGT-AAACCAGAG  120

seq1  GGTATGCTAAA-CAC-AGATCATATAATCAATTTGAAAAAGGATGATATG  546
      ||||||||||| ||| ||||||||| |||||||   ||||||||||||||
seq2  GGTATGCTAAACCACAAGATCATAT-ATCAATT--GAAAAGGATGATATG  167

seq1  CTGAACTTTCTCAATTAATTAATATCAAGAGAAGCTTCTTTTAGTAGCTA  596
      |||||| ||| ||||||| |||||||||| ||||| || |||||||||||
seq2  CTGAAC-TTCCCAATTAA-TAATATCAAGGGAAGC-TCCTTTAGTAGCTA  214

seq1  ATAGA-TTTTTTATTGTACATT-AAGTATCAATATACAGTTACAGCAATA  644
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAGATTTTTTTATTGTACATTAAAGTATCAATATACAGTTACAGCAATA  264

seq1  TGTAAAAATATTTGTGAAATAAGACATAATAGTATCATATTGGTTGTTAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAATATTTGTGAAATAAGACATAATAGTATCATATTGGTTGTTAT  314

seq1  TAAATAAACTATTCTCTCTCTATCTCTCTCTTTATCAACTTGAGGCCACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAACTATTCTCTCTCTATCTCTCTCTTTATCAACTTGAGGCCACA  364

seq1  ATATAAAAGAGTTGGGTATAAATTTACATACCTGGTTCTAACAATATTTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAGAGTTGGGTATAAATTTACATACCTGGTTCTAACAATATTTA  414

seq1  TAAATATTAAGGTTATTATCTTTACCAGTAAATATTTATTTCTATTAACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTAAGGTTATTATCTTTACCAGTAAATATTTATTTCTATTAACA  464

seq1  AAATGGCTATATATTTCTGATCAATTTCCAAATAATACACTCACCTAGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTATATATTTCTGATCAATTTCCAAATAATACACTCACCTAGAT  514

seq1  GCACACACAGACACATACACAAGCATATCAGAGACATTTATACACATAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACAGACACATACACAAGCATATCAGAGACATTTATACACATAGC  564

seq1  ACATTTTTATACTTTTATACCTAACATAAATCTGAAGGTTTATAAGTTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTATACTTTTATACCTAACATAAATCTGAAGGTTTATAAGTTCT  614

seq1  GTGACGGAAGTATTTATGACATGTCATCAAATACTTAGTGATACCTTAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGGAAGTATTTATGACATGTCATCAAATACTTAGTGATACCTTAGA  664

seq1  TTGATACCTTATGATATCTTAGCAAAAAAGCAAAGGCTGTAAATAATTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACCTTATGATATCTTAGCAAAAAAGCAAAGGCTGTAAATAATTCA  714

seq1  TAGTGGAGATGTTGAGTCAAGTATACACAAACACACACACACACAAACAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGATGTTGAGTCAAGTATACACAAACACACACACACACAAACAC  764

seq1  ATGTGCACACTTTATTTCCCATCTAGAACTTTGAGAATAGAATTAGGTCT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACACTTTATTTCCCATCTAGAACTTTGAGAATAGAATTAGGTCT  814

seq1  GGGACAACATGTGCCAAGGTAGAACTGTGAGTGAAAATAGGCAGGATTCA  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAACATGTGCCAAGGTAGAACTGTGAGTGAAAATAGGCAGGATTCA  864

seq1  TCACCCAAAGTACCTGTAGAGTAAAACCAGATATCCAATACAAATATATA  1294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAAAGTACCTGTAGAGTAAAACCAGATATCCAATACAAATATATA  914

seq1  TTTTGAAAGCAATGATTAGAAAAGAGACTGACAAAATCTCAAAATTTCAT  1344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGCAATGATTAGAAAAGAGACTGACAAAATCTCAAAATTTCAT  964

seq1  ACATGTCTTATGTAAGTAGTCAATGCCACTGATTCCACATGTGTAATGAC  1394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTTATGTAAGTAGTCAATGCCACTGATTCCACATGTGTAATGAC  1014

seq1  CTTCTTGTCTTCAGGAAATATTTATGAACTTCTTGAGCGATCCATAACAT  1444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTCTTCAGGAAATATTTATGAACTTCTTGAGCGATCCATAACAT  1064

seq1  TTGCAGTTATATAGATGGTCAAAGAAGAAGTATAATTCATGTTACTGTGA  1494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTATATAGATGGTCAAAGAAGAAGTATAATTCATGTTACTGTGA  1114

seq1  CTTATTATATGGAATTC  1511
      |||||||||||||||||
seq2  CTTATTATATGGAATTC  1131

seq1: chr1_27860656_27861752
seq2: B6Ng01-049N13.g_70_1148

seq1  GAATTCACTTGGACAACTGGATCCTTTTACGGCAAAGCTTTCATTGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGGACAACTGGATCCTTTTACGGCAAAGCTTTCATTGCTTC  50

seq1  AACATAAGGAAGACCCCGAACCTGGAAAATGGCACTGCTTATATAGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGGAAGACCCCGAACCTGGAAAATGGCACTGCTTATATAGCCTG  100

seq1  CAGCGTGACGTTTCAGTACCTGATGTGGCGTGACAGCACCTGATTAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGACGTTTCAGTACCTGATGTGGCGTGACAGCACCTGATTAGTTG  150

seq1  CTTGCCCATCACCCCATTACTACGCCCCAAGATGGGCAGTGATTGGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCATCACCCCATTACTACGCCCCAAGATGGGCAGTGATTGGGTTT  200

seq1  GAATTCACTCTTGTACTTGTGCATAAGTCTTGTTTACTAGTTAGGCGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTGTACTTGTGCATAAGTCTTGTTTACTAGTTAGGCGCAG  250

seq1  TGGAAGTCAGCACCATCTTATAATGGCAATTGCTCACAGCACGGCTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCAGCACCATCTTATAATGGCAATTGCTCACAGCACGGCTCTCC  300

seq1  ACAGTATATTAATAAGATGTATATACAGTACATGTATATAATGCAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATATTAATAAGATGTATATACAGTACATGTATATAATGCAGTTTA  350

seq1  CACAGATCTTCTCTATGTCAGTTACTTACTAGTTAATCTTAGTTACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCTTCTCTATGTCAGTTACTTACTAGTTAATCTTAGTTACATTT  400

seq1  TTAGTTACTAAGTTTTACTTCCTAGTTTTTCAGTGAGTTGGGAGGTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACTAAGTTTTACTTCCTAGTTTTTCAGTGAGTTGGGAGGTCACA  450

seq1  ACCAAATCCAGAGCTGAGGAAGATGGATAATCTCAATAGCAAACTTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCCAGAGCTGAGGAAGATGGATAATCTCAATAGCAAACTTGCTC  500

seq1  TGGACAATCTTTTCTCTCACACTTCTAAAGTTGGTGTTATAGGCTCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATCTTTTCTCTCACACTTCTAAAGTTGGTGTTATAGGCTCAATT  550

seq1  CTATGCTGCACATGTATGTGGGTTCTGTACACTCAAATCGAATTTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGCACATGTATGTGGGTTCTGTACACTCAAATCGAATTTTCAGG  600

seq1  CTGAGAGGCTTAAGTTTTAATGTTCCAGCACTGCCAAAGCTCCTTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGCTTAAGTTTTAATGTTCCAGCACTGCCAAAGCTCCTTTATAA  650

seq1  CTCTTGTACTTTCTCTTTCCTGTTTTCTTGATAACTCTAATTTAATTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTACTTTCTCTTTCCTGTTTTCTTGATAACTCTAATTTAATTTGT  700

seq1  TTTTACTCTATGATAACCACAATCCTTTCCTTTGTGCCACAGTATAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCTATGATAACCACAATCCTTTCCTTTGTGCCACAGTATAAGCA  750

seq1  ACAGAGCAAAAAGCATGATCGCATAGACATTTAAAATTTGATACTTGGAC  800
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGC-AAAAGCATGATCGCATAGACATTTAAAATTTGATACTTGGAC  799

seq1  TTATTTCTTCTGTTATTCCTATTACATTGAGCATGTTTGTCAGCATCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTCTGTTATTCCTATTACATTGAGCATGTTTGTCAGCATCTTG  849

seq1  TTTTCTTGATCGAATCCTTTGTGAACGACAGAATCCCCTGGTCCCTGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTCTTGATCGAATCCTTTGTGAACGACAGAATCCCCTGGTCCCTG-TA  898

seq1  TTATTTGCACAATATATATTTGATGGTATAAAAAGGTGTGATTTGCATAG  950
       ||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  ATATTTGCAC-ATATATATTTGATGGTATAAAAA-GTGTGATTTGCATAG  946

seq1  TAGTTTCAAAAGCATGTTCTGTTTTCCTACTAAAACTATCAAAAATTATC  1000
      |||||   |||||||| |||||||  ||||| ||||||||||||  ||||
seq2  TAGTT--CAAAGCATG-TCTGTTT--CTACT-AAACTATCAAAA--TATC  988

seq1  TCACACTAGTGCATTCTCACAATAAAATTTTAATCAGGTCTTCATGAAAT  1050
      ||||||||||||| ||||||||||||   || |||| ||| |||||||||
seq2  TCACACTAGTGCA-TCTCACAATAAA---TTTATCA-GTC-TCATGAAAT  1032

seq1  CTT-AGAAGAACTAGAGTTAAAATATGGTAGCTTTCAGGATCA-TGCAG  1097
      ||| ||||||||||||||| ||||||||||||||||| ||||| |||||
seq2  CTTAAGAAGAACTAGAGTT-AAATATGGTAGCTTTCA-GATCATTGCAG  1079