BAC Information

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BAC

Clone NameB6Ng01-050C14
Chromosome1 (Build37)
Map Location 23,106,362 - 23,221,942
singlet/doubletdoublet
Overlap gene4933415F23Rik, Rn4.5s-ps4
Upstream geneLOC100040338, Rims1, Rims1, EG665725, LOC665731
Downstream geneEG623356, Ogfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050C14.bB6Ng01-050C14.g
ACCDH874196DH874197
length6361,063
definitionDH874196|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C14, 5' end.DH874197|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,221,307 - 23,221,942)(23,106,362 - 23,107,441)
sequence
gaattcctcaaagacagaagaaaaaaaaaaaaaaccctacaacttcaaag
gaatctaatgaaagaagtagtaaagatgtctgatgtctagggtacaagag
aagcagacccggggcttagtggagggggaaaaatgggcatgtatccaatg
agccattcattgcacatcccatccgggatttcagtcaaatcgaattctct
acaaattgagctgctgggcacacgccagcattgtgaggtggcttgagaaa
gaaactgatgctgtaaaaggtgtcttccacatcttccctgccacctgttt
taaggactgtgaggatcactcctttcatcaaaaggtttgcaagaaatgtc
aagagtttgtccttccctttctccacagctgagcatacaaatggaggaga
aaccctgccacccacaggattccaagaagatgagtgagtgctgagtgctg
cccggcacacggagacagtgggaggagggtggggcaggatatctcataaa
tgagcagagcaaagaaagggcaatgggggcggggacgggagcggcagact
gaccgaaatggtagaattcttaccaggaggcacagatccacctttacaaa
aagtcttcgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattcacatcactggattctatgtccacatgtctgctatgaagagacac
catgaccaagacaactcttataaggacaacattcaactggggctggctta
ctggttctgaggttcagtccattatcatcaaggcaggagcatgcttacca
tgttgtgttcaggcaggcatggtgtgaaaggagctgagcgttctgtatct
tgatctgactgcagccaggagaaactgactcttcctcatggggcagagct
tcaaagcccacccccacagtgatgtgcttcctccaacatggctacaccta
ctccaaaaggccatacctcgtaatgatgccaattcccttgggccaagcat
gttcaaaccaccacaccacactatacattgaatagctggaatgattttct
atgcctgtaaactgcttgtccaggcctgttcctgaccagatcttacacag
caggtgctcaggctggagggagggattggtgccaatggaagacagaatgt
gcacttatcatgaaacttaacaggtgttggagcctcatttgaaatgagtg
gaagatggatttcaaaagctgtcaacacaaggcccaataatcacctcaaa
ttacaaacatttagagagctctctgtcagctgagatgctcagatgtctcc
tgagtgccttttaggccccacttaatgacaaagcaaacatctctatatat
tcctttgctccaacaaaaagtgtataggggatgagaccagaatggggatt
ggaagttgatagtgaatatcttgaagggtatggtagttctggatggagtt
tttctttaccttttggtgtctagagaaaaataaagagaggctctatttct
ctgcttccaaagtcaagctccagatctgaacaccatgaatgtattatcta
ttagacataccaagtatttaatatcatggatctgtttacatgtttcggct
tataattttattttaaacaattgtaaatgtacatttttatactatcttcc
ttgtccccattcagtgaagaaatgagcaaagtacatatttgtaaaaaaga
gcagggggaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23221307_23221942
seq2: B6Ng01-050C14.b_47_682 (reverse)

seq1  ACACACACACACACACACACACACACACGAAGACTTTTTGTAAAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACGAAGACTTTTTGTAAAGGTGGA  50

seq1  TCTGTGCCTCCTGGTAAGAATTCTACCATTTCGGTCAGTCTGCCGCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCTCCTGGTAAGAATTCTACCATTTCGGTCAGTCTGCCGCTCCC  100

seq1  GTCCCCGCCCCCATTGCCCTTTCTTTGCTCTGCTCATTTATGAGATATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCGCCCCCATTGCCCTTTCTTTGCTCTGCTCATTTATGAGATATCC  150

seq1  TGCCCCACCCTCCTCCCACTGTCTCCGTGTGCCGGGCAGCACTCAGCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCACCCTCCTCCCACTGTCTCCGTGTGCCGGGCAGCACTCAGCACT  200

seq1  CACTCATCTTCTTGGAATCCTGTGGGTGGCAGGGTTTCTCCTCCATTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATCTTCTTGGAATCCTGTGGGTGGCAGGGTTTCTCCTCCATTTGT  250

seq1  ATGCTCAGCTGTGGAGAAAGGGAAGGACAAACTCTTGACATTTCTTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAGCTGTGGAGAAAGGGAAGGACAAACTCTTGACATTTCTTGCAA  300

seq1  ACCTTTTGATGAAAGGAGTGATCCTCACAGTCCTTAAAACAGGTGGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTGATGAAAGGAGTGATCCTCACAGTCCTTAAAACAGGTGGCAGG  350

seq1  GAAGATGTGGAAGACACCTTTTACAGCATCAGTTTCTTTCTCAAGCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTGGAAGACACCTTTTACAGCATCAGTTTCTTTCTCAAGCCACC  400

seq1  TCACAATGCTGGCGTGTGCCCAGCAGCTCAATTTGTAGAGAATTCGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGCTGGCGTGTGCCCAGCAGCTCAATTTGTAGAGAATTCGATTT  450

seq1  GACTGAAATCCCGGATGGGATGTGCAATGAATGGCTCATTGGATACATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAATCCCGGATGGGATGTGCAATGAATGGCTCATTGGATACATGC  500

seq1  CCATTTTTCCCCCTCCACTAAGCCCCGGGTCTGCTTCTCTTGTACCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTCCCCCTCCACTAAGCCCCGGGTCTGCTTCTCTTGTACCCTAG  550

seq1  ACATCAGACATCTTTACTACTTCTTTCATTAGATTCCTTTGAAGTTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGACATCTTTACTACTTCTTTCATTAGATTCCTTTGAAGTTGTAG  600

seq1  GGTTTTTTTTTTTTTTCTTCTGTCTTTGAGGAATTC  636
      ||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTTTTTCTTCTGTCTTTGAGGAATTC  636

seq1: chr1_23106362_23107441
seq2: B6Ng01-050C14.g_68_1130

seq1  GAATTCACATCACTGGATTCTATGTCCACATGTCTGCTATGAAGAGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCACTGGATTCTATGTCCACATGTCTGCTATGAAGAGACAC  50

seq1  CATGACCAAGACAACTCTTATAAGGACAACATTCAACTGGGGCTGGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAAGACAACTCTTATAAGGACAACATTCAACTGGGGCTGGCTTA  100

seq1  CTGGTTCTGAGGTTCAGTCCATTATCATCAAGGCAGGAGCATGCTTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTGAGGTTCAGTCCATTATCATCAAGGCAGGAGCATGCTTACCA  150

seq1  TGTTGTGTTCAGGCAGGCATGGTGTGAAAGGAGCTGAGCGTTCTGTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTCAGGCAGGCATGGTGTGAAAGGAGCTGAGCGTTCTGTATCT  200

seq1  TGATCTGACTGCAGCCAGGAGAAACTGACTCTTCCTCATGGGGCAGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGACTGCAGCCAGGAGAAACTGACTCTTCCTCATGGGGCAGAGCT  250

seq1  TCAAAGCCCACCCCCACAGTGATGTGCTTCCTCCAACATGGCTACACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCCACCCCCACAGTGATGTGCTTCCTCCAACATGGCTACACCTA  300

seq1  CTCCAAAAGGCCATACCTCGTAATGATGCCAATTCCCTTGGGCCAAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAAGGCCATACCTCGTAATGATGCCAATTCCCTTGGGCCAAGCAT  350

seq1  GTTCAAACCACCACACCACACTATACATTGAATAGCTGGAATGATTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACCACCACACCACACTATACATTGAATAGCTGGAATGATTTTCT  400

seq1  ATGCCTGTAAACTGCTTGTCCAGGCCTGTTCCTGACCAGATCTTACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTAAACTGCTTGTCCAGGCCTGTTCCTGACCAGATCTTACACAG  450

seq1  CAGGTGCTCAGGCTGGAGGGAGGGATTGGTGCCAATGGAAGACAGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTCAGGCTGGAGGGAGGGATTGGTGCCAATGGAAGACAGAATGT  500

seq1  GCACTTATCATGAAACTTAACAGGTGTTGGAGCCTCATTTGAAATGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTATCATGAAACTTAACAGGTGTTGGAGCCTCATTTGAAATGAGTG  550

seq1  GAAGATGGATTTCAAAAGCTGTCAACACAAGGCCCAATAATCACCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGATTTCAAAAGCTGTCAACACAAGGCCCAATAATCACCTCAAA  600

seq1  TTACAAACATTTAGAGAGCTCTCTGTCAGCTGAGATGCTCAGATGTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACATTTAGAGAGCTCTCTGTCAGCTGAGATGCTCAGATGTCTCC  650

seq1  TGAGTGCCTTTTAGGCCCCACTTAATGACAAAGCAAACATCTCTATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCCTTTTAGGCCCCACTTAATGACAAAGCAAACATCTCTATATAT  700

seq1  TCCTTTGCTCCAACAAAAAGTGTATAGGGGATGAGACCAGAATGGGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCTCCAACAAAAAGTGTATAGGGGATGAGACCAGAATGGGGATT  750

seq1  GGAAGTTGATAGTGAATATCTTGAAGGGTATGGTAGTTCTGGATGGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGATAGTGAATATCTTGAAGGGTATGGTAGTTCTGGATGGAGTT  800

seq1  TTTCTTTACCTTTTGGTGTCTAGAGAAAAATAAAAGAGAGGCTCTATTTC  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTCTTTACCTTTTGGTGTCTAGAGAAAAAT-AAAGAGAGGCTCTATTTC  849

seq1  TCTGCTTCCAAAGTCAAGGCTCCAGATCTGAACACCAATGAATGTAATTA  900
      ||||||||||||||||| |||||||||||||||||| |||||||| ||||
seq2  TCTGCTTCCAAAGTCAA-GCTCCAGATCTGAACACC-ATGAATGT-ATTA  896

seq1  TCTATTAGAACAATACCAAGTATTTAATATCATGGATCTTGTTTAACATG  950
      |||||||||   |||||||||||||||||||||||||| ||||| |||||
seq2  TCTATTAGA--CATACCAAGTATTTAATATCATGGATC-TGTTT-ACATG  942

seq1  TTTCGGCTTATTAATTTTATTTTTAAACAACTGTAAATGTACATTTTTAT  1000
      |||||||||| |||||||| |||||||||| |||||||||||||||||| 
seq2  TTTCGGCTTA-TAATTTTA-TTTTAAACAATTGTAAATGTACATTTTTA-  989

seq1  TACTATCTTCCTTGTCCCCATTCAGTGAAGAAAATGAGCCAAAAGTAACA  1050
      |||||||||||||||||||||||||||||| ||||||||  ||||| |||
seq2  TACTATCTTCCTTGTCCCCATTCAGTGAAG-AAATGAGC--AAAGT-ACA  1035

seq1  TATTTGTAAGAAAGAGGCAGGGGGGAAACA  1080
      ||||||||| ||||| ||| ||||||||||
seq2  TATTTGTAAAAAAGA-GCA-GGGGGAAACA  1063