BAC Information

Click to search

BAC

Clone NameB6Ng01-050E02
Chromosome1 (Build37)
Map Location 68,626,243 - 68,762,589
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842, EG241084, Ikzf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050E02.bB6Ng01-050E02.g
ACCDH874258DH874259
length1,1001,071
definitionDH874258|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E02, 5' end.DH874259|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,761,468 - 68,762,589)(68,626,243 - 68,627,342)
sequence
gaattccttataaatgtatcccaggagagagcttggcatataacaaataa
gccaggaagaacttcaataacattaatgttgtaagtgtgggaattacaca
ccagagttgttttgaatgttacatgcctctggtgcatagagaagcacaaa
gccaaatgtcatttgctttcagtgtcttaaaaaaaacacctagaattaga
actctcgagatcctactgaatttcattgtcagcctgattccttcaaggta
acaatcatggtgagtgggaatataatctataggcaaaaggtggttcctgt
taaaaaataacattacgtctgttgtgtgtgtagaacagaggaaagaaatt
gcagaagctttccatgggtttgagaattccatatagctttcagctttact
ttgtaatgtgcttaaatgaaagaaaaataatcaaaaatgctttctttcat
aagaatgtaaagctaatgactgacctttgtgagtggccatattttttctt
gaagagctctttatttaaggactaacaaatcttatttttcaattgtcaat
atctgactggattatgatatataactgtgagataacttccttagtttatt
ttttaggaaataagtggtttttcaattatctatctgataattaatgccct
acaatatactgacaacatgatttatcatgtaaaagcaatcaaattttata
ataataagaaaaaactcttccatgattatatgtaacaatatggtaaaggg
atatctatcatctttcccacctaatatataagaggaccaaagaacagcca
cattgtataccttgggtgacatctcaactcataggtgatcaagccaagat
tcaatgtagtgtcttagttggggtactgctggaaacagcactatgaccaa
gcagtcttataaaggacacatttaattggggctgacttacatgttccgag
gttcagtctaatcatcagcagaacatgtaaacatcaagcagatatggtgc
agcatagctgagagttctaatcttcattgaagtgactagtggagactggc
ttctagtaggcaggatgagtgtctaatcccacctcatgacacctactcca

gaattctattaactgtgttgaggctttgataatgaactacctaagaacct
tgggaaaccgtattggtaaacactttaagtaggagtggttggaatttata
taccacccttgaaatttacttttgagaaacttttcacacatacacacaaa
ctttgttacatgttgctggctaaaccctacattaattgctttaaataagt
tctgattctataatctgatacaatctctacacactaatattcaagaaaaa
gaaatagaaaaatcattcttggtgaggtttgcttcacagacaatgaccac
aaatctcttacagaaagtgttcatacatgaagagagaaataaaacaaaat
agctcatgggccttatgtttctgcaaaagtacacttttctagcactcaaa
tcaacatcaactgctgtaaattctaaccactagaatattattagtgctct
cagcagcctgcctaccactcagagccaagtgctctcctaagcatgtacta
ctgtagagctggtaccatgcttcctggtttacatagcacatcaaatttca
atgcagttacccttccttatattttctttaaatttccctcattgaatact
ggcagtatcattacttatttgtgagtgtccagcttatttcactatcattt
cagtattgccacaaaataatgtattaatagggacacaacataaatgaatg
gaacaatagacagcagagaagcatatgcagggattctgtgagctactaag
tgtaatccaaagagtgtctactattgctatcttcatatgtactgcatatt
ttactcaaaagacaaatgttttgctacagatgtcagatatatgaagttat
tttgccttctgaaatttttaaaaatatttgtaagtcatatttcatatatt
tttatactcatatatgtgtgtcacaaatgtatataacactagcatgggta
tagaaatatctttctgtagtgacagagtgtctcactgataagatcattca
tttttgtaaacgttactatcacaatatatttcagtcaaaatccaagtatc
atatatttttgaaatgctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_68761468_68762589
seq2: B6Ng01-050E02.b_44_1143 (reverse)

seq1  TGGAGTAGGTGTGTCATTGTAGGTGTGGGTTTAAGACACTCATCCTCGCT  50
      ||||||||  |||||||    |  ||||| || |||||||||||||  ||
seq2  TGGAGTAG--GTGTCAT----GAGGTGGGATT-AGACACTCATCCTGCCT  43

seq1  ACCTAGAAGCCAGTCTTCCACTAGTCAACTTCAAATGAAGATGTAGAACT  100
      | ||||||||||||| |||||||||| ||||| ||||||||| |||||||
seq2  A-CTAGAAGCCAGTC-TCCACTAGTC-ACTTC-AATGAAGAT-TAGAACT  88

seq1  CTCAGCTATGCCTGCACCATATCTGCCTTGATGTTTACATGTTCCTGCCT  150
      |||||||||| |||||||||||||| ||||||||||||||||| ||||  
seq2  CTCAGCTATG-CTGCACCATATCTG-CTTGATGTTTACATGTT-CTGC--  133

seq1  TGATGATTAGACTGAACCTCGGAACATGTAAGTCAGCCCCAATTAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGATGATTAGACTGAACCTCGGAACATGTAAGTCAGCCCCAATTAAATG-  182

seq1  TGTCCTTTATAAGACTTGCCTTGGTCATAGTGCCTGTTTCCAGCAGTACC  250
      ||||||||||||||||   ||||||||||||| |||||||||||||||||
seq2  TGTCCTTTATAAGACT--GCTTGGTCATAGTG-CTGTTTCCAGCAGTACC  229

seq1  CCAACTAAGACACCTACATTGAATCTTGGCTTGATCACCTATGAGTTGAG  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAACTAAGACA-CTACATTGAATCTTGGCTTGATCACCTATGAGTTGAG  278

seq1  ATGTCACCCAAGGTATACAATGTGGCTGTTCTTTGGTCCTCTTATATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCCAAGGTATACAATGTGGCTGTTCTTTGGTCCTCTTATATATT  328

seq1  AGGTGGGAAAGATGATAGATATCCCTTTACCATATTGTTACATATAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAAAGATGATAGATATCCCTTTACCATATTGTTACATATAATCA  378

seq1  TGGAAGAGTTTTTTCTTATTATTATAAAATTTGATTGCTTTTACATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGTTTTTTCTTATTATTATAAAATTTGATTGCTTTTACATGATA  428

seq1  AATCATGTTGTCAGTATATTGTAGGGCATTAATTATCAGATAGATAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTTGTCAGTATATTGTAGGGCATTAATTATCAGATAGATAATTG  478

seq1  AAAAACCACTTATTTCCTAAAAAATAAACTAAGGAAGTTATCTCACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCACTTATTTCCTAAAAAATAAACTAAGGAAGTTATCTCACAGTT  528

seq1  ATATATCATAATCCAGTCAGATATTGACAATTGAAAAATAAGATTTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCATAATCCAGTCAGATATTGACAATTGAAAAATAAGATTTGTTA  578

seq1  GTCCTTAAATAAAGAGCTCTTCAAGAAAAAATATGGCCACTCACAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAAATAAAGAGCTCTTCAAGAAAAAATATGGCCACTCACAAAGGT  628

seq1  CAGTCATTAGCTTTACATTCTTATGAAAGAAAGCATTTTTGATTATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTAGCTTTACATTCTTATGAAAGAAAGCATTTTTGATTATTTTT  678

seq1  CTTTCATTTAAGCACATTACAAAGTAAAGCTGAAAGCTATATGGAATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTAAGCACATTACAAAGTAAAGCTGAAAGCTATATGGAATTCT  728

seq1  CAAACCCATGGAAAGCTTCTGCAATTTCTTTCCTCTGTTCTACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCATGGAAAGCTTCTGCAATTTCTTTCCTCTGTTCTACACACACA  778

seq1  ACAGACGTAATGTTATTTTTTAACAGGAACCACCTTTTGCCTATAGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGTAATGTTATTTTTTAACAGGAACCACCTTTTGCCTATAGATTA  828

seq1  TATTCCCACTCACCATGATTGTTACCTTGAAGGAATCAGGCTGACAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCACTCACCATGATTGTTACCTTGAAGGAATCAGGCTGACAATGA  878

seq1  AATTCAGTAGGATCTCGAGAGTTCTAATTCTAGGTGTTTTTTTTAAGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTAGGATCTCGAGAGTTCTAATTCTAGGTGTTTTTTTTAAGACA  928

seq1  CTGAAAGCAAATGACATTTGGCTTTGTGCTTCTCTATGCACCAGAGGCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCAAATGACATTTGGCTTTGTGCTTCTCTATGCACCAGAGGCAT  978

seq1  GTAACATTCAAAACAACTCTGGTGTGTAATTCCCACACTTACAACATTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATTCAAAACAACTCTGGTGTGTAATTCCCACACTTACAACATTAA  1028

seq1  TGTTATTGAAGTTCTTCCTGGCTTATTTGTTATATGCCAAGCTCTCTCCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGAAGTTCTTCCTGGCTTATTTGTTATATGCCAAGCTCTCTCCT  1078

seq1  GGGATACATTTATAAGGAATTC  1122
      ||||||||||||||||||||||
seq2  GGGATACATTTATAAGGAATTC  1100

seq1: chr1_68626243_68627342
seq2: B6Ng01-050E02.g_67_1137

seq1  GAATTCTATTAACTGTGTTGAGGCTTTGATAATGAACTACCTAAGAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAACTGTGTTGAGGCTTTGATAATGAACTACCTAAGAACCT  50

seq1  TGGGAAACCGTATTGGTAAACACTTTAAGTAGGAGTGGTTGGAATTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACCGTATTGGTAAACACTTTAAGTAGGAGTGGTTGGAATTTATA  100

seq1  TACCACCCTTGAAATTTACTTTTGAGAAACTTTTCACACATACACACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCCTTGAAATTTACTTTTGAGAAACTTTTCACACATACACACAAA  150

seq1  CTTTGTTACATGTTGCTGGCTAAACCCTACATTAATTGCTTTAAATAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTACATGTTGCTGGCTAAACCCTACATTAATTGCTTTAAATAAGT  200

seq1  TCTGATTCTATAATCTGATACAATCTCTACACACTAATATTCAAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCTATAATCTGATACAATCTCTACACACTAATATTCAAGAAAAA  250

seq1  GAAATAGAAAAATCATTCTTGGTGAGGTTTGCTTCACAGACAATGACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAAAATCATTCTTGGTGAGGTTTGCTTCACAGACAATGACCAC  300

seq1  AAATCTCTTACAGAAAGTGTTCATACATGAAGAGAGAAATAAAACAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTTACAGAAAGTGTTCATACATGAAGAGAGAAATAAAACAAAAT  350

seq1  AGCTCATGGGCCTTATGTTTCTGCAAAAGTACACTTTTCTAGCACTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATGGGCCTTATGTTTCTGCAAAAGTACACTTTTCTAGCACTCAAA  400

seq1  TCAACATCAACTGCTGTAAATTCTAACCACTAGAATATTATTAGTGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCAACTGCTGTAAATTCTAACCACTAGAATATTATTAGTGCTCT  450

seq1  CAGCAGCCTGCCTACCACTCAGAGCCAAGTGCTCTCCTAAGCATGTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCTGCCTACCACTCAGAGCCAAGTGCTCTCCTAAGCATGTACTA  500

seq1  CTGTAGAGCTGGTACCATGCTTCCTGGTTTACATAGCACATCAAATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGCTGGTACCATGCTTCCTGGTTTACATAGCACATCAAATTTCA  550

seq1  ATGCAGTTACCCTTCCTTATATTTTCTTTAAATTTCCCTCATTGAATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTACCCTTCCTTATATTTTCTTTAAATTTCCCTCATTGAATACT  600

seq1  GGCAGTATCATTACTTATTTGTGAGTGTCCAGCTTATTTCACTATCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTATCATTACTTATTTGTGAGTGTCCAGCTTATTTCACTATCATTT  650

seq1  CAGTATTGCCACAAAATAATGTATTAATAGGGACACAACATAAATGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGCCACAAAATAATGTATTAATAGGGACACAACATAAATGAATG  700

seq1  GAACAATAGACAGCAGAGAAGCATATGCAGGGATTCTGTGAGCTACTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATAGACAGCAGAGAAGCATATGCAGGGATTCTGTGAGCTACTAAG  750

seq1  TGTAATCCAAAGAGTGTCTACTATTGCTATCTCCATATGTACTGCATATT  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTAATCCAAAGAGTGTCTACTATTGCTATCTTCATATGTACTGCATATT  800

seq1  TTACTCAAAAGACAAATG-TCTGCTACAGATGTCAGAATATATGAAGTTA  849
      |||||||||||||||||| | ||||||||||||||| |||||||||||||
seq2  TTACTCAAAAGACAAATGTTTTGCTACAGATGTCAG-ATATATGAAGTTA  849

seq1  -TTTGCCTTCTGAAAATTTTTAAAAAATAATTGTAAGTCATATTTCATAA  898
       ||||||||||||||  |||| ||||||| |||||||||||||||||| |
seq2  TTTTGCCTTCTGAAA--TTTTTAAAAATATTTGTAAGTCATATTTCAT-A  896

seq1  TATTTTTAATACTCATATATGTGTGTCAACAAAATTGTATTATAAACACT  948
      ||||||| ||||||||||||||||||| |||||  |||| ||| ||||||
seq2  TATTTTT-ATACTCATATATGTGTGTC-ACAAA--TGTA-TAT-AACACT  940

seq1  AGCATGGGTATAGAAAATATCTTTCTGTTAGTGACAAGAGGTGTCTCACT  998
      ||||||||||||| ||||||||||||| ||||||| ||| ||||||||||
seq2  AGCATGGGTATAG-AAATATCTTTCTG-TAGTGAC-AGA-GTGTCTCACT  986

seq1  GAATTAAAGATCATTCCATTTTGTATACCGTTAAACTATCACACATATAT  1048
      ||    ||||||||||  ||||||| | ||||  ||||||||| ||||||
seq2  GA---TAAGATCATTCATTTTTGTA-AACGTT--ACTATCACA-ATATAT  1029

seq1  TTTCAAGTCAATATTTCACAAGTATCATATTAATTTTTTTGAAAATGCTA  1098
      ||   |||||| ||    ||||||||||||  ||||||    ||||||||
seq2  TT--CAGTCAAAAT---CCAAGTATCATAT--ATTTTT---GAAATGCTA  1069

seq1  CT  1100
      ||
seq2  CT  1071