BAC Information

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BAC

Clone NameB6Ng01-050G02
Chromosome1 (Build37)
Map Location 59,537,749 - 59,666,694
singlet/doubletdoublet
Overlap geneFzd7, Gm973
Upstream geneOrc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7
Downstream geneSumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050G02.bB6Ng01-050G02.g
ACCDH874344DH874345
length987854
definitionDH874344|Mus musculus domesticus DNA, BAC clone: B6Ng01-050G02, 5' end.DH874345|Mus musculus domesticus DNA, BAC clone: B6Ng01-050G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,665,672 - 59,666,694)(59,537,749 - 59,538,614)
sequence
gaattcttgcttaaaatcctgaccaacctaggcctcatactcccaaaata
tattcttatcagatacccacaaagaatgacattaaatatcagtatagggc
tggagagatggctcagcggttaagagcattggctcctcttgcagaggtcc
tgggttctatttccagcaagcacatggtggctcacaaccatctgtaagta
gggttgcaggggatctgacgccctctgttggtctcctcaggcactgcatg
cacatgatacacagacgtacatgccggtaaaacacccatacacagaaaat
aaaaataaatacatttagaaataataaaatcagtataaaattatttttga
gtaggatgggaagaaacagtggaagataaacaggaaagatcaaaaccttc
cacttaaggaggcagagtcagtgttgtttcacagtttggtagtgaccaca
gagggaagatattaatttgctgcaatgtccaaattgaggttggtatttat
taagggacatcatttttttttttcgttcctcatcaccgcttaaagagtaa
agttcttttaccagtccctgaggcagaaaaggatgccaggcgtggagagg
tgaaggtgcttgtagcctgctacacagttcaggttcagtttagtagcaca
gacctgcagctgggcatgcattcgcttgtgactttaaaggggccaggaaa
gaaaaaaggcgccctctctgtgagtcacatggtttaggtttcagagccca
ggctggagttcagcccgcttgctccctctgctgtacattgtgtagcacat
aagcacatggcttctgtctggcctggaaccaccctagaatgtagtgggct
ggagagatggctcactggtagagcatggctctctcagagtctgagtcatc
cagcacacacgtgctcacacatctgtatggatctgatgccctgtgatgtg
ctgagatagcacagtgtactctatagaaatatcttga
gaattcatagtattcatgatatttcttgctggctcctgtgagagggcaga
ggccccttagtaacttctgaccggtcggggcaatcagacaacgcgcacga
gcgcccagtgcctggagcggggttaagatttgaccaagaacaaaagaaag
cttgccaatcagaaaatgctaccccacaaggaaaataacccctctttgtg
tctcgaaagccctttaattagcaaatgccctgctttctaacgcgcgttaa
aacatttctatgtagattccaaatggaaagatcaaatggttgcttctgca
acgaagaaggggtccctgaaggccacacacctcagaaaaaaaaaaggaaa
acggggcaaccgaaggcgctctgtaaatcgtacagagttccgaggccctc
ggtctcaggttactttcataagcattcccccagagctgccttggagttaa
aaaaaaaaaaaaaaaaaaaaaagagcctcttgggctccccaggctcccag
cagtatgtccgggaggggtggcaggctcgtgtgtgcagcggatccccagc
tctgggccttctcctccgagggtctgcacttcctcccgccacaagtccgc
ccctcggccgactcgggtttctccctccaggatgccccccttttttgtaa
ctgggggagggagagggaattgtgccttcacgtggtcggttggggtaggg
gaagaaaaacgattcttagtcgccacccttttcccgactcatactgatgc
taccaaattctccggcctcgcctgcaggcaagcttacgtgacttcggtca
cgtcttttggcctgtgctgtactatcctagcttctcccaaagcttcggca
atgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59665672_59666694
seq2: B6Ng01-050G02.b_43_1029 (reverse)

seq1  TCAAGATTATTTTCTGTATATGAGTACACTGTTGCTATCTTCAGCCACAT  50
      |||||||   ||||| ||   |||||||||| ||||||| |||| |||||
seq2  TCAAGAT--ATTTCTATA---GAGTACACTG-TGCTATC-TCAG-CACAT  42

seq1  CACAAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCGTGTGGTT  100
      ||| ||||||||||||||   ||||||||  |||||||   ||||||  |
seq2  CAC-AGGGCATCAGATCC--ATACAGATG--TGTGAGC--ACGTGTG--T  83

seq1  GCTGGGAATTGAACTCAGGACCTCTGGAAGAGAAGCCAATGCTCTTAACC  150
      |||||  ||   ||||||   |||||  |||| |||| |||||||  |||
seq2  GCTGG--AT--GACTCAG--ACTCTG--AGAG-AGCC-ATGCTCT--ACC  121

seq1  AGTGAGCCATCTCTCCAGCCCCACTTACATTTCTAAGGGTGGGTTCCAGG  200
      |||||||||||||||||| ||||| |||| |||| ||||| |||||||||
seq2  AGTGAGCCATCTCTCCAG-CCCAC-TACA-TTCT-AGGGT-GGTTCCAGG  166

seq1  CCAGACAGAAGCCATGTGCTTATTGTTGCTACACAATGTACAGCAGAGGG  250
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  CCAGACAGAAGCCATGTGCTTAT--GTGCTACACAATGTACAGCAGAGGG  214

seq1  AGCAAGCGGGCCTGAACTCCAGCCTGGGCTCTGAAACCTAAACCATGTGA  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCGGG-CTGAACTCCAGCCTGGGCTCTGAAACCTAAACCATGTGA  263

seq1  CTCACAGAGAGGGCGCCTTTTTTCTTTCCTGGCCCC-TTAAAGTCACAAG  349
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCACAGAGAGGGCGCCTTTTTTCTTTCCTGGCCCCTTTAAAGTCACAAG  313

seq1  CGAATGCATGCCCAGCTGCAGGTCTGTGCTACTAAACTGAACCTGAACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGCATGCCCAGCTGCAGGTCTGTGCTACTAAACTGAACCTGAACTG  363

seq1  TGTAGCAGGCTACAAGCACCTTCACCTCTCCACGCCTGGCATCCTTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGGCTACAAGCACCTTCACCTCTCCACGCCTGGCATCCTTTTCT  413

seq1  GCCTCAGGGACTGGTAAAAGAACTTTACTCTTTAAGCGGTGATGAGGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGGACTGGTAAAAGAACTTTACTCTTTAAGCGGTGATGAGGAAC  463

seq1  GAAAAAAAAAAATGATGTCCCTTAATAAATACCAACCTCAATTTGGACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAATGATGTCCCTTAATAAATACCAACCTCAATTTGGACAT  513

seq1  TGCAGCAAATTAATATCTTCCCTCTGTGGTCACTACCAAACTGTGAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAATTAATATCTTCCCTCTGTGGTCACTACCAAACTGTGAAACA  563

seq1  ACACTGACTCTGCCTCCTTAAGTGGAAGGTTTTGATCTTTCCTGTTTATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACTCTGCCTCCTTAAGTGGAAGGTTTTGATCTTTCCTGTTTATC  613

seq1  TTCCACTGTTTCTTCCCATCCTACTCAAAAATAATTTTATACTGATTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGTTTCTTCCCATCCTACTCAAAAATAATTTTATACTGATTTTA  663

seq1  TTATTTCTAAATGTATTTATTTTTATTTTCTGTGTATGGGTGTTTTACCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTAAATGTATTTATTTTTATTTTCTGTGTATGGGTGTTTTACCG  713

seq1  GCATGTACGTCTGTGTATCATGTGCATGCAGTGCCTGAGGAGACCAACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACGTCTGTGTATCATGTGCATGCAGTGCCTGAGGAGACCAACAG  763

seq1  AGGGCGTCAGATCCCCTGCAACCCTACTTACAGATGGTTGTGAGCCACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGTCAGATCCCCTGCAACCCTACTTACAGATGGTTGTGAGCCACCA  813

seq1  TGTGCTTGCTGGAAATAGAACCCAGGACCTCTGCAAGAGGAGCCAATGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGCTGGAAATAGAACCCAGGACCTCTGCAAGAGGAGCCAATGCT  863

seq1  CTTAACCGCTGAGCCATCTCTCCAGCCCTATACTGATATTTAATGTCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCGCTGAGCCATCTCTCCAGCCCTATACTGATATTTAATGTCATT  913

seq1  CTTTGTGGGTATCTGATAAGAATATATTTTGGGAGTATGAGGCCTAGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGGTATCTGATAAGAATATATTTTGGGAGTATGAGGCCTAGGTT  963

seq1  GGTCAGGATTTTAAGCAAGAATTC  1023
      ||||||||||||||||||||||||
seq2  GGTCAGGATTTTAAGCAAGAATTC  987

seq1: chr1_59537749_59538614
seq2: B6Ng01-050G02.g_68_921

seq1  GAATTCATAGTATTCATGATATTTCTTGCTGGCTCCTGTGAGAGGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTATTCATGATATTTCTTGCTGGCTCCTGTGAGAGGGCAGA  50

seq1  GGCCCCTTAGTAACTTCTGACCGGTCGGGGCAATCAGACAACGCGCACGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTAGTAACTTCTGACCGGTCGGGGCAATCAGACAACGCGCACGA  100

seq1  GCGCCCAGTGCCTGGAGCGGGGTTAAGATTTGACCAAGAACAAAAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCAGTGCCTGGAGCGGGGTTAAGATTTGACCAAGAACAAAAGAAAG  150

seq1  CTTGCCAATCAGAAAATGCTACCCCACAAGGAAAATAACCCCTCTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAATCAGAAAATGCTACCCCACAAGGAAAATAACCCCTCTTTGTG  200

seq1  TCTCGAAAGCCCTTTAATTAGCAAATGCCCTGCTTTCTAACGCGCGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAAAGCCCTTTAATTAGCAAATGCCCTGCTTTCTAACGCGCGTTAA  250

seq1  AACATTTCTATGTAGATTCCAAATGGAAAGATCAAATGGTTGCTTCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTATGTAGATTCCAAATGGAAAGATCAAATGGTTGCTTCTGCA  300

seq1  ACGAAGAAGGGGTCCCTGAAGGCCACACACCTCAGAAAAAAAAAAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGAAGGGGTCCCTGAAGGCCACACACCTCAGAAAAAAAAAAGGAAA  350

seq1  ACGGGGCAACCGAAGGCGCTCTGTAAATCGTACAGAGTTCCGAGGCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGCAACCGAAGGCGCTCTGTAAATCGTACAGAGTTCCGAGGCCCTC  400

seq1  GGTCTCAGGTTACTTTCATAAGCATTCCCCCAGAGCTGCCTTGGAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGGTTACTTTCATAAGCATTCCCCCAGAGCTGCCTTGGAGTTAA  450

seq1  AAAAAAAAAAAAAAAAAAAAAAGAGCCTCTTGGGCTCCCCAGGCTCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAGAGCCTCTTGGGCTCCCCAGGCTCCCAG  500

seq1  CAGTATGTCCGGGAGGGGTGGCAGGCTCGTGTGTGCAGCGGATCCCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTCCGGGAGGGGTGGCAGGCTCGTGTGTGCAGCGGATCCCCAGC  550

seq1  TCTGGGCCTTCTCCTCCGAGGGTCTGCACTTCCTCCCGCCACAAGTCCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCTTCTCCTCCGAGGGTCTGCACTTCCTCCCGCCACAAGTCCGC  600

seq1  CCCTCGGCCGACTCGGGTTTCTCCCTCCAGGATGCCCCCCTTTTTTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGCCGACTCGGGTTTCTCCCTCCAGGATGCCCCCCTTTTTTGTAA  650

seq1  CTGGGGGAGGGAGAGGGAATTGTGCCTTCACGTGGTCGGTTGGGGTAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGAGGGAGAGGGAATTGTGCCTTCACGTGGTCGGTTGGGGTAGGG  700

seq1  GAAGAAAAAACGATTCTTAGTCG-CACCCCTTTCTCGACTCATACTGATG  749
      |||| |||||||||||||||||| ||||| |||| |||||||||||||||
seq2  GAAG-AAAAACGATTCTTAGTCGCCACCCTTTTCCCGACTCATACTGATG  749

seq1  CTAACCAAAATTCTCCCGCCCTCGCCTGCCAGGCAAGGCTAACGTGACTC  799
      |||  | ||||||| ||| ||||||||| ||||||| ||| |||||||| 
seq2  CTA--CCAAATTCT-CCGGCCTCGCCTG-CAGGCAA-GCTTACGTGACTT  794

seq1  CGGGTCACGTCTTTCTGCCCTGGTGCTGTACTATTCTCAGCTTCTCCCCA  849
      | |||||||||||| || ||| |||||||||||| || ||||||| ||||
seq2  C-GGTCACGTCTTT-TGGCCT-GTGCTGTACTATCCT-AGCTTCT-CCCA  839

seq1  AAGCCTTCGGCGAATGC  866
      ||| ||||||| |||||
seq2  AAG-CTTCGGC-AATGC  854