BAC Information

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BAC

Clone NameB6Ng01-052C19
Chromosome5 (Build37)1 (Build37)
Map Location 139,058,822 - 139,059,95084,795,956 - 84,796,428
singlet/doubletsingletsinglet
Overlap geneZfp68
Upstream geneFbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, LOC665882
Downstream geneA430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052C19.bB6Ng01-052C19.g
ACCDH875606DH875607
length1,124887
definitionDH875606|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C19, 5' end.DH875607|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(139,058,822 - 139,059,950)(84,795,956 - 84,796,428)
sequence
gaattcagttcaatcaagaaccaactcattgccaagttgagcaaatgata
ttatttagaaaacataggtaaagaccaaaacaccacaacttagtaagtag
tagattattttacttatatgtaaatatgtttatttgtgtgattgtttgcc
attagcatgcagtaccttggaggccagaagagggcactggacccactgca
gctgctgtaacaagttgtgaggcatctgggaactgaacttgggtcctctg
gaaggctggctttattaagaatcaagtattcttaaatactgagccagttc
tcgagccctaagatttttatattacctaagactgacttacagagaagtca
acaaaagatgatggtttaaaaagtcacgggtttggccctgccctcacatt
gcatacacctgaagaacattaaagagtattcatttctaagtgggccagta
tagcgattcatatttcattgactcattgcaacttgaattttggagatttt
aagtctttctgggggttaggaatgggagttcagggttctagaaacatttt
caatgtgctacaagtattagttatattgcaggatcaatgtcaagtgtttg
agaacagctttgcttagtgaaagggaaagaacaaattcaggatacttagc
tgtatctttctccacattccaacaagacaaaatgctttgtagaatcatgt
cttcgggtcactttcacagtaaggtgttccatgcaccgtgatttgtattt
atctacagaaatcataagtgacctataagtactaaaagtgaagaaaatat
taattggtgtgcctgtgggagcattagccatgtttgcagatttctcctga
gatgagaagtcagaaacagactgttgctccttgatttcttgggttctgct
attagaacaagtgtccttttatggaggactgagaagaccagatcatgacc
ggatgagacttgttgttttagtgttgaccattgttttggtttgtcagttg
catttggttcaagtcccgggatccaagttttttttttatatttttttttt
attttcatttttagagatggagagctggtcttgcctactaagggtaccac
cctttaccacacataaaacagcgg
gaattctgcactaaacccatctgatcctgggcttatttttggtttgggga
cttttagtgacttctatttcaatttgggttataggactgtttaggtggat
tatctgatcctgatttaactttggtacttggtatctgtttagaaatttgc
ccatttcatccagatattccagttttgctgagtataggcttttgtagtag
gatctaatgattttttttttttttggatttcctcagtttctgttgttctc
ttttcatttctaattgtattcatttggaaactgcctctgtgccctatggt
tagtctagctaaaggtttatctatcttgttgattttctcaattaaccagc
tcctggtttggttggttctttgtatagttctttttgtttctacttggtta
atttcagccctgagtttgactactgcctcctactcctcttgggtgtattt
gcttctttttgttctagagctttcaggtgctattaagatgctagtgtacg
ctctccccagtttcattttggaggcactcagagctatgagttttcctctt
agcactgctttcattgtgtcccataagtttggctatgttctgccttcatt
tcattaaattttaaagtctttaatttctttatttcttctttgaccaagtt
atcactgagtaggctatttatttattcattcattcatcatcattcattca
atttgggttttcaagcaggtttctctgtgtagccctggctttctggaact
cgctctgtagaccaggctggcctagaactcaaattccacctgctctgcct
ccaaggcctggatgaagaatgggccctacgcctgtgagtagtgtacggct
tccatatgaatggctcagatttgttgttgttgtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_139058822_139059950
seq2: B6Ng01-052C19.b_48_1171 (reverse)

seq1  CCGCTGTTTGTAT-TGTGGTAAAGGTGTGTAACCTTTAAT-GGCTAAGCC  48
      ||||||||| ||| ||||||||||| |||  ||| ||| | ||| |  ||
seq2  CCGCTGTTT-TATGTGTGGTAAAGG-GTGGTACCCTTAGTAGGCAAGACC  48

seq1  AGCTCTCCAGTCCTTAAAAATGAAAAATAAAAAAAAAAAATTAAAAAAAA  98
      ||||||||| ||  |||||||| |||||||||||||||   || ||||||
seq2  AGCTCTCCA-TCTCTAAAAATG-AAAATAAAAAAAAAA---TATAAAAAA  93

seq1  AAAACTTGGAT-CCAGGACTTGAACCAAATGCAACCTGACAACCAAAACC  147
      ||||||||||| || ||||||||||||||||||| ||||||| | ||| |
seq2  AAAACTTGGATCCCGGGACTTGAACCAAATGCAA-CTGACAAACCAAAAC  142

seq1  AATGGTCACCACT-AAACAACAAGTCTCCTCCGGTCATTGATCTGGTCCT  196
      |||||||| |||| |||||||||||||| |||||||| ||||||||| ||
seq2  AATGGTCAACACTAAAACAACAAGTCTCATCCGGTCA-TGATCTGGT-CT  190

seq1  TCTCAGTCCTCCAT-AAAGGACACTTGTTCTAATAGCAGAACCCAAGAAA  245
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTCAGTCCTCCATAAAAGGACACTTGTTCTAATAGCAGAACCCAAGAAA  240

seq1  TCAAGGAGCAACAGTCTGTTTCTGACTTCTCATCTCAGGAGAAATCTGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAGCAACAGTCTGTTTCTGACTTCTCATCTCAGGAGAAATCTGCA  290

seq1  AACATGGCTAATGCTCCCACAGGCACACCAATTATTATTTTCTTCACTTT  345
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACATGGCTAATGCTCCCACAGGCACACCAATTAATATTTTCTTCACTTT  340

seq1  TAGTACTTATAGGTCACTTATGATTTCTGTAGATAAATACAAATCACGGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTATAGGTCACTTATGATTTCTGTAGATAAATACAAATCACGGT  390

seq1  GCATGGAACACCTTACTGTGAAAGTGACCCGAAGACATGATTCTACAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAACACCTTACTGTGAAAGTGACCCGAAGACATGATTCTACAAAG  440

seq1  CATTTTGTCTTGTTGGAATGTGGAGAAAGATACAGCTAAGTATCCTGAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTCTTGTTGGAATGTGGAGAAAGATACAGCTAAGTATCCTGAAT  490

seq1  TTGTTCTTTCCCTTTCACTAAGCAAAGCTGTTCTCAAACACTTGACATTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTCCCTTTCACTAAGCAAAGCTGTTCTCAAACACTTGACATTG  540

seq1  ATCCTGCAATATAACTAATACTTGTAGCACATTGAAAATGTTTCTAGAAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCAATATAACTAATACTTGTAGCACATTGAAAATGTTTCTAGAAC  590

seq1  CCTGAACTCCCATTCCTAACCCCCAGAAAGACTTAAAATCTCCAAAATTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTCCCATTCCTAACCCCCAGAAAGACTTAAAATCTCCAAAATTC  640

seq1  AAGTTGCAATGAGTCAATGAAATATGAATCGCTATACTGGCCCACTTAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCAATGAGTCAATGAAATATGAATCGCTATACTGGCCCACTTAGA  690

seq1  AATGAATACTCTTTAATGTTCTTCAGGTGTATGCAATGTGAGGGCAGGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATACTCTTTAATGTTCTTCAGGTGTATGCAATGTGAGGGCAGGGC  740

seq1  CAAACCCGTGACTTTTTAAACCATCATCTTTTGTTGACTTCTCTGTAAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCGTGACTTTTTAAACCATCATCTTTTGTTGACTTCTCTGTAAGT  790

seq1  CAGTCTTAGGTAATATAAAAATCTTAGGGCTCGAGAACTGGCTCAGTATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAGGTAATATAAAAATCTTAGGGCTCGAGAACTGGCTCAGTATT  840

seq1  TAAGAATACTTGATTCTTAATAAAGCCAGCCTTCCAGAGGACCCAAGTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATACTTGATTCTTAATAAAGCCAGCCTTCCAGAGGACCCAAGTTC  890

seq1  AGTTCCCAGATGCCTCACAACTTGTTACAGCAGCTGCAGTGGGTCCAGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAGATGCCTCACAACTTGTTACAGCAGCTGCAGTGGGTCCAGTG  940

seq1  CCCTCTTCTGGCCTCCAAGGTACTGCATGCTAATGGCAAACAATCACACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGGCCTCCAAGGTACTGCATGCTAATGGCAAACAATCACACA  990

seq1  AATAAACATATTTACATATAAGTAAAATAATCTACTACTTACTAAGTTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACATATTTACATATAAGTAAAATAATCTACTACTTACTAAGTTGT  1040

seq1  GGTGTTTTGGTCTTTACCTATGTTTTCTAAATAATATCATTTGCTCAACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTGGTCTTTACCTATGTTTTCTAAATAATATCATTTGCTCAACT  1090

seq1  TGGCAATGAGTTGGTTCTTGATTGAACTGAATTC  1129
      ||||||||||||||||||||||||||||||||||
seq2  TGGCAATGAGTTGGTTCTTGATTGAACTGAATTC  1124

seq1: chr1_84795956_84796428
seq2: B6Ng01-052C19.g_787_951 (reverse)

seq1  CACCACAACAACAACAAAAAAAGAGGAAATGATTATAATCTTCAAATCAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTAGGGTCCTCCTTTATGATCTCTTTATAAAAACAGAAGTGTATGCTTCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTCAATGTAAAACTCCAATGGTCCTGTAATTAATTTTTTTTTTAGTTTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGCATATTACCAATTCTTTTTTCTCTTTAATCAAAACATCTGAGAAAAAC  200
                                   | || |||| |  |  ||| |
seq2  ----------------------------CACCACAACAAC--AACAAATC  20

seq1  TG-TCTATTAATTT-----CCATA-------GCCAGGTGTGGTGGTGCAC  237
      ||  | ||| || |     || ||         |||| || | ||  || 
seq2  TGAGCCATTCATATGGAAGCCGTACACTACTCACAGGCGTAG-GGCCCAT  69

seq1  GCCTTTAATCCCAGCACTTGGGAGACAGAGGCAGGCAGATTTCTGAGTTC  287
       |  || || ||||  ||| |||| |||| |||||  || || |||||||
seq2  TC--TTCAT-CCAGGCCTT-GGAGGCAGA-GCAGGTGGAATT-TGAGTTC  113

seq1  GAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTACA  337
       |||||||||||||||||| || |||||||| || ||||||||||  |||
seq2  TAGGCCAGCCTGGTCTACAGAGCGAGTTCCA-GAAAGCCAGGGCTACACA  162

seq1  GAGAAACCCTGTCTCAAAAAACCAAAAAACAATTTCCCCATTGTATTGAC  387
      |||                                               
seq2  GAG-----------------------------------------------  165

seq1  ACCAATATTAAACCTATGTCTAGGGAAGAGAAGAAAGGCCTAGCATGGTG  437
                                                        
seq2  --------------------------------------------------  165

seq1  GTGCATGCCTAATGCTCAAGGCAGAGAAACACAGAG  473
                                          
seq2  ------------------------------------  165