BAC Information

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BAC

Clone NameB6Ng01-052D05
Chromosome1 (Build37)
Map Location 166,731,444 - 166,869,840
singlet/doubletdoublet
Overlap geneDpt, Xcl1
Upstream geneKifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream gene1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052D05.bB6Ng01-052D05.g
ACCDH875625DH875626
length956967
definitionDH875625|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D05, 5' end.DH875626|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,868,889 - 166,869,840)(166,731,444 - 166,732,393)
sequence
ggaattcaacttaatgcatcatatttcttgaagaatgaaactggctaata
ccctttagggtttaccaaaaagttccacacactgtatggcccttacatat
gatataagaaatctagagtcattgaatgctgtaagagagcgtaggatggt
tcatgtatacactgggcagacttacctaagagaaaggaagatctctctac
agtgatcaaggcgttacaactccgtaatggggttttgaccagtagtactt
aaaaacaaaacaaaacaaaaaacccaaaacaacttttctaggggatggga
ggatagctcagagtactagtggccctttcaaaggtcctgagttgattccc
agtacccaggtttggtcgttcataccatttgtaattccagcttcagggaa
tctgatacatggcctctgcagtcagttacacacacacacacacacacaca
cacacacacacacacacatgccaatttctatagagtctaacctttcttca
tagtaatcatactacatttatcagaaaggacataacctaattttttttag
gggtgaaactagctatgacttaagagctaagacacaggaatatgcttcaa
agaaaataattacctcactcatcttcctttcattttcctttaaaaaaata
agatttaagtacacaattagattctttgttaattaagtagctaattgtta
gtcataataggcaaatttggcaggaatgtcagactttatttactctttgt
ttctggacacaaatcttgattgcatttcccagttattctccatacctaca
ttatctatctctcccttctgtccttattttaaagatggcaccaggtaaga
gcttctcattaatgaaattcaaccaaacaatacacatcacttcctgggtg
gttaagatattgtgtttctatgctgtcttgtccttcaggcagtagagatg
ccatta
gaattccctgtacgaatttcttctgagaacaaagctgagtgtgggaaaca
aggttgtggcagactgaggatttgggccaacttcccatctaggttatttt
cctaagtactggaaatcaattgtctaggggaacttgatacttttcttctc
tttaaagaaagtccgatgataaaatttactcttcccagtgtgggatttgc
ctctgtctggtatctgctgatgtcagctttccaatcaataaaagacttcc
agagagctggaaaccttagtctgtgccggtatgtgtgcacctgtatgtgt
gtgtgtgcatgtgtgcatgtgtgcctgtgtgtgtgtatgtgtgtgcacaa
gggcatgcctgcctgtgtgtgtatgtatgtgtttgtgtttcaaggtttcg
aactttacccttaagaggactaattccccacaacacaatcctgtagctct
catgtcctctgtttctatgtcaacagaaatgtgtcctagaaaatattata
aaatgttaaaggatgtcaggcattgaggcactcaactttaatcccagaac
tcaggaggcagaggcaggtggatctctgtgagttcaaggactgtctggtc
tacaaagagagtttcaggacatttcatacagagacactcagccttgaaaa
accaaacaaaaattttaaaggatatctgtgtcttcttaggtaagttacct
aacatctctaaagccccatttcatgtataaagcagggaagatcatgctag
caatttttgcccttttcatagaattgttttgatgattaaatgactaaaca
gatccctatttaacagaatactcaccatgtaactccttgtgaaggtttgt
catgatcattgtagggagactttgttctctgagacaagcacacctagcta
gtaattacaaatgcaagtggcaagatacatggactttggaagataatcag
tagatctatgatatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166868889_166869840
seq2: B6Ng01-052D05.b_47_1001 (reverse)

seq1  TAATGGCATCTCTTGCTGCCTGAAGGACAAGACAGCATAGAAACACAATA  50
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  TAATGGCATCTC-TACTGCCTGAAGGACAAGACAGCATAGAAACACAATA  49

seq1  TCTTAACCA-CCAGGAAGTGATGTGTATTGTTTGGTTGAATTTCATTAGT  99
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  TCTTAACCACCCAGGAAGTGATGTGTATTGTTTGGTTGAATTTCATTAAT  99

seq1  GAGAAGCTCTTACCTGGTGCCATCTTT-AAATAAGGACAGAAGGGAGAGA  148
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGAAGCTCTTACCTGGTGCCATCTTTAAAATAAGGACAGAAGGGAGAGA  149

seq1  TAGATAATGTAGGTATGGAG-ATAACTGGGAAATGCAATCAAGATTTGTG  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGATAATGTAGGTATGGAGAATAACTGGGAAATGCAATCAAGATTTGTG  199

seq1  TCCAG-AACAAAGAGTAAATAAAGTCTGACATTCCTGCCAAATTTGCCTA  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAACAAAGAGTAAATAAAGTCTGACATTCCTGCCAAATTTGCCTA  249

seq1  TTATGACTAACAATTAGCTACTTAATTAACAAAGAATCTAATTGTGTACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTAACAATTAGCTACTTAATTAACAAAGAATCTAATTGTGTACT  299

seq1  TAAATCTTATTTTTTTAAAGGAAAATGAAAGGAAGATGAGTGAGGTAATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTATTTTTTTAAAGGAAAATGAAAGGAAGATGAGTGAGGTAATT  349

seq1  ATTTTCTTTGAAGCATATTCCTGTGTCTTAGCTCTTAAGTCATAGCTAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTGAAGCATATTCCTGTGTCTTAGCTCTTAAGTCATAGCTAGT  399

seq1  TTCACCCCTAAAAAAAATTAGGTTATGTCCTTTCTGATAAATGTAGTATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCCTAAAAAAAATTAGGTTATGTCCTTTCTGATAAATGTAGTATG  449

seq1  ATTACTATGAAGAAAGGTTAGACTCTATAGAAATTGGCATGTGTGTGTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATGAAGAAAGGTTAGACTCTATAGAAATTGGCATGTGTGTGTGT  499

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTGACTGCAGAGGCCATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTGACTGCAGAGGCCATG  549

seq1  TATCAGATTCCCTGAAGCTGGAATTACAAATGGTATGAACGACCAAACCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATTCCCTGAAGCTGGAATTACAAATGGTATGAACGACCAAACCT  599

seq1  GGGTACTGGGAATCAACTCAGGACCTTTGAAAGGGCCACTAGTACTCTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTGGGAATCAACTCAGGACCTTTGAAAGGGCCACTAGTACTCTGA  649

seq1  GCTATCCTCCCATCCCCTAGAAAAGTTGTTTTGGGTTTTTTGTTTTGTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTCCCATCCCCTAGAAAAGTTGTTTTGGGTTTTTTGTTTTGTTT  699

seq1  TGTTTTTAAGTACTACTGGTCAAAACCCCATTACGGAGTTGTAACGCCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAGTACTACTGGTCAAAACCCCATTACGGAGTTGTAACGCCTT  749

seq1  GATCACTGTAGAGAGATCTTCCTTTCTCTTAGGTAAGTCTGCCCAGTGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTGTAGAGAGATCTTCCTTTCTCTTAGGTAAGTCTGCCCAGTGTA  799

seq1  TACATGAACCATCCTACGCTCTCTTACAGCATTCAATGACTCTAGATTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAACCATCCTACGCTCTCTTACAGCATTCAATGACTCTAGATTTC  849

seq1  TTATATCATATGTAAGGGCCATACAGTGTGTGGAACTTTTTGGTAAACCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCATATGTAAGGGCCATACAGTGTGTGGAACTTTTTGGTAAACCC  899

seq1  TAAAGGGTATTAGCCAGTTTCATTCTTCAAGAAATATGATGCATTAAGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTATTAGCCAGTTTCATTCTTCAAGAAATATGATGCATTAAGTT  949

seq1  GAATTC  952
      ||||||
seq2  GAATTC  955

seq1: chr1_166731444_166732393
seq2: B6Ng01-052D05.g_65_1005

seq1  GAATTCCATGTACGAATTTCTTCTGAGAACAAAGCTGAGTGTGGGAAACA  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTACGAATTTCTTCTGAGAACAAAGCTGAGTGTGGGAAACA  50

seq1  AGGTTGTGGCAGACTGAGGATTTGGGCCAACTTCCCATCTAGGTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGGCAGACTGAGGATTTGGGCCAACTTCCCATCTAGGTTATTTT  100

seq1  CCTAAGTACTGGAAATCAATTGTCTAGGGGAACTTGATACTTTTCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTACTGGAAATCAATTGTCTAGGGGAACTTGATACTTTTCTTCTC  150

seq1  TTTAAAGAAAGTCCGATGATAAAATTTACTCTTCCCAGTGTGGGATTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAAGTCCGATGATAAAATTTACTCTTCCCAGTGTGGGATTTGC  200

seq1  CTCTGTCTGGTATCTGCTGATGTCAGCTTTCCAATCAATAAAAGACTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGGTATCTGCTGATGTCAGCTTTCCAATCAATAAAAGACTTCC  250

seq1  AGAGAGCTGGAAACCTTAGTCTGTGCCGGTATGTGTGCACCTGTATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTGGAAACCTTAGTCTGTGCCGGTATGTGTGCACCTGTATGTGT  300

seq1  GTGTGTGCATGTGTGCATGTGTGCCTGTGTGTGTGTATGTGTGTGCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATGTGTGCATGTGTGCCTGTGTGTGTGTATGTGTGTGCACAA  350

seq1  GTGCATGCATGCCTGTGTGTGTATGTATGTGTTTGTGTTTCAAGGTTTCG  400
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGCCTGCCTGTGTGTGTATGTATGTGTTTGTGTTTCAAGGTTTCG  400

seq1  AACTTTACCCTTAAGAGGACTAATTCCCCACAACACAATCCTGTAGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTACCCTTAAGAGGACTAATTCCCCACAACACAATCCTGTAGCTCT  450

seq1  CATGTCCTCTGTTTCTATGTCAACAGAAATGTGTCCTAGAAAATATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCTGTTTCTATGTCAACAGAAATGTGTCCTAGAAAATATTATA  500

seq1  AAATGTTAAAGGATGTCAGGCATTGAGGCACTCAACTTTAATCCCAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAAAGGATGTCAGGCATTGAGGCACTCAACTTTAATCCCAGAAC  550

seq1  TCAGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTCAAGGACTGTCTGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTCAAGGACTGTCTGGTC  600

seq1  TACAAAGAGAGTTTCAGGACATTTCATACAAAGAAACCCAGCCTTGAAAA  650
      |||||||||||||||||||||||||||||| ||| || ||||||||||||
seq2  TACAAAGAGAGTTTCAGGACATTTCATACAGAGACACTCAGCCTTGAAAA  650

seq1  ACCAAACAAAAATTTTAAAGGATATCTGTGTCTTCTTAGGTAAGTTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAAAAATTTTAAAGGATATCTGTGTCTTCTTAGGTAAGTTACCT  700

seq1  AACATCTCTAAAGCCCCATTTCATGTATAAAGCAGGGAAGATCATGCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCTAAAGCCCCATTTCATGTATAAAGCAGGGAAGATCATGCTAG  750

seq1  CAATTTTTGCCCATTTCATAGAATTGTTTTGATGATTAAAATGACTAAAC  800
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  CAATTTTTGCCCTTTTCATAGAATTGTTTTGATGATT-AAATGACTAAAC  799

seq1  AGATACCATATTTAACAGAATACTCAACCATGTAACTCCTTGTGAAGGTT  850
      |||| || ||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAT-CCCTATTTAACAGAATACTC-ACCATGTAACTCCTTGTGAAGGTT  847

seq1  TGTTCATGATCACTGTTAGGGACACTTGGTTCTCTGAGACAAGCCACACC  900
      || ||||||||| || |||||| |||| ||||||||||||||| ||||||
seq2  TG-TCATGATCATTG-TAGGGAGACTTTGTTCTCTGAGACAAG-CACACC  894

seq1  TAGCTAGTAAGTTTCAAAATGGAAGTGGCAGGATACATGGACTTTTGGAA  950
      ||||||||||  ||  ||||| |||||||| ||||||||||| |||||||
seq2  TAGCTAGTAA--TTACAAATGCAAGTGGCAAGATACATGGAC-TTTGGAA  941