BAC Information

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BAC

Clone NameB6Ng01-052H02
Chromosome1 (Build37)
Map Location 31,476,311 - 31,477,426
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052H02.bB6Ng01-052H02.g
ACCDH875799DH875800
length1,2871,129
definitionDH875799|Mus musculus domesticus DNA, BAC clone: B6Ng01-052H02, 5' end.DH875800|Mus musculus domesticus DNA, BAC clone: B6Ng01-052H02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaatcccagcaaccacatggtgcttcacaaccatccttaatgag
aacttatgccttcttctggtgtgtctgaagacagctacagtgtacttatg
tataataataaataaatctttaaaaaaataaaaagacagggttaaaacat
aggaagacagtattgagtcagggaaggagccagggtggaagcccatatac
aggaggaagctgtgtttgaattccttctggtttccatttctagaaaacat
ctcagatagttcagatttcttgtagaagcagcactctctgcagaggagag
cacacatcttgtactataggagttgaggctgatctgagctttctcaaata
tatatatatatatgctattgaggcagagaggttaaatgattcctagaagg
cttcagtccgcttgctttagttatagtccgtacctccccccacccaatgc
tctcaaatgtccagagtggcaagatgacagatgagttgcatgactatggc
cctttagaaggcacttgaattgcttttgggggttagagggtgtcagtctc
atgataactgcttcaaacctgacagaaaggtgatgagggagcagcattta
agagtacctcagaaaaggatccagtcaaagtgccgtgataaagtttaaca
gttggcaaagatccagaacataagtcaggaggttataactacctcctgac
ttatgtgggggatattaaaagacaaaggactgtgtggaccacaatgcatg
gttaagtataaggttaacataaggttaaatgtacttgtatacctggctgg
gtcatgtaccagagtactattgaaggataaggtaactgtactagctgttt
atttacatcagactccaagatcatacagaagtatattttatattgtcagg
ctatgtaaagagacaatttaattctaaggtgaattcgcccaaaagaaatg
atttccaaattttcaattaaaaatatattcccaagacagtggctgcattg
tctgtagtaatgatcattttacaaagctttttttttgtggttttcaacaa
caacaaccctatgaacagaaaggttaacaattttttgaacatttcattcc
tattccccaccttgccgatgaaaaccctccgtctagtgccaaactctggt
attaatagttaattgtaaccaaagactgattacaaggcgcgcgtggaggg
cccattgtgtgccttccatgaattcggagagcctggttcatcacatcgct
acttccgtccgtcgtctatggactatctgacgtactg
gaattcaattcaattcaatctagtttagttcagatcagatcagatcagtt
cctttcagatgaagactgttgtgctcagttcaatttgaggcagagcagtt
gaattaagttcagttcacttggtggtgttcagaagcactctttccaagca
gagcaatacagtcagaaactgaaagaagccaatttgaatcagtcaccttg
aagaggaggttgagccagaacagctgagttgaaccaggcagcaagaattc
agaaagatctagaaagggtgagtttattcagcagtaagtctgagaggctg
caacattctaggccttcattagcagagaggttggaagctgaaacctgcaa
ggtccaggctagagaagattagattgtacagtggctataaccttccaggc
ctaggagtaattagaaacactgtgggttctgcccaagccatgtattcata
aagtttgggtattgctctcatctcatctattcatttgaggccataaaagc
gacatttacatttacagagagatctccttcaaacacagtcatggccactg
tgttccttgagaacttgctgctttccaataaatggtgatcatctaagaca
agtatttcttgtggtttattttatatctttacctttaagaaatgttttaa
taaaatagatgattagaattcactaagtaatttgatgaacaacaaaagtt
catttctacttgattcatgcaggctaccagtctgatttcatagaaaatgt
atactaaaaataattatgctgtgtatctaaaactcgagttataaaaaaac
tcacactaagaaattatcaaagtaggactatggtacaaatttgactttca
taaatgattcatggcatacatacttaatatgccatagccatgccagtact
cttctttcctaatatcaaatgtaggcatccactaattaatccaggaaaac
atctttgctcagcctacatgtgcactcgtaaatgttctcatcccacagca
cacccttgtgaaagcagttgcttacgatgctgagtacagtgaagttcatg
agtttcaagtttagcctgaagtaatgcacattgtgtttcccttgtctccc
tacccatcctagagaatgagcgagagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31476311_31477426
seq2: B6Ng01-052H02.g_80_1197 (reverse)

seq1  TTGCTCTCTGCCTCATCTCTCTAGGATGGGTAGGGAGACAAGGG-AACAC  49
      ||||||||   ||||| ||||||||||||||||||||||||||| |||||
seq2  TTGCTCTC--GCTCAT-TCTCTAGGATGGGTAGGGAGACAAGGGAAACAC  47

seq1  ATTGTGGCAATAACTCAGGCTAAACTTG-AACTCATGGAACTCACTGTAC  98
      | ||| ||| ||  |||||||||||||| |||||||| |  |||||||| 
seq2  AATGT-GCATTACTTCAGGCTAAACTTGAAACTCATGAACTTCACTGTA-  95

seq1  CTCAGCATCGTAAGC-ACTGCTATCAC-AGGGTGTGCTGTGGGATGAGAA  146
      ||||||||||||||| |||||| |||| ||||||||||||||||||||||
seq2  CTCAGCATCGTAAGCAACTGCTTTCACAAGGGTGTGCTGTGGGATGAGAA  145

seq1  CATTTACGAGTGCACATGTAGGCTGAGCAAAGATGTTTTCCTGGATTAAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACGAGTGCACATGTAGGCTGAGCAAAGATGTTTTCCTGGATTAAT  195

seq1  TAGT-GATGCCTACATTTGATA-TAGGAAAGAAGAGTACTGGCATGGCTA  244
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAGTGGATGCCTACATTTGATATTAGGAAAGAAGAGTACTGGCATGGCTA  245

seq1  TGGCATATTAAGTATGTATGCCATGAATCATTTATG-AAGTCAAATTTTG  293
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  TGGCATATTAAGTATGTATGCCATGAATCATTTATGAAAGTCAAA-TTTG  294

seq1  TACCATAGTCCTACTTTGATAATTTCTTAGTGTGAGTTTTTTTATAACTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAGTCCTACTTTGATAATTTCTTAGTGTGAGTTTTTTTATAACTC  344

seq1  GAGTTTTAGATACACAGCATAATTATTTTTAGTATACATTTTCTATGAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTAGATACACAGCATAATTATTTTTAGTATACATTTTCTATGAAA  394

seq1  TCAGACTGGTAGCCTGCATGAATCAAGTAGAAATGAAC-TTTGTTGTTCA  442
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAGACTGGTAGCCTGCATGAATCAAGTAGAAATGAACTTTTGTTGTTCA  444

seq1  TCAAATTACTTAGTGAATTCTAATCATCTATTTTATTAAAACATTTCTTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTACTTAGTGAATTCTAATCATCTATTTTATTAAAACATTTCTTA  494

seq1  AAGGTAAAGATATAAAATAAACCACAAGAAATACTTGTCTTAGATGATCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAGATATAAAATAAACCACAAGAAATACTTGTCTTAGATGATCA  544

seq1  CCATTTATTGGAAAGCAGCAAGTTCTCAAGGAACACAGTGGCCATGACTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATTGGAAAGCAGCAAGTTCTCAAGGAACACAGTGGCCATGACTG  594

seq1  TGTTTGAAGGAGATCTCTCTGTAAATGTAAATGTCGCTTTTATGGCCTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAGGAGATCTCTCTGTAAATGTAAATGTCGCTTTTATGGCCTCA  644

seq1  AATGAATAGATGAGATGAGAGCAATACCCAAACTTTATGAATACATGGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATAGATGAGATGAGAGCAATACCCAAACTTTATGAATACATGGCT  694

seq1  TGGGCAGAACCCACAGTGTTTCTAATTACTCCTAGGCCTGGAAGGTTATA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGAACCCACAGTGTTTCTAATTACTCCTAGGCCTGGAAGGTTATA  744

seq1  GCCACTGTACAATCTAATCTTCTCTAGCCTGGACCTTGCAGGTTTCAGCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTACAATCTAATCTTCTCTAGCCTGGACCTTGCAGGTTTCAGCT  794

seq1  TCCAACCTCTCTGCTAATGAAGGCCTAGAATGTTGCAGCCTCTCAGACTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCTCTCTGCTAATGAAGGCCTAGAATGTTGCAGCCTCTCAGACTT  844

seq1  ACTGCTGAATAAACTCACCCTTTCTAGATCTTTCTGAATTCTTGCTGCCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAATAAACTCACCCTTTCTAGATCTTTCTGAATTCTTGCTGCCT  894

seq1  GGTTCAACTCAGCTGTTCTGGCTCAACCTCCTCTTCAAGGTGACTGATTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAACTCAGCTGTTCTGGCTCAACCTCCTCTTCAAGGTGACTGATTC  944

seq1  AAATTGGCTTCTTTCAGTTTCTGACTGTATTGCTCTGCTTGGAAAGAGTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCTTCTTTCAGTTTCTGACTGTATTGCTCTGCTTGGAAAGAGTG  994

seq1  CTTCTGAACACCACCAAGTGAACTGAACTTAATTCAACTGCTCTGCCTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAACACCACCAAGTGAACTGAACTTAATTCAACTGCTCTGCCTCA  1044

seq1  AATTGAACTGAGCACAACAGTCTTCATCTGAAAGGAACTGATCTGATCTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTGAGCACAACAGTCTTCATCTGAAAGGAACTGATCTGATCTG  1094

seq1  ATCTGAACTAAACTAGATTGAATT  1116
      ||||||||||||||||||||||||
seq2  ATCTGAACTAAACTAGATTGAATT  1118