BAC Information

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BAC

Clone NameB6Ng01-052K08
Chromosome1 (Build37)
Map Location 181,063,321 - 181,210,753
singlet/doubletdoublet
Overlap geneSmyd3, LOC666354
Upstream geneLOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b
Downstream geneLOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052K08.bB6Ng01-052K08.g
ACCDH875936DH875937
length441777
definitionDH875936|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K08, 5' end.DH875937|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,210,313 - 181,210,753)(181,063,321 - 181,063,912)
sequence
gaattcaatctaaccaaccaaggtgacttccatggttgtctcttagctgc
aacagggactcccagccctgtcgtaccttttcttccctgggctttgaaac
tctaggctcttctggtttgcacctagatatctttgtccacggttttcatt
ctacattcctgccacatgtacacgtgcacaactcctgtctccaaaacttt
gctggttttgtaacctagttcacccccagggctcagcatggggtctcata
cactgagaagcaaggtgtatgattgtgatgtgaaaagcactaattgttag
caactaggaatgtccatcagcctgcccccttccttccctctttgtcttgt
tcacgtgctctctctcattccctgtcagtctctatctcgactctctctct
ctctctctctctccctccctccctccctccctccctccctc
gaattctttgctaacagcacacgagtattggtccgccttacactgcatag
ttgagctgcatttgtcgggactccatagaaatgcaccaaagaacttctgg
tgatgtgctgcagtttcttgctgcttcctctggactcaggatgattagca
gagtggtgtagctgagacggatgcacttgttcaggcaaggcaagtagagg
acatgtgatatttggaggttataaataagacagtgatggaggctgagcta
ggcttgcttatatagagagctcgctgtgcagtgcttgtgggcctcacatc
ttcgctgatcttcccttccctgagagaggcacagtcaagaacttttcctg
gtgctccttcctgctgacatgagccaaggctgaggcctggctgtctctgc
taggtcatgtaactactgttgctaactgactactgaactggactgctggt
gtatccatgaggtgtttatgagtggactgagctgccactgctaatctgtg
aactgaactgctgatttccagacaactcagatgggagttgctccaaagaa
cttttctaaacaggtacacttcccgtgtaccctttgttttccactacctc
tcgtgggtaatgggctaaaagggagggtaaagcatttaagaaccatcatt
aaaagtaggttttgaaaaagttaaaattacaaatagggatggcttggagt
tgtttctttatgaccaagtatgaccaagactgacagcaatttgagttact
ctaagcccctggggtggggtgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_181210313_181210753
seq2: B6Ng01-052K08.b_41_481 (reverse)

seq1  GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GTCGAGATAGAGACTGACAGGGAATGAGAGAGAGCACGTGAACAAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGATAGAGACTGACAGGGAATGAGAGAGAGCACGTGAACAAGACAA  100

seq1  AGAGGGAAGGAAGGGGGCAGGCTGATGGACATTCCTAGTTGCTAACAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGGAAGGGGGCAGGCTGATGGACATTCCTAGTTGCTAACAATT  150

seq1  AGTGCTTTTCACATCACAATCATACACCTTGCTTCTCAGTGTATGAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTCACATCACAATCATACACCTTGCTTCTCAGTGTATGAGACC  200

seq1  CCATGCTGAGCCCTGGGGGTGAACTAGGTTACAAAACCAGCAAAGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGAGCCCTGGGGGTGAACTAGGTTACAAAACCAGCAAAGTTTTG  250

seq1  GAGACAGGAGTTGTGCACGTGTACATGTGGCAGGAATGTAGAATGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGAGTTGTGCACGTGTACATGTGGCAGGAATGTAGAATGAAAAC  300

seq1  CGTGGACAAAGATATCTAGGTGCAAACCAGAAGAGCCTAGAGTTTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGACAAAGATATCTAGGTGCAAACCAGAAGAGCCTAGAGTTTCAAAG  350

seq1  CCCAGGGAAGAAAAGGTACGACAGGGCTGGGAGTCCCTGTTGCAGCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAAGAAAAGGTACGACAGGGCTGGGAGTCCCTGTTGCAGCTAAG  400

seq1  AGACAACCATGGAAGTCACCTTGGTTGGTTAGATTGAATTC  441
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACCATGGAAGTCACCTTGGTTGGTTAGATTGAATTC  441

seq1: chr1_181063321_181063912
seq2: B6Ng01-052K08.g_250_841

seq1  CAAGGCAAGTAGAGGACATGTGATATTTGGAGGTTATAAATAAGACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAGTAGAGGACATGTGATATTTGGAGGTTATAAATAAGACAGTG  50

seq1  ATGGAGGCTGAGCTAGGCTTGCTTATATAGAGAGCTCGCTGTGCAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCTGAGCTAGGCTTGCTTATATAGAGAGCTCGCTGTGCAGTGCT  100

seq1  TGTGGGCCTCACATCTTCGCTGATCTTCCCTTCCCTGAGAGAGGCACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCCTCACATCTTCGCTGATCTTCCCTTCCCTGAGAGAGGCACAGT  150

seq1  CAAGAACTTTTCCTGGTGCTCCTTCCTGCTGACATGAGCCAAGGCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTTTTCCTGGTGCTCCTTCCTGCTGACATGAGCCAAGGCTGAGG  200

seq1  CCTGGCTGTCTCTGCTAGGTCATGTAACTACTGTTGCTAACTGACTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCTCTGCTAGGTCATGTAACTACTGTTGCTAACTGACTACTG  250

seq1  AACTGGACTGCTGGTGTATCCATGAGGTGTTTATGAGTGGACTGAGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACTGCTGGTGTATCCATGAGGTGTTTATGAGTGGACTGAGCTGC  300

seq1  CACTGCTAATCTGTGAACTGAACTGCTGATTTCCAGACAACTCAGATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTAATCTGTGAACTGAACTGCTGATTTCCAGACAACTCAGATGGG  350

seq1  AGTTGCTCCAAAGAACTTTTCTAAACAGGTACACTTCCCGTGTACCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTCCAAAGAACTTTTCTAAACAGGTACACTTCCCGTGTACCCTTT  400

seq1  GTTTTCCACTACCTCTCGTGGGTAATGGGCTAAAAGGGAGGGTAAAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCACTACCTCTCGTGGGTAATGGGCTAAAAGGGAGGGTAAAGCAT  450

seq1  TTAAGAACCATCATTAAAAGTAGGTTTTGAAAAAGTTAAAATTACAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACCATCATTAAAAGTAGGTTTTGAAAAAGTTAAAATTACAAATA  500

seq1  GGGATGGCTTGGAGTTGTTTCTTTATGACCAAGTATGACCAAGACTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCTTGGAGTTGTTTCTTTATGACCAAGTATGACCAAGACTGACA  550

seq1  GCAATTTGAGTTACTCTAAGCCCCTGGGGTGGGGTGGGGGTG  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTGAGTTACTCTAAGCCCCTGGGGTGGGGTGGGGGTG  592