BAC Information

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BAC

Clone NameB6Ng01-052M23
Chromosome1 (Build37)
Map Location 53,456,591 - 53,591,288
singlet/doubletdoublet
Overlap geneLOC100042162
Upstream geneNab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866
Downstream geneDnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052M23.bB6Ng01-052M23.g
ACCDH876051DH876052
length744819
definitionDH876051|Mus musculus domesticus DNA, BAC clone: B6Ng01-052M23, 5' end.DH876052|Mus musculus domesticus DNA, BAC clone: B6Ng01-052M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,456,591 - 53,457,214)(53,590,469 - 53,591,288)
sequence
gaattcagcatagcaaagtgaactaacaccctgatacacatctttaaaag
aaagtcatattctaagaagtctatctcatataagagacaatccacttcac
tagatgcacagatttcaacatatacacaagaagtttcaaatattttaaaa
taatattatcctaaaaaataactccctagtgacagataccaaagatactg
aggttgatgaaatacctgatagattctaaagaatgattgtggaaaagttt
agtaatttgtctgggggctggaggtggggtttaggagagttgctacagtg
ttttcttagcatgcataaagccctgggttcaattctcaatactacacaga
tccaggcatggtggcaatagacctgtaactctaacatttggaaaatgaat
gtaggaggctcaggaattcaaggtcaccctcaatatggagttcatgttca
ctttgagctttatgaaaccctgtatcacacaaagaaaatctcaataacaa
atgagattcaagaagatacacacacacacaaacaaacaaacaaattagga
agacaatacagatatgaatgaggaacttatcaaacacagaaagaaagatt
gctgtgagttcaaggccagtctgggctacacagtaagagtctctctcgaa
agttaaaatgtaagtctccaaatcagactagcttaagcagttatattaag
aatattgagccgggtgtggtggcacacgccttttaatcccagca
gaattcatcagaaggcatacaaaggtaagacaaactggaactttaagatt
taaaaagtgggaaacttgaattaaatgtattaatctcaacatgtttttta
aagctattggaaaacatactttttgttaggtatgattggattttttttcc
attttattcttttttatttcttttccttggtacaaatcttctcaggcctg
gagtccaggctggcctgtacctggagtctggctgcctctgcctaccaagt
gctatgattacaggcatatgtcagcactgcctgctagaacctcagctcag
accaaaataaaaaggcttgaattcataataactattatccaaaaacaggc
aaagtgtagcatcttagaaatggagacagtgttatcagtataattattct
ttcttaaaactgaagacacctgaaaagcctgcctagctttgtgcattaca
atatctagatgttattgttttcttttttaaatctctccctgagtgtcaca
gatgtaggccagattggagcagattaaaagcaggtaaaggcaggtttatt
aggaggcagctctcaggtgggtctactaatctccaaggtggaggtaagtg
aagtcacacatccaggctaaagcgggggagggggtaatagagcttagatg
aggagagggtgtcagctaacacctggcattgtatccacacacagtcaaaa
gcttagcccctgggcgggcactcttgggtgggttgctagaaacttgggag
atgtattgacatgtttagcctggagttctctccatgtggatggagaagat
ttttttgcgtggggcaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53456591_53457214
seq2: B6Ng01-052M23.b_229_781

seq1  AAGATACTGGGGTTGATGAAATACCTGATAGATTCAAAAGAATGGTTGTT  50
      ||||||||| ||||||||||||||||||||||||| |||||||| |||| 
seq2  AAGATACTGAGGTTGATGAAATACCTGATAGATTCTAAAGAATGATTGTG  50

seq1  GAAAAGCTTAGTGATATGTCT-GGGGTTAGGGGTGGGGTTTAGGAGAGTT  99
      |||||| ||||| || ||||| |||| | | |||||||||||||||||||
seq2  GAAAAGTTTAGTAATTTGTCTGGGGGCTGGAGGTGGGGTTTAGGAGAGTT  100

seq1  GGTACAGTGTTTTCTTAGCATGCATAAAGCCCTGGGTTCAATCCTCAATA  149
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTACAGTGTTTTCTTAGCATGCATAAAGCCCTGGGTTCAATTCTCAATA  150

seq1  CCACACAAAGCCAGGCTTGGTAGCAATAGACCTGTAACTCTAACATTTGG  199
      | ||||| | |||||| |||| ||||||||||||||||||||||||||||
seq2  CTACACAGATCCAGGCATGGTGGCAATAGACCTGTAACTCTAACATTTGG  200

seq1  ATGATGGAGGTAGGAGACTCAGGAATTCAAGATCACCCTCAGCATGGAGT  249
      |  ||| | ||||||| |||||||||||||| |||||||||  |||||||
seq2  AAAATGAATGTAGGAGGCTCAGGAATTCAAGGTCACCCTCAATATGGAGT  250

seq1  TCAAGTTCAGCTTGAGCTGTATGAAACCCTATATCACACAAAGAAAATCT  299
      ||| |||||  ||||||| ||||||||||| |||||||||||||||||||
seq2  TCATGTTCACTTTGAGCTTTATGAAACCCTGTATCACACAAAGAAAATCT  300

seq1  TAGTAACAAATGAAATTCAAGAATACACACACACACACACACACACACAC  349
       | |||||||||| ||||||||| | ||||||||||||| ||| ||| ||
seq2  CAATAACAAATGAGATTCAAGAAGATACACACACACACAAACAAACAAAC  350

seq1  ACACACACACACACACACACACAATTAGGAAGACAATACAGATATGAATG  399
      |                     ||||||||||||||||||||||||||||
seq2  A---------------------AATTAGGAAGACAATACAGATATGAATG  379

seq1  AGGAACTTATCAAACACAGAAAGAAAGATTGCTGTGAGTTCAAGGCCAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGAACTTATCAAACACAGAAAGAAAGATTGCTGTGAGTTCAAGGCCAGT  429

seq1  CTGGGCTACACAGTAAGAGTCTCTCTTGAAAGTCAAAGAAAATGTAGGTG  499
      |||||||||||||||||||||||||| ||||||     |||||||     
seq2  CTGGGCTACACAGTAAGAGTCTCTCTCGAAAGT----TAAAATGT-----  470

seq1  CAAGTCTCCAAATCAGACTAGCTTAAGCAGTTATACTAAGAATATTGATT  549
       |||||||||||||||||||||||||||||||||| ||||||||||||  
seq2  -AAGTCTCCAAATCAGACTAGCTTAAGCAGTTATATTAAGAATATTGA--  517

seq1  TTTGGGCTGGTGAGATGGCTCATCTGTTAAGAGCACTGACTGTTTTTCTG  599
          | | |||| | |||| |                 ||   ||||   
seq2  ----GCCGGGTGTGGTGGCAC-----------------ACGCCTTTT---  543

seq1  GAGGTCATGAGTTCAAATCCCAGCA  624
                     ||||||||||
seq2  ---------------AATCCCAGCA  553

seq1: chr1_53590469_53591288
seq2: B6Ng01-052M23.g_68_886 (reverse)

seq1  ACCTG-CCCACACAGAAAAATCTTCTCCATCCACATGGAGAGAACTCCAG  49
      ||||| ||||| || |||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCCACGCAAAAAAATCTTCTCCATCCACATGGAGAGAACTCCAG  50

seq1  GCT-AACATGTCAATACATCT-CCAAGTTTCTAGCAACCCACCCAAGAGT  97
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTAAACATGTCAATACATCTCCCAAGTTTCTAGCAACCCACCCAAGAGT  100

seq1  GCCCGCCCAGGGGCTAAGCTTTTGACCATGTATAGACACAATCCCAGGCA  147
      ||||||||||||||||||||||||||  ||| | || ||||| |||||  
seq2  GCCCGCCCAGGGGCTAAGCTTTTGACTGTGTGTGGATACAATGCCAGGTG  150

seq1  TTAGCCAACACACCATCTCTCCTCACCTAAGCTCTATTACCCCCTCCCCC  197
      |||||  ||||     ||||||||| ||||||||||||||||||||||||
seq2  TTAGCTGACAC----CCTCTCCTCATCTAAGCTCTATTACCCCCTCCCCC  196

seq1  GCTTTAGCCTGGATGTGTGACTTCACTTACCTCTATCTGGGAGATTAGTG  247
      ||||||||||||||||||||||||||||||||| | || |||||||||| 
seq2  GCTTTAGCCTGGATGTGTGACTTCACTTACCTCCACCTTGGAGATTAGTA  246

seq1  GACCCACCTGAGAGCTGCCTCCTAATAAACCTGCCTTTACCTGCTTTTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACCTGAGAGCTGCCTCCTAATAAACCTGCCTTTACCTGCTTTTAA  296

seq1  TCTGCTCCAATCTGGCCTACATCTGTGACACTCAGGGAGAGATTAAAAAA  347
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTGCTCCAATCTGGCCTACATCTGTGACACTCAGGGAGAGATTTAAAAA  346

seq1  AGAAAACAATAACATCTAGATACTGTAATGCACAAGGCTAGGCAGGCTTT  397
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  AGAAAACAATAACATCTAGATATTGTAATGCACAAAGCTAGGCAGGCTTT  396

seq1  TCAGGTGTCTTCAGTTTTAAGAAAGAATAATTATACTGATAACACTGTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTCTTCAGTTTTAAGAAAGAATAATTATACTGATAACACTGTCT  446

seq1  CCATTTCTAAGATGCTACACTTTGCCTGTTTTTGGATAATAGTTATTATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTAAGATGCTACACTTTGCCTGTTTTTGGATAATAGTTATTATG  496

seq1  AGTTCAAGCCTTTTTATTTTGGTCTGAGCTGAGGTTTTAGCAGGCAGTGC  547
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATTCAAGCCTTTTTATTTTGGTCTGAGCTGAGGTTCTAGCAGGCAGTGC  546

seq1  TGACATATGCCTGTAATCATAGCACTTGGTAGGCAGAGGCAGCCAGACTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATGCCTGTAATCATAGCACTTGGTAGGCAGAGGCAGCCAGACTC  596

seq1  CAGGTACAGGCCAGCCTGGGCTCCAGGCCTGAGAAGATTTGTACCAAGGA  647
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGGTACAGGCCAGCCTGGACTCCAGGCCTGAGAAGATTTGTACCAAGGA  646

seq1  AAAGAAATAAAAAAGAATAAAATGGAAAAAAATTCCAATCATACCTAACA  697
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAGAAATAAAAAAGAATAAAATGGAAAAAAAATCCAATCATACCTAACA  696

seq1  AAAAGTATGTTTTCCATTAGCTTTAAAAAACTTGTTGAGATTAATACATT  747
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  AAAAGTATGTTTTCCAATAGCTTTAAAAAACATGTTGAGATTAATACATT  746

seq1  TAATTCAAGTTTTCCACTTTTTAAATCTTAAAGTTCCAGTTTGTCTTACC  797
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAGTTTCCCACTTTTTAAATCTTAAAGTTCCAGTTTGTCTTACC  796

seq1  TTTGTATGCCTTCTGATGAATTC  820
      |||||||||||||||||||||||
seq2  TTTGTATGCCTTCTGATGAATTC  819