BAC Information

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BAC

Clone NameB6Ng01-052O18
Chromosome1 (Build37)
Map Location 136,047,197 - 136,207,584
singlet/doubletdoublet
Overlap geneChit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4
Upstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414
Downstream geneLOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052O18.bB6Ng01-052O18.g
ACCDH876130DH876131
length1,034970
definitionDH876130|Mus musculus domesticus DNA, BAC clone: B6Ng01-052O18, 5' end.DH876131|Mus musculus domesticus DNA, BAC clone: B6Ng01-052O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,206,546 - 136,207,584)(136,047,197 - 136,048,166)
sequence
gaattcactccatagaccagactgtcctttgaactcagagatccacctgc
ctcttcccattaagtgttgggattaaaggcatgagccaccaccaccaggc
taatgccttctttcttgtagtagaaggatggtagacagttgggtatagca
actgtgtgtgggcaggcagtggggagcaggacgcaggggaaagaaagggc
agaggctctcctagttctgcacttggatgcggactatagaggataacttc
atttgtctgcttgataataaacatattctattcggtgtacaattttacat
atatcagcatgtgcagtttccttttaaaacagaacagctcaatgtgaaaa
catctagcaggatatgggaaaggtgtttgagggttgctatcaaaactgaa
ctgtccctgtttgctgtctgtagaggtaatgccttgtagtgcagtcttct
tgaggcgagtgacatcatgagtgggaacattaataaaggacctggagaat
tgcccaagtgatgacctggcctttggggaagcacactggctattcaagta
caggctactctgtgcttttttttctcccctagccttcagccaacattcag
tcattctctggacttcgaagctagccattccccagagtcaggctggcatc
ctttgcagatccactataccctggctgcctctcctctggctcagcaggct
tgaggttgacataagttggcaagttgtctatacatcactacacaccacct
tccagaggtggcaggaagggctctgtttttctactccttggacaattgct
cttgttcattgatgtaggccagaagttctcgacccgtgggtcacagtttg
cttttgggggtcagatatcagatagttattttctgatacataacataaca
aattacaggtatgaaatagcaatgaagttattttattgttgggagtaaca
caaggtgaagaactgcaaagggtcgcggcttaggacgctgaggaccctgg
tgtaaacggctgatacctgagaaacctgggtcat
gaattcagagagtggggtgcacactccccaccccataagcctttctgagg
aaacaccatcacccaaaattgtgattcctcaaagttcacgtacaccagta
gctaaggaaactgttgaaaccccgtgcttcgtgccgtttccagtttcctg
ctgacaatacctgacgggggcgtagtaatggattccctccaaaggtctct
gctcttatcaagaagaaagccaagcctcaccctatcatatgcagccccta
ggtgcccctccttggtatatggctgggtgtcacagctggtatgtggtcac
cagctgcctactactgtgtggcacaggttgtcttccagacagtgcctggc
tgcaggttgtggctgcggtctggatgtgggagcaggggtgctgggccgcc
tcctccagtggttgctgttgtgtgctccgcctgtggtttggaatctgttg
gccaacattgcttgaatcgtccttgtctttctagatcttccatccgagac
tccaaggagcccagaacagataatacctgagccacgcccatcttctatgc
cagagcagggacccagcccagggctagataacttctgccaaggcaaagct
gatggggtctaccccaaccctggagacgagtccacttactacaactgtgg
aggagggcggctgttccagcagagctgtcctccaggcctggtgtttagag
cctcttgcaaatgttgtacctggagctaagttcctggaaccccatccaac
tccagtctgaggccaggcttggggtcccccaccacctgcctctgctttcc
ctggggcctgcaggcctctctgttctttccatgccccccacctctgatca
gcttcttggtttcctttttgtctcttttaggctcctctttatctgaaaaa
taacatattttcaccccctgacattgtgacttaaagatactctctcatga
cagtgttttgttggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136206546_136207584
seq2: B6Ng01-052O18.b_46_1079 (reverse)

seq1  ATGACCCAGGTCTACTCAGGTATCAGCTGTCTACACCAGGGGTCCTCAGG  50
      ||||||||||| | ||||||||||||| || ||||||| ||||||||| |
seq2  ATGACCCAGGT-TTCTCAGGTATCAGCCGTTTACACCA-GGGTCCTCA-G  47

seq1  CGTCCTAATGCAGCGACCCTTTGCAGTTCTTCACCTTGTGGTGACTCCCA  100
      |||||||| || ||||||||||||||||||||||||||| || |||||||
seq2  CGTCCTAA-GCCGCGACCCTTTGCAGTTCTTCACCTTGT-GTTACTCCCA  95

seq1  ACCATAAAATAACTTCATTGCTATTTCATAACTGTAATTTGTTATTGTTA  150
      || ||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  ACAATAAAATAACTTCATTGCTATTTCATACCTGTAATTTGTTA-TGTTA  144

seq1  TGTATCATAATATAACTATCTGATATCTGACCCCC-AAAGC-AACTGTGA  198
      ||||||| || |||||||||||||||||||||||| ||||| ||||||||
seq2  TGTATCAGAAAATAACTATCTGATATCTGACCCCCAAAAGCAAACTGTGA  194

seq1  CCCACGGGTCGAGAACTTCTGGCCTACATCAATGAACAAGAGCAATTGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGGGTCGAGAACTTCTGGCCTACATCAATGAACAAGAGCAATTGTC  244

seq1  CAAGGAGTAAGAAAAACAGAGCCCTTCCTGCCACCTCTGGAAGGTGGTGT  298
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGT-AGAAAAACAGAGCCCTTCCTGCCACCTCTGGAAGGTGGTGT  293

seq1  GTAGTGATGTATAGACAACTTGCCAACTTATGTCAACCTCAAGCCTGCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATGTATAGACAACTTGCCAACTTATGTCAACCTCAAGCCTGCTG  343

seq1  AGCCAGAGGAGAGGCAGCCAGGGTATAGTGGATCTGCAAAGGATGCCAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGGAGAGGCAGCCAGGGTATAGTGGATCTGCAAAGGATGCCAGC  393

seq1  CTGACTCTGGGGAATGGCTAGCTTCGAAGTCCAGAGAATGACTGAATGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTGGGGAATGGCTAGCTTCGAAGTCCAGAGAATGACTGAATGTT  443

seq1  GGCTGAAGGCTAGGGGAGAAAAAAAAGCACAGAGTAGCCTGTACTTGAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGGCTAGGGGAGAAAAAAAAGCACAGAGTAGCCTGTACTTGAAT  493

seq1  AGCCAGTGTGCTTCCCCAAAGGCCAGGTCATCACTTGGGCAATTCTCCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGTGCTTCCCCAAAGGCCAGGTCATCACTTGGGCAATTCTCCAG  543

seq1  GTCCTTTATTAATGTTCCCACTCATGATGTCACTCGCCTCAAGAAGACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTATTAATGTTCCCACTCATGATGTCACTCGCCTCAAGAAGACTG  593

seq1  CACTACAAGGCATTACCTCTACAGACAGCAAACAGGGACAGTTCAGTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAAGGCATTACCTCTACAGACAGCAAACAGGGACAGTTCAGTTTT  643

seq1  GATAGCAACCCTCAAACACCTTTCCCATATCCTGCTAGATGTTTTCACAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAACCCTCAAACACCTTTCCCATATCCTGCTAGATGTTTTCACAT  693

seq1  TGAGCTGTTCTGTTTTAAAAGGAAACTGCACATGCTGATATATGTAAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTTCTGTTTTAAAAGGAAACTGCACATGCTGATATATGTAAAAT  743

seq1  TGTACACCGAATAGAATATGTTTATTATCAAGCAGACAAATGAAGTTATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACCGAATAGAATATGTTTATTATCAAGCAGACAAATGAAGTTATC  793

seq1  CTCTATAGTCCGCATCCAAGTGCAGAACTAGGAGAGCCTCTGCCCTTTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAGTCCGCATCCAAGTGCAGAACTAGGAGAGCCTCTGCCCTTTCT  843

seq1  TTCCCCTGCGTCCTGCTCCCCACTGCCTGCCCACACACAGTTGCTATACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGCGTCCTGCTCCCCACTGCCTGCCCACACACAGTTGCTATACC  893

seq1  CAACTGTCTACCATCCTTCTACTACAAGAAAGAAGGCATTAGCCTGGTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCTACCATCCTTCTACTACAAGAAAGAAGGCATTAGCCTGGTGG  943

seq1  TGGTGGCTCATGCCTTTAATCCCAACACTTAATGGGAAGAGGCAGGTGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCATGCCTTTAATCCCAACACTTAATGGGAAGAGGCAGGTGGA  993

seq1  TCTCTGAGTTCAAAGGACAGTCTGGTCTATGGAGTGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTTCAAAGGACAGTCTGGTCTATGGAGTGAATTC  1034

seq1: chr1_136047197_136048166
seq2: B6Ng01-052O18.g_68_1037

seq1  GAATTCAGAGAGTGGGGTGCACACTCCCCACCCCATAAGCCTTTCTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGTGGGGTGCACACTCCCCACCCCATAAGCCTTTCTGAGG  50

seq1  AAACACCATCACCCAAAATTGTGATTCCTCAAAGTTCACGTACACCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCATCACCCAAAATTGTGATTCCTCAAAGTTCACGTACACCAGTA  100

seq1  GCTAAGGAAACTGTTGAAACCCCGTGCTTCGTGCCGTTTCCAGTTTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGAAACTGTTGAAACCCCGTGCTTCGTGCCGTTTCCAGTTTCCTG  150

seq1  CTGACAATACCTGACGGGGGCGTAGTAATGGATTCCCTCCAAAGGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATACCTGACGGGGGCGTAGTAATGGATTCCCTCCAAAGGTCTCT  200

seq1  GCTCTTATCAAGAAGAAAGCCAAGCCTCACCCTATCATATGCAGCCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTATCAAGAAGAAAGCCAAGCCTCACCCTATCATATGCAGCCCCTA  250

seq1  GGTGCCCCTCCTTGGTATATGGCTGGGTGTCACAGCTGGTATGTGGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCCTCCTTGGTATATGGCTGGGTGTCACAGCTGGTATGTGGTCAC  300

seq1  CAGCTGCCTACTACTGTGTGGCACAGGTTGTCTTCCAGACAGTGCCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCTACTACTGTGTGGCACAGGTTGTCTTCCAGACAGTGCCTGGC  350

seq1  TGCAGGTTGTGGCTGCGGTCTGGATGTGGGAGCAGGGGTGCTGGGCCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTGTGGCTGCGGTCTGGATGTGGGAGCAGGGGTGCTGGGCCGCC  400

seq1  TCCTCCAGTGGTTGCTGTTGTGTGCTCCGCCTGTGGTTTGGAATCTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGTGGTTGCTGTTGTGTGCTCCGCCTGTGGTTTGGAATCTGTTG  450

seq1  GCCAACATTGCTTGAATCGTCCTTGTCTTTCTAGATCTTCCATCCGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATTGCTTGAATCGTCCTTGTCTTTCTAGATCTTCCATCCGAGAC  500

seq1  TCCAAGGAGCCCAGAACAGATAATACCTGAGCCACGCCCATCTTCTATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAGCCCAGAACAGATAATACCTGAGCCACGCCCATCTTCTATGC  550

seq1  CAGAGCAGGGACCCAGCCCAGGGCTAGATAACTTCTGCCAAGGCAAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGGGACCCAGCCCAGGGCTAGATAACTTCTGCCAAGGCAAAGCT  600

seq1  GATGGGGTCTACCCCAACCCTGGAGACGAGTCCACTTACTACAACTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGTCTACCCCAACCCTGGAGACGAGTCCACTTACTACAACTGTGG  650

seq1  AGGAGGGCGGCTGTTCCAGCAGAGCTGTCCTCCAGGCCTGGTGTTTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCGGCTGTTCCAGCAGAGCTGTCCTCCAGGCCTGGTGTTTAGAG  700

seq1  CCTCTTGCAAATGTTGTACCTGGAGCTAAGTTCCTGGAACCCCATCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCAAATGTTGTACCTGGAGCTAAGTTCCTGGAACCCCATCCAAC  750

seq1  TCCAGTCTGAGGCCAGGCTTGGGGTCCCCCACCACCTGCCTCTGCTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTGAGGCCAGGCTTGGGGTCCCCCACCACCTGCCTCTGCTTTCC  800

seq1  CTGGGGCCTGCAGGCCTCTCTGTTCCTTCCATG-CCCCCACCTCTGATCA  849
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  CTGGGGCCTGCAGGCCTCTCTGTTCTTTCCATGCCCCCCACCTCTGATCA  850

seq1  GCTTCTTGGTTTCCTTTTTGTCTCTTTTAGGCTTCCTCTTTATCTGAAAA  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTTCTTGGTTTCCTTTTTGTCTCTTTTAGGC-TCCTCTTTATCTGAAAA  899

seq1  ATAAACATATTTTTCACCCCTGACATTGTGACTTAAAGAAGCTCTCTCAG  949
      || ||||||||||   |||||||||||||||||||||||  |||||||| 
seq2  AT-AACATATTTTCACCCCCTGACATTGTGACTTAAAGATACTCTCTCAT  948

seq1  GACAGTG-TTTGTTGGGGGGGG  970
      ||||||| |||||||||| |||
seq2  GACAGTGTTTTGTTGGGGTGGG  970