BAC Information

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BAC

Clone NameB6Ng01-053F08
Chromosome13 (Build37)1 (Build37)
Map Location 106,254,662 - 106,255,81269,709,905 - 69,710,748
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAdamts6, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a
Downstream geneEG668025, Olfr717-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053F08.bB6Ng01-053F08.g
ACCDH876412DH876413
length1,139883
definitionDH876412|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F08, 5' end.DH876413|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,254,662 - 106,255,812)(69,709,905 - 69,710,748)
sequence
gaattctgctaatggagctgtggggagactgaaatacaacaaggaatatc
agctttctgtgattttattttctctgcaaatttcaagccatacatcctct
tgcagatgtcaaacaatgacttcatgacagaatgccactagttatgacag
aaatttagtgagaaatgaagacaccgatgcttggtaacagtagcgttaat
ctggaattaaggtactaataatattcagtgaatctggaattgaattctac
tggctcatctttccaaactgagtcttactgaattgttgctatttttatct
agaaaagtaactttaagctctaacttggagattataatattataaaattg
tactttctgttttaatggttgaggaattaattgtaaatgaaatacagatg
tatatacttatatttatgcacacttatatttaaatgtttcctaaccagat
ttactagcctttgacaaagaatgcaccttgtgcagctgtaaatgtttcct
gaaattgatcactgacagagctacagagaatgctcagttagttagcctgc
tgcccaagcctggagacctgggttcagtggattcctagaatacaatctgg
gcatggcaacttgctcctgtaacaacagtgttagagggcagagacaggca
ggtcctgaagcccattggccaaccacctcgccaactcaatgtatctcaac
ttcagtgagatcctatctcaaaagtagaaacaactaaaaggaaagaaatt
aaagttagatattaatcaaggaaagtagtgacacatgaaactgaagaaga
acgaagaccaaagtgtggacactttgccccttcttagaattggaaacaat
cgtccatggaaggagttacaaagtttggagctgagacaaaaggatggacc
atctagagactgccatatccaggatccatccataattagtctccaaacga
tgacaccattgcatacactagcaagcatttgctgaaaggccctgatatag
ctgtctcttgtgggactatgccggggcctagcaacacataagtggatgct
tacagtcagctatggaatgatcacagtccgcatggaagagctagaaaaag
tatcagagctaaagagatctgcacatctgtaggtcaaca
gaattccagggagggaagatagtagtgggtgggtgggtgggggactccac
agcctgcactgtattgatctgaatacgggaccaagatcatatgggagaga
cacggtggtaaaatgccttgtcttgtggctttaacagcctgttgctttct
cccatcccatttacctgtgtgtttgctttatttataacacagagtgggta
cttggatgctctggaccacatcaggcgacaaagaatatatttatttttct
gaattgattgctataatatttagaatatgcttatgtgttaaaaagcaaac
aaaaagccaagtttactctctctaaatttcaccctcacaaatctgttttt
tcacaaacccattttgttaattttacaagggtatttagctttcctatttg
attttatattatacttaatagtattttaattattatggttgattatcatt
gtaatttaatggtcttatagtacttacgaaagtaaatgctttattacaac
aatctaatctcatttctttagttcctagaatgtttggaaatacactttaa
aagaaagttagttaattctatgagaaataccccattacactttaggaaat
cgaatgttctcactcacagttttgattagaacatgaaaacatgcatatta
tagactctaaactaccatattttgggttggattacctattttcattatgt
gaccattgcccatcctgactcaaataatgagttcagagtgggattagctg
tctgtctcgaggtggtggtatacgaggttataacactcattgtttcacac
ttttgcacattgttatctagtgattaatgaatgctggtggaacatttgat
gcgaattttcttttgaaagttgtgctattcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106254662_106255812
seq2: B6Ng01-053F08.b_46_1184

seq1  GAATTCTGCTAATGGAGCTGTGGGGAGACTGAAATACAACAAGGAATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTAATGGAGCTGTGGGGAGACTGAAATACAACAAGGAATATC  50

seq1  AGCTTTCTGTGATTTTATTTTCTCTGCAAATTTCAAGCCATACATCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTGTGATTTTATTTTCTCTGCAAATTTCAAGCCATACATCCTCT  100

seq1  TGCAGATGTCAAACAATGACTTCATGACAGAATGCCACTAGTTATGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGTCAAACAATGACTTCATGACAGAATGCCACTAGTTATGACAG  150

seq1  AAATTTAGTGAGAAATGAAGACACCGATGCTTGGTAACAGTAGCGTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGTGAGAAATGAAGACACCGATGCTTGGTAACAGTAGCGTTAAT  200

seq1  CTGGAATTAAGGTACTAATAATATTCAGTGAATCTGGAATTGAATTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTAAGGTACTAATAATATTCAGTGAATCTGGAATTGAATTCTAC  250

seq1  TGGCTCATCTTTCCAAACTGAGTCTTACTGAATTGTTGCTATTTTTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATCTTTCCAAACTGAGTCTTACTGAATTGTTGCTATTTTTATCT  300

seq1  AGAAAAGTAACTTTAAGCTCTAACTTGGAGATTATAATATTATAAAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTAACTTTAAGCTCTAACTTGGAGATTATAATATTATAAAATTG  350

seq1  TACTTTCTGTTTTAATGGTTGAGGAATTAATTGTAAATGAAATACAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTGTTTTAATGGTTGAGGAATTAATTGTAAATGAAATACAGATG  400

seq1  TATATACTTATATTTATGCACACTTATATTTAAATGTTTCCTAACCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTTATATTTATGCACACTTATATTTAAATGTTTCCTAACCAGAT  450

seq1  TTACTAGCCTTTGACAAAGAATGCACCTTGTGCAGCTGTAAATGTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGCCTTTGACAAAGAATGCACCTTGTGCAGCTGTAAATGTTTCCT  500

seq1  GAAATTGATCACTGACAGAGCTACAGAGAATGCTCAGTTAGTTAGCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGATCACTGACAGAGCTACAGAGAATGCTCAGTTAGTTAGCCTGC  550

seq1  TGCCCAAGCCTGGAGACCTGGGTTCAGTGGATTCCTAGAATACAATCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGCCTGGAGACCTGGGTTCAGTGGATTCCTAGAATACAATCTGG  600

seq1  GCATGGCAACTTGCTCCTGTAACAACAGTGTTAGAGGGCAGAGACAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCAACTTGCTCCTGTAACAACAGTGTTAGAGGGCAGAGACAGGCA  650

seq1  GGTCCTGAAGCCCATTGGCCAACCACCTCGCCAACTCAATGTATCTCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAAGCCCATTGGCCAACCACCTCGCCAACTCAATGTATCTCAAC  700

seq1  TTCAGTGAGATCCTATCTCAAAAGTAGAAACAACTAAAAGGAAAGAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGAGATCCTATCTCAAAAGTAGAAACAACTAAAAGGAAAGAAATT  750

seq1  AAAGTTAGATATTAATCAAGGAAAGTAGTGACACATGAAACTGAAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGATATTAATCAAGGAAAGTAGTGACACATGAAACTGAAGAAGA  800

seq1  ACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAAACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAAACAAT  850

seq1  CGTCCATGGAAGGAGTTACAAAGTTTGGAGCTGAGACAAAAGGATGGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCATGGAAGGAGTTACAAAGTTTGGAGCTGAGACAAAAGGATGGACC  900

seq1  ATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATTAGTCTCCAAAC  950
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  ATCTAGAGACTGCCATATCCA-GGATCCAT-CCATAATTAGTCTCCAAAC  948

seq1  GATGACACCATTGCATACACTAGCAAGCATTTGCTGAAAGGGCCCTGATA  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATGACACCATTGCATACACTAGCAAGCATTTGCTGAAA-GGCCCTGATA  997

seq1  TAGCTGTCTCTTGTGGGACTATGCCGGGGCCTAGCAAACACATAAGTGGA  1050
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGCTGTCTCTTGTGGGACTATGCCGGGGCCTAGC-AACACATAAGTGGA  1046

seq1  TGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCT  1100
      |||| ||||||||||| ||||  ||||||||    ||  ||||| |||||
seq2  TGCTTACAGTCAGCTA-TGGAATGATCACAG---TCCGCATGGAAGAGCT  1092

seq1  AGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACTCTGTAGGTGCAAC  1150
      ||| ||||||||    ||||||||||||||||||  ||||||||| ||||
seq2  AGAAAAAGTATC---AGAGCTAAAGAGATCTGCACATCTGTAGGT-CAAC  1138

seq1  A  1151
      |
seq2  A  1139

seq1: chr1_69709905_69710748
seq2: B6Ng01-053F08.g_112_951 (reverse)

seq1  CAAGAAAGGCACAACTTTCCAAAAGAAAA-TCCCATCACGCTGGTTCCAC  49
      ||||||  |||||||||| |||||||||| || |||||     |||||| 
seq2  CAAGAATAGCACAACTTT-CAAAAGAAAATTCGCATCA--AATGTTCCA-  46

seq1  CCAGCATTCCTTAATCACTAGATAACAATGTGTAAAAGTACTAAACAATT  99
      ||||||||| |||||||||||||||||||||| ||||||   ||||||| 
seq2  CCAGCATTCATTAATCACTAGATAACAATGTGCAAAAGTGTGAAACAATG  96

seq1  AGTGTCTTAATCCTCGTATACCACCACCTCCTGACAGACAGCTAATCCCA  149
      |||||  ||| |||||||||||||||||||  ||||||||||||||||||
seq2  AGTGTTATAA-CCTCGTATACCACCACCTCGAGACAGACAGCTAATCCCA  145

seq1  TTCTGAACACCTTATTTGAGCCAGGATGGGCAATGGTCACATAATGAAAA  199
       ||||||| | ||||||||| |||||||||||||||||||||||||||||
seq2  CTCTGAACTCATTATTTGAGTCAGGATGGGCAATGGTCACATAATGAAAA  195

seq1  TAGGTAATCCAACCC-AAATATGGTAGTTTAGAGTCTATAATATGCATGT  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAGGTAATCCAACCCAAAATATGGTAGTTTAGAGTCTATAATATGCATGT  245

seq1  TTTCATGTTCTAATCAAAACTTTGAGTTATATACATTCGATTTCCTAAAG  298
      ||||||||||||||||||||| ||||| | | ||||||||||||||||||
seq2  TTTCATGTTCTAATCAAAACTGTGAGTGAGA-ACATTCGATTTCCTAAAG  294

seq1  TGTAATGGGGTATTTCTCATAGAATTAACTAACTTTTTTTTAAAGTGTAT  348
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTAATGGGGTATTTCTCATAGAATTAACTAACTTTCTTTTAAAGTGTAT  344

seq1  TTCCAAACATTCTAGGAACTAAAGAAATGAGATTTGATTGTTGTTATAAA  398
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  TTCCAAACATTCTAGGAACTAAAGAAATGAGATTAGATTGTTGTAATAAA  394

seq1  GCATTTACTTTCCTAAGTACTATAAGACCATTAAATTACAATGATAATCA  448
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCATTTACTTTCGTAAGTACTATAAGACCATTAAATTACAATGATAATCA  444

seq1  ACCATAATAATTAAAATACTATTAAGTATAATATAAAATCAAATAGGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAATAATTAAAATACTATTAAGTATAATATAAAATCAAATAGGAAA  494

seq1  GCTAAATACCATTGTAAAATTAACAAAATGGGTTTGTGAAAAAACAGATT  548
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATACCCTTGTAAAATTAACAAAATGGGTTTGTGAAAAAACAGATT  544

seq1  TGTGAGGGTGAAATTTAGAGAGAGTAAACTTGGCTTTTTGTTTGCTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGTGAAATTTAGAGAGAGTAAACTTGGCTTTTTGTTTGCTTTTT  594

seq1  AACACATAAGCATATTCTAAATATTATAGCAATCAATTCAGAAAAATAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAAGCATATTCTAAATATTATAGCAATCAATTCAGAAAAATAAA  644

seq1  TATATTCTTTGTCGCCTGATGTGGTCCAGAGCATCCAAGTACCCACTCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTTTGTCGCCTGATGTGGTCCAGAGCATCCAAGTACCCACTCTG  694

seq1  TGTTATAAATAAAGCAAACACACAGGTAAATGGGATGGGAGAAAGCAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAATAAAGCAAACACACAGGTAAATGGGATGGGAGAAAGCAACA  744

seq1  GGCTGTTAAAGCCACAAGACAAGGCATTTTACCACCGTGTCTCTCCCATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTAAAGCCACAAGACAAGGCATTTTACCACCGTGTCTCTCCCATA  794

seq1  TGATCTTGGTCCTGTATACAGATCAATACAGTGCAGGCTTTGGAGT  844
      |||||||||||| |||| ||||||||||||||||||||| ||||||
seq2  TGATCTTGGTCCCGTATTCAGATCAATACAGTGCAGGCTGTGGAGT  840