BAC Information

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BAC

Clone NameB6Ng01-054A09
Chromosome1 (Build37)
Map Location 37,650,576 - 37,806,071
singlet/doubletdoublet
Overlap gene2010300C02Rik
Upstream geneBC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a
Downstream geneTsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054A09.bB6Ng01-054A09.g
ACCDH876893DH876894
length1,1241,123
definitionDH876893|Mus musculus domesticus DNA, BAC clone: B6Ng01-054A09, 5' end.DH876894|Mus musculus domesticus DNA, BAC clone: B6Ng01-054A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,650,576 - 37,651,564)(37,804,932 - 37,806,071)
sequence
gaattcagatcccccgtacccatgcacaaagctaggcacagcagcattac
agcaggaggcgaacatgggaccactgggactggctggccagcaggtcttg
ataaattggtgaatttcaggttcggtgagtgtctttacttttctgttgct
gtgaagagataccatgaccaaaataacttatagagttaattaggactcac
agttccagggccttagagtccaggaaggcaggcatggcattgtagcagta
gctgagagctcacatcttgctctaaaggcatgagtcagaaagatcgacag
agttaactagaaatggcatgggctttttttaaagcccaacccagtgacct
cctccaatgaggtcacaccccctcatccttcccaaacagttccaccaact
ggtagccaataattcaaacatatgagtgtatgggggccattctcattcaa
accaacactgtgagagaccctgcctcaaaaattcagttggagaataatag
agaagtatactggatattgacctctgagatctactctcctctctgcataa
gcgcgcgcgcacacacacacgcacacacacacacacacaattacatacat
gcatacacaatgaatgtttgcatacatacatgaatgtgtgaatgcacaca
caatgtaagatgaaccctggagagttattgagaagaaatagttatgtcag
ttaggcaattttctctgtcttcacaatttttacaaaggaattagaagaaa
ctacataaaattaacaaatcaagaaatgtgggggacactcaaaagataga
ggctgaagggtcaagaatttaaagccagcctcacaagaccagcctgggtt
tcgtgagacattattgctaaaaatggaggagggaagatggggagggagga
agaacagaaaggttcagattacaataatattctaatatggggttagaaac
tttgctatctcccccatccacccccctctccctctaagacctgatactaa
tctgttgatctgaaccctcaatcctcctacctctgtctccactgcaagga
taccaacatcctcccgggttaatattcacttttaaaacatatcaaccctg
gccctgggcctgccttcctgcttt
gaattctaaccaggggactgatttgcatttttgatgaatcacttgatatg
gggatggtctagactacaagccctaaaacagaaacagtgggaatggaggc
atgcagctgatcacagagatatttaggagctactatggggaaggtaaggg
gagggcctctgctattggtttcacagttgctggtgcaggcacctgtggac
gttccatttgccacaatgatgaacagaaggaagggatgagcacacattct
caaaggaactgcactcactccaggctgtcctgtctctctggcagctctca
gattctttggtctctcccttaagtggtagccttttataagggatctattt
tagacactccttccttgtaatttgtcccagagatctcattccattcctta
gctttaattgccatcctcgacctggtgacttatttctgtttccagacttg
atctttctcttgagaccatatctcaaagtgcctacttaatctctcccccc
aaatatttgggttctggtgcagtataccaaaaatccagcaagcaccgttt
cctcccagcatcctctgttcttgctctccagaatgccactaatcatgatc
ttgacttttaaggccagttgtcattcccacaaaacgtccttccttgttag
ctacaggagttagcccaaatatcacatcatcctaacaaacattcctgaaa
gaaatgaatgcctaagtagatgagaagaaagcctgagctcgtggattaag
aggcctgaggttgctaatatgggaaaatctccccaaagccacccacaggt
tagatgtaacaagagcaaaaccctcaatggtgttcttttattgaaatgag
accttgatccaaaatttatgtggagtttgagaggccaaggaaagtcaaat
agtttctaaatagaaaagtgaagttggagggttcatatttcagatttcaa
tttttctttggagtagtcaaacaattggctttaagatgaatatacaggtc
aagggcaaagaattagagtgtaaacaaactcataaatctaggatcagtgg
ttcggtgcaggcaccaggccattcctagtagaaagacatttctagaattc
catagcaccaggactttctgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37650576_37651564
seq2: B6Ng01-054A09.b_183_1153

seq1  AAGAGATACCATGACCAAAATAACTTATAGAGTTAATTAGGACTCACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATACCATGACCAAAATAACTTATAGAGTTAATTAGGACTCACAGT  50

seq1  TCCAGGGCCTTAGAGTCCAGGAAGGCAGGCATGGCATTGTAGCAGTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCCTTAGAGTCCAGGAAGGCAGGCATGGCATTGTAGCAGTAGCT  100

seq1  GAGAGCTCACATCTTGCTCTAAAGGCATGAGTCAGAAAGATCGACAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTCACATCTTGCTCTAAAGGCATGAGTCAGAAAGATCGACAGAGT  150

seq1  TAACTAGAAATGGCATGGGCTTTTTTTAAAGCCCAACCCAGTGACCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGAAATGGCATGGGCTTTTTTTAAAGCCCAACCCAGTGACCTCCT  200

seq1  CCAATGAGGTCACACCCCCTCATCCTTCCCAAACAGTTCCACCAACTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGGTCACACCCCCTCATCCTTCCCAAACAGTTCCACCAACTGGT  250

seq1  AGCCAATAATTCAAACATATGAGTGTATGGGGGCCATTCTCATTCAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATAATTCAAACATATGAGTGTATGGGGGCCATTCTCATTCAAACC  300

seq1  AACACTGTGAGAGACCCTGCCTCAAAAATTCAGTTGGAGAATAATAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTGAGAGACCCTGCCTCAAAAATTCAGTTGGAGAATAATAGAGA  350

seq1  AGTATACTGGATATTGACCTCTGAGATCTACTCTCCTCTCTGCATAAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTGGATATTGACCTCTGAGATCTACTCTCCTCTCTGCATAAGCG  400

seq1  CGCGCGCACACACACACGCACACACACACACACACAATTACATACATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCGCACACACACACGCACACACACACACACACAATTACATACATGCA  450

seq1  TACACAATGAATGTTTGCATACATACATGAATGTGTGAATGCACACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATGAATGTTTGCATACATACATGAATGTGTGAATGCACACACAA  500

seq1  TGTAAGATGAACCCTGGAGAGTTATTGAGAAGAAATAGTTATGTCAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATGAACCCTGGAGAGTTATTGAGAAGAAATAGTTATGTCAGTTA  550

seq1  GGCAATTTTCTCTGTCTTCACAATTTTTACAAAGGAATTAGAAGAAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTTTCTCTGTCTTCACAATTTTTACAAAGGAATTAGAAGAAACTA  600

seq1  CATAAAATTAACAAATCAAGAAATGTGGGGGACACTCAAAAGATAGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTAACAAATCAAGAAATGTGGGGGACACTCAAAAGATAGAGGC  650

seq1  TGAAGGGTCAAGAATTTAAAGCCAGCCTCACAAGACCAGCCTGGGTTTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTCAAGAATTTAAAGCCAGCCTCACAAGACCAGCCTGGGTTTCG  700

seq1  TGAGACATTATTGCTAAAAAATGGAGGAGGGAAGAT-GGGAGGAAGGAAG  749
      ||||||||||||||| |||||||||||||||||||| |||||| ||||||
seq2  TGAGACATTATTGCT-AAAAATGGAGGAGGGAAGATGGGGAGGGAGGAAG  749

seq1  AACAAGAAAGATTCAGAATTACAATAATATTCTAATTATGGGGTTAGAGA  799
      ||| |||||| ||||| |||||||||||||||||| |||||||||||| |
seq2  AAC-AGAAAGGTTCAG-ATTACAATAATATTCTAA-TATGGGGTTAGAAA  796

seq1  CTTTGCTATCTCCCCCATCCCACCCCCCTCTCACCTCTCAAGACCTTGAT  849
      |||||||||||||||||| ||||||||||||| ||||| |||||| ||||
seq2  CTTTGCTATCTCCCCCAT-CCACCCCCCTCTC-CCTCT-AAGACC-TGAT  842

seq1  ACATAATCTAGTTTGATCTGAAACCCTCAATTCTCCTACCTCTGTCTTCC  899
      || ||||||   |||||||| |||||||||| |||||||||||||||  |
seq2  AC-TAATCT--GTTGATCTG-AACCCTCAATCCTCCTACCTCTGTCT--C  886

seq1  AACTGCCAGGATTACAGACATCCTCCCGGTTTTAATTTTTCACTTTTTAT  949
       ||||| |||| |||  |||||||||||| ||  | | ||||| ||||| 
seq2  CACTGCAAGGA-TACCAACATCCTCCCGGGTT--AATATTCAC-TTTTAA  932

seq1  AACTCATCAAACTCTGGCCCATGGGCTGCCTTCCTGCTTT  989
      |||  ||| ||| |||||||  || |||||||||||||||
seq2  AACATATC-AACCCTGGCCCTGGGCCTGCCTTCCTGCTTT  971

seq1: chr1_37804932_37806071
seq2: B6Ng01-054A09.g_66_1188 (reverse)

seq1  GGACAGAAAAGTCCTGGTGCTATGGGATGTCTATGAAATGTCTTTCTACT  50
      |||||| |||||||||||||||||| || |||| ||||||||||||||||
seq2  GGACAG-AAAGTCCTGGTGCTATGGAAT-TCTA-GAAATGTCTTTCTACT  47

seq1  ATGGGATGGGCTTGGTGCCTGCACTGAAAACCCACTGATCCTAGATGTAT  100
      |  |||  ||| |||||||||||| |||   ||||||||||||||| |||
seq2  A--GGAATGGCCTGGTGCCTGCACCGAA---CCACTGATCCTAGATTTAT  92

seq1  GGGTTTTGTTTTACACTCTAAATTCTATGCCCTTGACCTGTATATTCATC  150
      | ||||   |||||||||| |||||| |||||||||||||||||||||||
seq2  GAGTTT--GTTTACACTCT-AATTCTTTGCCCTTGACCTGTATATTCATC  139

seq1  TTAAAGCCAATTGTTTGACTACTCCAAAGAAAAATTTGAAATCTGGAAAT  200
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  TTAAAGCCAATTGTTTGACTACTCCAAAGAAAAA-TTGAAATCT-GAAAT  187

seq1  ATGAACCCTCCAACTTCACTTTTCTATTTTAGAAACTATTTTGACTTTCC  250
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  ATGAACCCTCCAACTTCACTTTTCTA-TTTAGAAACTA-TTTGACTTTCC  235

seq1  TTGGCCTCTCAAAACTCCACATAAAATTTTGGATCAAGGTCTCATTTCAA  300
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TTGGCCTCTC-AAACTCCACAT-AAATTTTGGATCAAGGTCTCATTTCAA  283

seq1  TAAAAGAACACCATTGAGGGTTTTGCTCTTGTTACATCTAACCTGTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAACACCATTGAGGGTTTTGCTCTTGTTACATCTAACCTGTGGGT  333

seq1  GGCTTTGGGGAGATTTTCCCATATTAGCAACCTCAGGCCTCTTAATCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGGGAGATTTTCCCATATTAGCAACCTCAGGCCTCTTAATCCAC  383

seq1  GAGCTCAGGCTTTCTTCTCATCTACTTAGGCATTCATTTCTTTCAGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGGCTTTCTTCTCATCTACTTAGGCATTCATTTCTTTCAGGAAT  433

seq1  GTTTGTTAGGATGATGTGATATTTGGGCTAACTCCTGTAGCTAACAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAGGATGATGTGATATTTGGGCTAACTCCTGTAGCTAACAAGGA  483

seq1  AGGACGTTTTGTGGGAATGACAACTGGCCTTAAAAGTCAAGATCATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGTTTTGTGGGAATGACAACTGGCCTTAAAAGTCAAGATCATGATT  533

seq1  AGTGGCATTCTGGAGAGCAAGAACAGAGGATGCTGGGAGGAAACGGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCATTCTGGAGAGCAAGAACAGAGGATGCTGGGAGGAAACGGTGCT  583

seq1  TGCTGGATTTTTGGTATACTGCACCAGAACCCAAATATTTGGGGGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGATTTTTGGTATACTGCACCAGAACCCAAATATTTGGGGGGAGAG  633

seq1  ATTAAGTAGGCACTTTGAGATATGGTCTCAAGAGAAAGATCAAGTCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTAGGCACTTTGAGATATGGTCTCAAGAGAAAGATCAAGTCTGGA  683

seq1  AACAGAAATAAGTCACCAGGTCGAGGATGGCAATTAAAGCTAAGGAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATAAGTCACCAGGTCGAGGATGGCAATTAAAGCTAAGGAATGG  733

seq1  AATGAGATCTCTGGGACAAATTACAAGGAAGGAGTGTCTAAAATAGATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCTCTGGGACAAATTACAAGGAAGGAGTGTCTAAAATAGATCC  783

seq1  CTTATAAAAGGCTACCACTTAAGGGAGAGACCAAAGAATCTGAGAGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAAGGCTACCACTTAAGGGAGAGACCAAAGAATCTGAGAGCTGC  833

seq1  CAGAGAGACAGGACAGCCTGGAGTGAGTGCAGTTCCTTTGAGAATGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACAGGACAGCCTGGAGTGAGTGCAGTTCCTTTGAGAATGTGTG  883

seq1  CTCATCCCTTCCTTCTGTTCATCATTGTGGCAAATGGAACGTCCACAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCTTCCTTCTGTTCATCATTGTGGCAAATGGAACGTCCACAGGT  933

seq1  GCCTGCACCAGCAACTGTGAAACCAATAGCAGAGGCCCTCCCCTTACCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCACCAGCAACTGTGAAACCAATAGCAGAGGCCCTCCCCTTACCTT  983

seq1  CCCCATAGTAGCTCCTAAATATCTCTGTGATCAGCTGCATGCCTCCATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGTAGCTCCTAAATATCTCTGTGATCAGCTGCATGCCTCCATTC  1033

seq1  CCACTGTTTCTGTTTTAGGGCTTGTAGTCTAGACCATCCCCATATCAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTTCTGTTTTAGGGCTTGTAGTCTAGACCATCCCCATATCAAGT  1083

seq1  GATTCATCAAAAATGCAAATCAGTCCCCTGGTTAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATCAAAAATGCAAATCAGTCCCCTGGTTAGAATTC  1123