BAC Information

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BAC

Clone NameB6Ng01-054G19
Chromosome1 (Build37)
Map Location 93,385,088 - 93,509,693
singlet/doubletdoublet
Overlap geneTraf3ip1, Asb1
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2
Downstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054G19.bB6Ng01-054G19.g
ACCDH877171DH877172
length1,0351,068
definitionDH877171|Mus musculus domesticus DNA, BAC clone: B6Ng01-054G19, 5' end.DH877172|Mus musculus domesticus DNA, BAC clone: B6Ng01-054G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,385,088 - 93,386,143)(93,508,620 - 93,509,693)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcaaaaaaac
aaaaacaaaaaacaaaaaactaaaaaatcccaaacaaccaaaaaaacaaa
aacaaaacaaaacaaacaaacaaaaaaagatgtgcaaacttggcaagaca
ttctagaacggctggcagaagaggtgacctctgggccttcttcagtattc
tgaagtaggtcacaaacacagcattcggagtctctgtgtgcagtttcagc
tttctctcagtgctctctgaagcttcagcctcccaaagttcccattcagt
ttcttttctgctttctcccactttctttgcattcttgatagagtttttct
cttttccttgaaagccatgaacctttttggtttgttaatgtcttctgtat
cttttttcatttctacttccttgctctgcagccataaacatgtttttaac
atctctggactaacttcataacttctgcccttcccaaaaccagagatcac
tttaattataccaagagaagcttggcctaatttgtcttgtttaaagagtt
tctttactgcttcgcaacacatttcagatactggttttgacctgtcattc
atcagagggagaaccagtacaatgatgttgtcaaagctaaaatgggacag
ggccaccaacagctcacacgggttcttcactgccacttcagccagccctt
cgtaggcctttaaggccaccacattgctcttcttcaccttactttgcttc
cagactttaactatttgctccagattttccaaataaagtctatattggct
aatcagccttcaaattctcttaacttctgggtttctttaagaatcttggt
aggtttttttctttttttttttgcttcggtagaggccggatttattgagg
gagtgatgtccttaaacagctctatagtgaaataataaccaacttccgga
cagtgtcagcacatcaggtccgctcatcagcatgaatgcaactctctaag
ttttttttttttttttttttaaagacttctggatc
gaattcaatcctcagaacccacataaaaagccaggcatggcaacagtgca
ctacattcctagggctccctggttagtcagcctagcctacttagccaatg
agagaccctgtcttttaaaaaaaacaaagcagatatcccctttaaaaact
gacactcaaggttgtcttgtagtctcctcagatatccacacacacctacc
cacatacacatacacacacacacacacacacacacacacacacacacaca
cacacacacacacacatatgcatgcatgtgcccctggaacaacacacaca
cactcacactcacactcacaccaccttttaaatttaactctgaccaaacc
atgttccataacagattggaagtagatcaaaaggccagctgtgcaaaaga
aagacacacacacacagagttctaaagaatatatggttaatatgtgagac
aggtgctccctggaacaggaaccaaccacctctacctcttttactgtgcc
cagcttccagccatggcttacactaaaaaagcacctaacatgtaaccaca
gtgggtaccttattgcctcctgtcctgggactaccaatgcccagtgccag
caatggagaatgctcatcccagataagccagggccccaaaatgtgcccca
aaaggcacaggactcctttgggcttctaatgctaggacagcagcaagcca
ccagactctcccagacttcccaagaacactctcagggtcagtatctactt
tggggtcacctggttccaagcctagtttgtgatgccttaacaacatcaac
aaaagatagggcacaggtatgctaggacagtgaccagaatgtgctacctg
gatggccagacaggatctgaacttgactaaaagccactctaccatccgga
gagatcagcaaccttgtgatggggccacactcgtgcattttccctggggc
tcacaaacactctgcccggggcgagaaaacatcacaagggaccataaccc
accctaggtcaggccaggtatctgtacaaggtatcctatcaggcatcaga
agctcatggatttagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93385088_93386143
seq2: B6Ng01-054G19.b_45_1079

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAC  50

seq1  AAAAACAAAAAACAAAAAACTAAAAAATCCCAAACAACCAAAAAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAACAAAAAACTAAAAAATCCCAAACAACCAAAAAAACAAA  100

seq1  AACAAAACAAAACAAACAAACAAAAAAAGATGTGCAAACTTGGCAAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAACAAACAAAAAAAGATGTGCAAACTTGGCAAGACA  150

seq1  TTCTAGAACGGCTGGCAGAAGAGGTGACCTCTGGGCCTTCTTCAGTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAACGGCTGGCAGAAGAGGTGACCTCTGGGCCTTCTTCAGTATTC  200

seq1  TGAAGTAGGTCACAAACACAGCATTCGGAGTCTCTGTGTGCAGTTTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGGTCACAAACACAGCATTCGGAGTCTCTGTGTGCAGTTTCAGC  250

seq1  TTTCTCTCAGTGCTCTCTGAAGCTTCAGCCTCCCAAAGTTCCCATTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCAGTGCTCTCTGAAGCTTCAGCCTCCCAAAGTTCCCATTCAGT  300

seq1  TTCTTTTCTGCTTTCTCCCACTTTCTTTGCATTCTTGATAGAGTTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTGCTTTCTCCCACTTTCTTTGCATTCTTGATAGAGTTTTTCT  350

seq1  CTTTTCCTTGAAAGCCATGAACCTTTTTGGTTTGTTAATGTCTTCTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTGAAAGCCATGAACCTTTTTGGTTTGTTAATGTCTTCTGTAT  400

seq1  CTTTTTTCATTTCTACTTCCTTGCTCTGCAGCCATAAACATGTTTTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCATTTCTACTTCCTTGCTCTGCAGCCATAAACATGTTTTTAAC  450

seq1  ATCTCTGGACTAACTTCATAACTTCTGCCCTTCCCAAAACCAGAGATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGACTAACTTCATAACTTCTGCCCTTCCCAAAACCAGAGATCAC  500

seq1  TTTAATTATACCAAGAGAAGCTTGGCCTAATTTGTCTTGTTTAAAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATACCAAGAGAAGCTTGGCCTAATTTGTCTTGTTTAAAGAGTT  550

seq1  TCTTTACTGCTTCGCAACACATTTCAGATACTGGTTTTGACCTGTCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTGCTTCGCAACACATTTCAGATACTGGTTTTGACCTGTCATTC  600

seq1  ATCAGAGGGAGAACCAGTACAATGATGTTGTCAAAGCTAAAATGGGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGGAGAACCAGTACAATGATGTTGTCAAAGCTAAAATGGGACAG  650

seq1  GGCCACCAACAGCTCACACGGGTTCTTCACTGCCACTTCAGCCAGCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAACAGCTCACACGGGTTCTTCACTGCCACTTCAGCCAGCCCTT  700

seq1  CGTAGGCCTTTAAGGCCACCACATTGCTCTTCTTCACCTTACTTTGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGCCTTTAAGGCCACCACATTGCTCTTCTTCACCTTACTTTGCTTC  750

seq1  CAGACTTTAACTATTTGCTCCAGATTTTCCAAATAAAGTCTATATTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTAACTATTTGCTCCAGATTTTCCAAATAAAGTCTATATTGGCT  800

seq1  AATCAGGCCTTCAAATTCTCTTAACTTCTGGGTTTCTTTAAGAATCTTGG  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCA-GCCTTCAAATTCTCTTAACTTCTGGGTTTCTTTAAGAATCTTGG  849

seq1  TAGGTTTTTTTTTTTTTTTTTTTTTTTTTGCTTCGGTTAGAGGCCGGATT  900
      ||||      ||||||| |||||||||||||||||| ||||||||||| |
seq2  TAGG------TTTTTTTCTTTTTTTTTTTGCTTCGG-TAGAGGCCGGA-T  891

seq1  TTATATGAGGGAGTGATGTCCTTAAACAGCTCTATAGGTGAGATAATAAC  950
      |||| ||||||||||||||||||||||||||||||| |||| ||||||||
seq2  TTAT-TGAGGGAGTGATGTCCTTAAACAGCTCTATA-GTGAAATAATAAC  939

seq1  CAACTTCCGGACAGTGTCAGCCACATCAGGGTCCTGCTCCATCAGCATGG  1000
      |||||||||||||||||||| ||||||| ||||| ||| ||||||||| |
seq2  CAACTTCCGGACAGTGTCAG-CACATCA-GGTCC-GCT-CATCAGCAT-G  984

seq1  AATGCAACTTCTCTAGTTTTTTTTTTTTTTTTTTTTTTTTAATGACTTTC  1050
      |||||||| ||||||     |||||||||||||||||||||| ||| |||
seq2  AATGCAAC-TCTCTA---AGTTTTTTTTTTTTTTTTTTTTAAAGAC-TTC  1029

seq1  TGGATC  1056
      ||||||
seq2  TGGATC  1035

seq1: chr1_93508620_93509693
seq2: B6Ng01-054G19.g_65_1132 (reverse)

seq1  GGGCTAAAATCCATGAGCTTCTGATGCCTTGATAGGGGATACCTGGTACA  50
      ||||| |||||||||||||||||||||| |||||  |||||||| |||||
seq2  GGGCT-AAATCCATGAGCTTCTGATGCC-TGATA--GGATACCTTGTACA  46

seq1  GATACCTGGCCTGACCTAGGGTTGGGTAATGGTCCCTTGTGATG-TTTCT  99
      ||||||||||||||||||||| ||||| |||||||||||||||| |||||
seq2  GATACCTGGCCTGACCTAGGG-TGGGTTATGGTCCCTTGTGATGTTTTCT  95

seq1  CGGCCCCGGGCAGAGTGTTTGTGAGCCCCAGGGGAAAATGCACGAGTGTG  149
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  C-GCCCCGGGCAGAGTGTTTGTGAGCCCCA-GGGAAAATGCACGAGTGTG  143

seq1  GCCCCATCACAAGGTTGCTGATCTCTCCGGATGGTAGAGTGGCTTTTAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATCACAAGGTTGCTGATCTCTCCGGATGGTAGAGTGGCTTTTAGT  193

seq1  CAAGTTCAGATCCTGTCTGGCCATCCAGGTAGCACATTCTGGTCACTGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAGATCCTGTCTGGCCATCCAGGTAGCACATTCTGGTCACTGTC  243

seq1  CTAGCATACCTGTGCCCTATCTTTTGTTGATGTTGTTAAGGCATCACAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATACCTGTGCCCTATCTTTTGTTGATGTTGTTAAGGCATCACAAA  293

seq1  CTAGGCTTGGAACCAGGTGACCCCAAAGTAGATACTGACCCTGAGAGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTGGAACCAGGTGACCCCAAAGTAGATACTGACCCTGAGAGTGT  343

seq1  TCTTGGGAAGTCTGGGAGAGTCTGGTGGCTTGCTGCTGTCCTAGCATTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGAAGTCTGGGAGAGTCTGGTGGCTTGCTGCTGTCCTAGCATTAG  393

seq1  AAGCCCAAAGGAGTCCTGTGCCTTTTGGGGCACATTTTGGGGCCCTGGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAAAGGAGTCCTGTGCCTTTTGGGGCACATTTTGGGGCCCTGGCT  443

seq1  TATCTGGGATGAGCATTCTCCATTGCTGGCACTGGGCATTGGTAGTCCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGATGAGCATTCTCCATTGCTGGCACTGGGCATTGGTAGTCCCA  493

seq1  GGACAGGAGGCAATAAGGTACCCACTGTGGTTACATGTTAGGTGCTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAGGCAATAAGGTACCCACTGTGGTTACATGTTAGGTGCTTTTT  543

seq1  TAGTGTAAGCCATGGCTGGAAGCTGGGCACAGTAAAAGAGGTAGAGGTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAAGCCATGGCTGGAAGCTGGGCACAGTAAAAGAGGTAGAGGTGG  593

seq1  TTGGTTCCTGTTCCAGGGAGCACCTGTCTCACATATTAACCATATATTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCTGTTCCAGGGAGCACCTGTCTCACATATTAACCATATATTCT  643

seq1  TTAGAACTCTGTGTGTGTGTGTCTTTCTTTTGCACAGCTGGCCTTTTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTCTGTGTGTGTGTGTCTTTCTTTTGCACAGCTGGCCTTTTGAT  693

seq1  CTACTTCCAATCTGTTATGGAACATGGTTTGGTCAGAGTTAAATTTAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCAATCTGTTATGGAACATGGTTTGGTCAGAGTTAAATTTAAAA  743

seq1  GGTGGTGTGAGTGTGAGTGTGAGTGTGTGTGTGTTGTTCCAGGGGCACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGTGAGTGTGAGTGTGAGTGTGTGTGTGTTGTTCCAGGGGCACAT  793

seq1  GCATGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  843

seq1  GTGTGTGTGTGTGTATGTGTATGTGGGTAGGTGTGTGTGGATATCTGAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATGTGTATGTGGGTAGGTGTGTGTGGATATCTGAGG  893

seq1  AGACTACAAGACAACCTTGAGTGTCAGTTTTTAAAGGGGATATCTGCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACAAGACAACCTTGAGTGTCAGTTTTTAAAGGGGATATCTGCTTT  943

seq1  GTTTTTTTTAAAAGACAGGGTCTCTCATTGGCTAAGTAGGCTAGGCTGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTAAAAGACAGGGTCTCTCATTGGCTAAGTAGGCTAGGCTGAC  993

seq1  TAACCAGGGAGCCCTAGGAATGTAGTGCACTGTTGCCATGCCTGGCTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGGGAGCCCTAGGAATGTAGTGCACTGTTGCCATGCCTGGCTTTT  1043

seq1  TATGTGGGTTCTGAGGATTGAATTC  1074
      |||||||||||||||||||||||||
seq2  TATGTGGGTTCTGAGGATTGAATTC  1068