BAC Information

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BAC

Clone NameB6Ng01-054M09
Chromosome1 (Build37)
Map Location 90,376,824 - 90,548,686
singlet/doubletdoublet
Overlap geneGlrp1
Upstream geneNgef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2
Downstream geneArl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688, Centg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054M09.bB6Ng01-054M09.g
ACCDH877427DH877428
length1,068821
definitionDH877427|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M09, 5' end.DH877428|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,376,824 - 90,377,902)(90,547,867 - 90,548,686)
sequence
gaattccaaaatggccagggctaaacagagaaatcctgtctcaaaaatcc
ataaataaataaataagaacaattgccaatgtccatggctctctgattgt
gtgagaggcagatcctgagttcatttgtataattaagataaaataagata
tatatgtatgtacacacacgcgcgcgcacgggtgcacacacacacacaca
cacacagtggtgtggttttttttttttttctttttcttttctgcttaggg
tgaaaaagtcagtagaacagaaaagatttgaagagaaaagttaaagagaa
caaacacccaagttcctgtctctgagaaagtccactcttgatttaagaat
acgagtcccaacaaaagatttttaatgacccaagatgtatctttttacag
ggaattctaaaacacaacatacgcgttctgtttagagtttgtgttttggt
gagagctgcctacagagtttcatttgaggttcctttgcgcgagcgtgatt
cttctagattgtcagaagtacaataccataccctcccccacacctctgag
atctccctgcatctgccaagatcctgccaacctcagacaaatcaccctgc
gcccctacattgcagactccccagctttgacaggaggggaccaaactgca
ccatgtgaaagtccctctctgccctcgggactcattctgggggccatttt
tcttgttaagatgaaaagtctcctacaaaggctacagaagagagaaatga
gcactcaagtaagaggtagagtgagcatcagaggagccctgagcctcggc
aagcagaaaggagggagcttttgcacccgagacaattatcaaaggggaga
ggagaaggtcaaatttaggacattttatttctcattttaaatccatggct
gacctaaacttattgtctgtgtctttgattgccagtgcaacattatatgg
acatggaagtctgaaattttgaagaggcagaagtcagtgatagattcttt
aaataatcagatagttctgcatttcattgttcgtttgcagctatcatcat
taactggccagttcctca
gaattcctcagctctaaagggttagtaagggttagctctaaagggttagc
ttaaagggtttagtaagctctcaagaacagagaattcccaaccacagact
ccaccaacgtcaatgtcaagagtcacgtgcaggaggactctctgtaagtg
ttgagctcagatgaaaaccattccatgccagggcttggggaagcatacct
aagtgtcccatgcatggatggccacatttttccttccccaaataattacc
cattgcactttactagcggtgattactggaaaagcacgccccacggaagc
ttggggaaacgtggtgttggcttactcatccattccctgagtgctaatgt
aggccgctggcatgtctgtgtggaggctgcctgctagtgtgtggcctggc
ctccacttcagtccagggaacgtgtgtttgccttacgtgccttaaaactg
catgtaggtaggtagaaagaaagaaggaagctggtgtacagatccccata
tcatacagaccccagaaatacctcttgtgatggatgcaggtgtgatgcat
aattgtgggtgtcaacctgactggattaaggaatacttagaaacccgctg
aagcattatttggggtgtgtctatgagagtgttttcagggaggtaaaaaa
gccaagggggaaataaactgttcctctcatcaccaaactctgaaactcca
gactctatggtctttgggacctagaattttccacctttctgggtcctggc
aagcttctgacaacccaggggttgctggtagcagataccagtcacaggtt
ttgcaattctcactctccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90376824_90377902
seq2: B6Ng01-054M09.b_46_1113

seq1  GAATTCCAAAATGGCCAGGGCTAAACAGAGAAATCCTGTCTCAAAAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATGGCCAGGGCTAAACAGAGAAATCCTGTCTCAAAAATCC  50

seq1  ATAAATAAATAAATAAGAACAATTGCCAATGTCCATGGCTCTCTGATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAGAACAATTGCCAATGTCCATGGCTCTCTGATTGT  100

seq1  GTGAGAGGCAGATCCTGAGTTCATTTGTATAATTAAGATAAAATAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGCAGATCCTGAGTTCATTTGTATAATTAAGATAAAATAAGATA  150

seq1  TATATGTATGTACACACACGCGCGCGCACGGGTGCACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATGTACACACACGCGCGCGCACGGGTGCACACACACACACACA  200

seq1  CACACAGTGGTGTGGTTTTTTTTTTTTTTCTTTTTCTTTTCTGCTTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTGGTGTGGTTTTTTTTTTTTTTCTTTTTCTTTTCTGCTTAGGG  250

seq1  TGAAAAAGTCAGTAGAACAGAAAAGATTTGAAGAGAAAAGTTAAAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGTCAGTAGAACAGAAAAGATTTGAAGAGAAAAGTTAAAGAGAA  300

seq1  CAAACACCCAAGTTCCTGTCTCTGAGAAAGTCCACTCTTGATTTAAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCCAAGTTCCTGTCTCTGAGAAAGTCCACTCTTGATTTAAGAAT  350

seq1  ACGAGTCCCAACAAAAGATTTTTAATGACCCAAGATGTATCTTTTTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTCCCAACAAAAGATTTTTAATGACCCAAGATGTATCTTTTTACAG  400

seq1  GGAATTCTAAAACACAACATACGCGTTCTGTTTAGAGTTTGTGTTTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTAAAACACAACATACGCGTTCTGTTTAGAGTTTGTGTTTTGGT  450

seq1  GAGAGCTGCCTACAGAGTTTCATTTGAGGTTCCTTTGCGCGAGCGTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGCCTACAGAGTTTCATTTGAGGTTCCTTTGCGCGAGCGTGATT  500

seq1  CTTCTAGATTGTCAGAAGTACAATACCATACCCTCCCCCACACCTCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGATTGTCAGAAGTACAATACCATACCCTCCCCCACACCTCTGAG  550

seq1  ATCTCCCTGCATCTGCCAAGATCCTGCCAACCTCAGACAAATCACCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTGCATCTGCCAAGATCCTGCCAACCTCAGACAAATCACCCTGC  600

seq1  GCCCCTACATTGCAGACTCCCCAGCTTTGACAGGAGGGGACCAAACTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTACATTGCAGACTCCCCAGCTTTGACAGGAGGGGACCAAACTGCA  650

seq1  CCATGTGAAAGTCCCTCTCTGCCCTCGGGACTCATTCTGGGGGCCATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAAAGTCCCTCTCTGCCCTCGGGACTCATTCTGGGGGCCATTTT  700

seq1  TCTTGTTAAGATGAAAAGTCTCCTACAAAGGCTACAGAAGAGAGAAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTAAGATGAAAAGTCTCCTACAAAGGCTACAGAAGAGAGAAATGA  750

seq1  GCACTCAAGTAAGAGGTAGAGTGAGCATCAGAGGAGCCCTGAGCCTCGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAAGTAAGAGGTAGAGTGAGCATCAGAGGAGCCCTGAGCCTCGGC  800

seq1  AAGCAGAAAGGAGGGAGCTTTTGCACCCGAGACAATTATCAAAGGGGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAAGGAGGGAGCTTTTGCACCCGAGACAATTATCAAAGGGGAGA  850

seq1  GGAGAAGGTTCAAATTTAGGACATTTTATTTCTCATTTTAAATCCATGGC  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGG-TCAAATTTAGGACATTTTATTTCTCATTTTAAATCCATGGC  899

seq1  TGACCTAAAACTTATTGTCTGTGTCTTTGATTGCCAGTGCAACAATTATA  950
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TGACCT-AAACTTATTGTCTGTGTCTTTGATTGCCAGTGCAAC-ATTATA  947

seq1  TGGACAATGGAAGTCTGAAATTTTGAAAGAGGCAGAGGTCAGTGATAGA-  999
      ||||| ||||||||||||||||||| |||||||||| |||||||||||| 
seq2  TGGAC-ATGGAAGTCTGAAATTTTG-AAGAGGCAGAAGTCAGTGATAGAT  995

seq1  TCTTTAAATTAAACCAGATAGTTCTGCATTTCATTGTTCTGTTTGCAGGC  1049
      |||||||||  || ||||||||||||||||||||||||| ||||||| ||
seq2  TCTTTAAAT--AATCAGATAGTTCTGCATTTCATTGTTC-GTTTGCA-GC  1041

seq1  TATTCATCATTTAACTGAGCAAGTTCCTCA  1079
      || |||||| ||||||| || |||||||||
seq2  TA-TCATCA-TTAACTG-GCCAGTTCCTCA  1068

seq1: chr1_90547867_90548686
seq2: B6Ng01-054M09.g_69_889 (reverse)

seq1  AGAGGAGAGTTGAGAATTGGCAAAACCCTGTGACTGGTTATCTGCTAACA  50
      || |||||| |||||||| |||||| ||||||||||| |||||||| || 
seq2  AGTGGAGAG-TGAGAATT-GCAAAA-CCTGTGACTGG-TATCTGCT-ACC  45

seq1  AGCAA-CCCTGGGTTGTCAGTAGCTTGCCAGGA-CCAG-AAGGTGG-AAA  96
      ||||| |||||||||||||| |||||||||||| |||| ||||||| |||
seq2  AGCAACCCCTGGGTTGTCAGAAGCTTGCCAGGACCCAGAAAGGTGGAAAA  95

seq1  TTCTAGGT-CCAAAGACCATAGAGTCTGGAGTTTCAGAGTTTGGTGATGA  145
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTCCCAAAGACCATAGAGTCTGGAGTTTCAGAGTTTGGTGATGA  145

seq1  GAGGAACAGTTTATTTCCCCCTTGGC-TTTTTACCTCCCTGAAAACACTC  194
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGGAACAGTTTATTTCCCCCTTGGCTTTTTTACCTCCCTGAAAACACTC  195

seq1  TCATAGACACACCCCAAATAATGCTTCAGCGGGTTTCTAAGTATTCCTTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGACACACCCCAAATAATGCTTCAGCGGGTTTCTAAGTATTCCTTA  245

seq1  ATCCAGTCAGGTTGACACCCACAATTATGCATCACACCTGCATCCATCAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCAGGTTGACACCCACAATTATGCATCACACCTGCATCCATCAC  295

seq1  AAGAGGTATTTCTGGGGTCTGTATGATATGGGGATCTGTACACCAGCTTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTATTTCTGGGGTCTGTATGATATGGGGATCTGTACACCAGCTTC  345

seq1  CTTCTTTCTTTCTACCTACCTACATGCAGTTTTAAGGCACGTAAGGCAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTTTCTACCTACCTACATGCAGTTTTAAGGCACGTAAGGCAAA  395

seq1  CACACGTTCCCTGGACTGAAGTGGAGGCCAGGCCACACACTAGCAGGCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTTCCCTGGACTGAAGTGGAGGCCAGGCCACACACTAGCAGGCAG  445

seq1  CCTCCACACAGACATGCCAGCGGCCTACATTAGCACTCAGGGAATGGATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACACAGACATGCCAGCGGCCTACATTAGCACTCAGGGAATGGATG  495

seq1  AGTAAGCCAACACCACGTTTCCCCAAGCTTCCGTGGGGCGTGCTTTTCCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCCAACACCACGTTTCCCCAAGCTTCCGTGGGGCGTGCTTTTCCA  545

seq1  GTAATCACCGCTAGTAAAGTGCAATGGGTAATTATTTGGGGAAGGAAAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCACCGCTAGTAAAGTGCAATGGGTAATTATTTGGGGAAGGAAAAA  595

seq1  TGTGGCCATCCATGCATGGGACACTTAGGTATGCTTCCCCAAGCCCTGGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCATCCATGCATGGGACACTTAGGTATGCTTCCCCAAGCCCTGGC  645

seq1  ATGGAATGGTTTTCATCTGAGCTCAACACTTACAGAGAGTCCTCCTGCAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGGTTTTCATCTGAGCTCAACACTTACAGAGAGTCCTCCTGCAC  695

seq1  GTGACTCTTGACATTGACGTTGGTGGAGTCTGTGGTTGGGAATTCTCTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTTGACATTGACGTTGGTGGAGTCTGTGGTTGGGAATTCTCTGT  745

seq1  TCTTGAGAGCTTACTAAACCCTTTAAGCTAACCCTTTAGAGCTAACCCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGAGCTTACTAAACCCTTTAAGCTAACCCTTTAGAGCTAACCCTT  795

seq1  ACTAACCCTTTAGAGCTGAGGAATTC  820
      ||||||||||||||||||||||||||
seq2  ACTAACCCTTTAGAGCTGAGGAATTC  821