BAC Information

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BAC

Clone NameB6Ng01-055N07
Chromosome1 (Build37)
Map Location 6,464,717 - 6,589,256
singlet/doubletdoublet
Overlap genenone
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055N07.bB6Ng01-055N07.g
ACCDH878171DH878172
length1,0811,080
definitionDH878171|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N07, 5' end.DH878172|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,464,717 - 6,465,808)(6,588,166 - 6,589,256)
sequence
gaattctcttagccagttctggaactatgcctcagccctttgttgtagaa
gtacaatagcccaccttaaagaaatgacctgcagtttccctgcagaattc
ccatataaatgaaaaatgtcttctatattttaattctaagtaaacttaca
atgttagcaagcagcaagtcctcatgtttttagcaattttatcattttga
gataaatacagtcatcagtccattttgatgcaactacaagactcaggtgc
cattagaaagcacattgcatttttttttttatgaactgtctgtcatgtgc
ctaatctctaccttggtttgtattattaatttttttgccaatcattagtt
aacagaaatgctttttaaaatcattcccaataagccaaagcatttaaaaa
aataatttgctcaacttcagagaggtccaacatctcaagtacaaaactgg
caattaatgctcattgtttgaataccccaaaatgattagatgctcccatg
agggagaaatttgaagtggccacatttggtaccaggtgtttgagtaaagg
gtgttatttgtcttgagatgtaattggggtcagctatgcaataaagaggt
ttaaactttatacctcagctattattactgggccagtctcaatccctttc
atcaaactctggttccattaccacagtaacaatcattttctcactgggag
ttatcaataagattatagttattgtcagaacctgttagccagaaattact
gactcagcatttggagttcaacagctgcagagtcattcagtaggactctg
aacaatgcagacacagacagacaaacacacagacacacacacacacacag
acacacagacacacacagagtgggaggaaggcaagagaaagagataatta
aagtatgtatagatgtgcaaagatgattttatttgtagtgtatgttacct
gtaatccacacctcagtgcaaaaatcctgtttaaaatataattctaagta
attgttaatttattgtggatttgagatcctttattcgtggaatcatgtaa
attggctctgacttctgtccataaaatcagt

gaattctttaaagaaagctaccagctcaggagaggagtctatatttaatc
agttattcagatacatttcttacctaggatgcaactgggctcaagggaca
ggttatggtttcaactgaaagaagacaatgaattaaaaggaagaggaaaa
ggattcagtgaacattaagaatcttgaaaaaagagaactgtagaaaaaaa
aggataccaaagtcaagttatagaggaaagccaggaggaaggggagcaag
agaaaatgagtaatcaagaaatataaagctcacctcaaatcacaaccatg
acatacaacatagcaagggtagatctcacatttgtgacactgcatcacaa
tatgccaaacattttgtgtctacatttattgttattgataattacaacta
gacagtgctcatcagagcaaaaagggaaatttcaagactacttttataaa
gaaaaatgagtcctgtcaggagagatcccacctggagattccacacttgg
gtgaatgctcacatggaaggcattactaactgacctaaacttactccaca
tttaggtttgaaacattgttttataccaggcaatgaagtagaagagtggc
cacatgtgcaaaaacagcctgactacataattaattccagttcagcttgg
gatacatacatagcaaggatgtgtaaaaaaaaaaaaaaaaaaaaaaaaaa
aactaacttagaattctgcatagtgtctaggatatttgatgttatagtat
acctgctttagttgaaataaacagaatctttgtattttagtaaaatattt
tagccccacttaattatatttcattatagggataaaactgagggtatttg
ttgttcttatttatatatttagtgtgcaaaatgagttctcttatagactt
tatacttcattatagcattggacttacggtctcccacaattcttctatcc
tcctccttcctctagatggtcttccttaattcccaattaataatccctct
ctggtttctcactcttaaccccaccgcaccccccacaaggctggtgccat
gtcttggcttgttccttctttcttggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6464717_6465808
seq2: B6Ng01-055N07.b_48_1128

seq1  GAATTCTCTTAGCCAGTTCTGGAACTATGCCTCAGCCCTTTGTTGTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGCCAGTTCTGGAACTATGCCTCAGCCCTTTGTTGTAGAA  50

seq1  GTACAATAGCCCACCTTAAAGAAATGACCTGCAGTTTCCCTGCAGAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATAGCCCACCTTAAAGAAATGACCTGCAGTTTCCCTGCAGAATTC  100

seq1  CCATATAAATGAAAAATGTCTTCTATATTTTAATTCTAAGTAAACTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAAATGAAAAATGTCTTCTATATTTTAATTCTAAGTAAACTTACA  150

seq1  ATGTTAGCAAGCAGCAAGTCCTCATGTTTTTAGCAATTTTATCATTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCAAGCAGCAAGTCCTCATGTTTTTAGCAATTTTATCATTTTGA  200

seq1  GATAAATACAGTCATCAGTCCATTTTGATGCAACTACAAGACTCAGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATACAGTCATCAGTCCATTTTGATGCAACTACAAGACTCAGGTGC  250

seq1  CATTAGAAAGCACATTGCATTTTTTTTTTTATGAACTGTCTGTCATGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAAGCACATTGCATTTTTTTTTTTATGAACTGTCTGTCATGTGC  300

seq1  CTAATCTCTACCTTGGTTTGTATTATTAATTTTTTTGCCAATCATTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTCTACCTTGGTTTGTATTATTAATTTTTTTGCCAATCATTAGTT  350

seq1  AACAGAAATGCTTTTTAAAATCATTCCCAATAAGCCAAAGCATTTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATGCTTTTTAAAATCATTCCCAATAAGCCAAAGCATTTAAAAA  400

seq1  AATAATTTGCTCAACTTCAGAGAGGTCCAACATCTCAAGTACAAAACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTGCTCAACTTCAGAGAGGTCCAACATCTCAAGTACAAAACTGG  450

seq1  CAATTAATGCTCATTGTTTGAATACCCCAAAATGATTAGATGCTCCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATGCTCATTGTTTGAATACCCCAAAATGATTAGATGCTCCCATG  500

seq1  AGGGAGAAATTTGAAGTGGCCACATTTGGTACCAGGTGTTTGAGTAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAATTTGAAGTGGCCACATTTGGTACCAGGTGTTTGAGTAAAGG  550

seq1  GTGTTATTTGTCTTGAGATGTAATTGGGGTCAGCTATGCAATAAAGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATTTGTCTTGAGATGTAATTGGGGTCAGCTATGCAATAAAGAGGT  600

seq1  TTAAACTTTATACCTCAGCTATTATTACTGGGCCAGTCTCAATCCCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTTATACCTCAGCTATTATTACTGGGCCAGTCTCAATCCCTTTC  650

seq1  ATCAAACTCTGGTTCCATTACCACAGTAACAATCATTTTCTCACTGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTCTGGTTCCATTACCACAGTAACAATCATTTTCTCACTGGGAG  700

seq1  TTATCAATAAGATTATAGTTATTGTCAGAACCTGTTAGCCAGAAATTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATAAGATTATAGTTATTGTCAGAACCTGTTAGCCAGAAATTACT  750

seq1  GACTCAGCATTTGGAGTTCAACAGCTGCAGAGTCATTCAGTAGGACTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGCATTTGGAGTTCAACAGCTGCAGAGTCATTCAGTAGGACTCTG  800

seq1  AACAATGCAGACACAGACAGACAAACACACAGACACACACACACACACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCAGACACAGACAGACAAACACACAGACACACACACACACACAG  850

seq1  ACACACAGACACACACAGAGTGGGAGGAAGGCAAGAGAAAGAGATAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACACACACAGAGTGGGAGGAAGGCAAGAGAAAGAGATAATTA  900

seq1  AAGTATGTATAGATGTGCAAAGATGATTTTATTTTGTAGTGTATGTTACC  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGTATGTATAGATGTGCAAAGATGATTTTA-TTTGTAGTGTATGTTACC  949

seq1  TGTAATCCACACCTCAGTGCAAAAAAATCCTGTTTAAAAATATAATTCTA  1000
      ||||||||||||||||||||  ||||||||||||| ||||||||||||||
seq2  TGTAATCCACACCTCAGTGC--AAAAATCCTGTTT-AAAATATAATTCTA  996

seq1  AGTAATTGTTAATTTATTTGTGAATTTGAGAATCCCTTTATTTGTGGGAA  1050
      |||||||||||||||| ||||| ||||||||   |||||||| || ||||
seq2  AGTAATTGTTAATTTA-TTGTGGATTTGAGA--TCCTTTATTCGT-GGAA  1042

seq1  TCATGTAAATTGGCTCCTGACTTCTGTCTCATAAAATTCAGT  1092
      ||||||||||||||| |||||||||||| ||||||| |||||
seq2  TCATGTAAATTGGCT-CTGACTTCTGTC-CATAAAA-TCAGT  1081


seq1: chr1_6588166_6589256
seq2: B6Ng01-055N07.g_69_1148 (reverse)

seq1  AAAACCAAGAAAGAA-GAAC-AGCCAAGACATGGCCACCAGCCTGTGTGT  48
      ||||||||||||||| |||| ||||||||||||| ||||||||| |||| 
seq2  AAAACCAAGAAAGAAGGAACAAGCCAAGACATGG-CACCAGCCT-TGTG-  47

seq1  GTGTGTGTGTGTGTGTATAAGAGTGAGAAAGCAGAGGAGGGATTGATTAA  98
      | | ||| | ||| |  ||||||||||||| |||| |||||||| |||||
seq2  GGGGGTGCG-GTGGGGTTAAGAGTGAGAAACCAGA-GAGGGATT-ATTAA  94

seq1  TTGGGGAAATAAAGAAGACCATCAAGAGGAAGGAGGAAGGATAGGAAGAA  148
      || ||||| ||| |||||||||| |||||||||||| |||||| ||||||
seq2  TT-GGGAATTAAGGAAGACCATCTAGAGGAAGGAGG-AGGATA-GAAGAA  141

seq1  TAGTGGGAGAACAGTAAAGTACAATGCTATATGGAAGTATAAAGTTCTTA  198
      | ||||||| || || |||| ||||||||||  ||||||||||||   ||
seq2  TTGTGGGAG-ACCGT-AAGTCCAATGCTATAATGAAGTATAAAGT--CTA  187

seq1  TAATGGAACTCATTTTTGCACACTAAATATATAAATAAGAACAACAAATA  248
      |||  ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAACTCA-TTTTGCACACTAAATATATAAATAAGAACAACAAATA  236

seq1  CCCTCAGTTTTATCCCTATAATGAAATATATTTAAGT-GAGCT-AAATAT  296
      |||||||||||||||||||||||||||||| |||||| | ||| ||||||
seq2  CCCTCAGTTTTATCCCTATAATGAAATATAATTAAGTGGGGCTAAAATAT  286

seq1  TATAACTAAAATACAAAGATTCTGTTTATTTCAACTAAAGCAGGTATACT  346
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-TTACTAAAATACAAAGATTCTGTTTATTTCAACTAAAGCAGGTATACT  335

seq1  ATAACATCAAATATCCTAGACACTATGCAGAATTCTAAGTTAGTTTTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATCAAATATCCTAGACACTATGCAGAATTCTAAGTTAGTTTTTTT  385

seq1  TTTTTTTTTTTTTTTTTTTTTACACATCCTTGCTATGTATGTATCCCAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTACACATCCTTGCTATGTATGTATCCCAAG  435

seq1  CTGAACTGGAATTAATTATGTAGTCAGGCTGTTTTTGCACATGTGGCCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGGAATTAATTATGTAGTCAGGCTGTTTTTGCACATGTGGCCAC  485

seq1  TCTTCTACTTCATTGCCTGGTATAAAACAATGTTTCAAACCTAAATGTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACTTCATTGCCTGGTATAAAACAATGTTTCAAACCTAAATGTGG  535

seq1  AGTAAGTTTAGGTCAGTTAGTAATGCCTTCCATGTGAGCATTCACCCAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTTAGGTCAGTTAGTAATGCCTTCCATGTGAGCATTCACCCAAG  585

seq1  TGTGGAATCTCCAGGTGGGATCTCTCCTGACAGGACTCATTTTTCTTTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATCTCCAGGTGGGATCTCTCCTGACAGGACTCATTTTTCTTTAT  635

seq1  AAAAGTAGTCTTGAAATTTCCCTTTTTGCTCTGATGAGCACTGTCTAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGTCTTGAAATTTCCCTTTTTGCTCTGATGAGCACTGTCTAGTT  685

seq1  GTAATTATCAATAACAATAAATGTAGACACAAAATGTTTGGCATATTGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATCAATAACAATAAATGTAGACACAAAATGTTTGGCATATTGTG  735

seq1  ATGCAGTGTCACAAATGTGAGATCTACCCTTGCTATGTTGTATGTCATGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGTCACAAATGTGAGATCTACCCTTGCTATGTTGTATGTCATGG  785

seq1  TTGTGATTTGAGGTGAGCTTTATATTTCTTGATTACTCATTTTCTCTTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTGAGGTGAGCTTTATATTTCTTGATTACTCATTTTCTCTTGC  835

seq1  TCCCCTTCCTCCTGGCTTTCCTCTATAACTTGACTTTGGTATCCTTTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCCTCCTGGCTTTCCTCTATAACTTGACTTTGGTATCCTTTTTT  885

seq1  TTCTACAGTTCTCTTTTTTCAAGATTCTTAATGTTCACTGAATCCTTTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGTTCTCTTTTTTCAAGATTCTTAATGTTCACTGAATCCTTTTC  935

seq1  CTCTTCCTTTTAATTCATTGTCTTCTTTCAGTTGAAACCATAACCTGTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTTTAATTCATTGTCTTCTTTCAGTTGAAACCATAACCTGTCC  985

seq1  CTTGAGCCCAGTTGCATCCTAGGTAAGAAATGTATCTGAATAACTGATTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCCCAGTTGCATCCTAGGTAAGAAATGTATCTGAATAACTGATTA  1035

seq1  AATATAGACTCCTCTCCTGAGCTGGTAGCTTTCTTTAAAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGACTCCTCTCCTGAGCTGGTAGCTTTCTTTAAAGAATTC  1080


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