BAC Information

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BAC

Clone NameB6Ng01-055O11
Chromosome1 (Build37)
Map Location 177,995,036 - 177,996,054
singlet/doubletsinglet
Overlap genePld5
Upstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, B020018G12Rik
Downstream geneCep170, Sdccag8, LOC666235, Akt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055O11.b
ACCDH878223
length1,030
definitionDH878223|Mus musculus domesticus DNA, BAC clone: B6Ng01-055O11, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttccatgtgaatgttatgctgttaaattaccaataacacatgat
atatttttgtttttttcctcctcagaccactacagcactgagtgtatatt
tggggggaaaaaggaaggaaaatccttttataagttaactttaagttaat
aatggcctgcactgataacatgtaaggagactaaaaggctcaggctgagc
tcccaaggccgcatgcgccttctcctcagctttgtgtgggaacagatttt
tgttcatcagcatctttagtgaacctaacagtctccaatcaggtccctct
tttcttcacactgtgtgcagccccaaggtgccagctccctgtggaaaatt
tggcctcaaaaaaatacttacacaaacccaaggctggggtgtgagttagg
ttttgtcttctgtgaagcaggaaagatttagttgtcactggaggtttaag
tgattcatatataatatttatgtgctagaaattttagccaagaaactctt
ttgaatctaagaggaaagttcccaggagagcaggggaggggtgctgagct
gcccttctggccacaagtcccaaggatttatgtgctgatcaagagtctgt
tctggtgttgtagcactcagcactgtagccctctctacagggaccatttg
ggaactttcaggcaccattcatagaccagtgtccaccctgattcttctcc
cctgtggtcttttcttctttcttcttccctcttttcctagtaatttcccc
tttataaaagtgctcatttttgtaattttaatatttatttattattatta
ttattgttgttgctgttggttttgagacagggtctttctatatggtcctg
gctatcctgacacttaccatgaaacttaccatagactatgctggcctcag
cctcacaagagatcctcctgcctttacatcccaagtacgagaattaatga
catgcatcgccacgccgagctaaaaatcctcatttaaaaaaaaatatata
ttttatatattagtgtttatctatatatat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177995036_177996054
seq2: B6Ng01-055O11.b_45_1074

seq1  GAATTCTTCCAAGTGAATGTTATGCTGTTGAATTACCAATAACACATGAG  50
      ||||||||||| ||||||||||||||||| ||||||||||||||||||| 
seq2  GAATTCTTCCATGTGAATGTTATGCTGTTAAATTACCAATAACACATGAT  50

seq1  ATATTTTTGTTTTTTTCCTCCTCAGACCACTACAGCACTGAGTGTAGATT  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATATTTTTGTTTTTTTCCTCCTCAGACCACTACAGCACTGAGTGTATATT  100

seq1  TGGGGGGAAAAAGGAAGGAAAAGCCTTTTAAAAGTTAACTTAAAGTTAAG  150
      |||||||||||||||||||||| ||||||| |||||||||| ||||||| 
seq2  TGGGGGGAAAAAGGAAGGAAAATCCTTTTATAAGTTAACTTTAAGTTAAT  150

seq1  AATGGCCTGCACTGAGAACATGTAAGGAGACTAAGAGGCTCAGGCTGAGC  200
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  AATGGCCTGCACTGATAACATGTAAGGAGACTAAAAGGCTCAGGCTGAGC  200

seq1  TCCCAAGGCCGCATGCGCCTTCTCCTCAGCTTTGTGTGGGAACAGATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGCCGCATGCGCCTTCTCCTCAGCTTTGTGTGGGAACAGATTTT  250

seq1  TGTTCATCAGCATCTTTAGTGAACCTAACAGTCTCCAATCAGGTCCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCAGCATCTTTAGTGAACCTAACAGTCTCCAATCAGGTCCCTCT  300

seq1  TTTCTTCACACTGTGTGCAGCCCCAAGGTGCAGGCTCCCTGTGGAAAATT  350
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TTTCTTCACACTGTGTGCAGCCCCAAGGTGCCAGCTCCCTGTGGAAAATT  350

seq1  TGGCCTCAAAAAAGTACAGACACGAACCCAAGGCTGGGGTGTGAGTTAGG  400
      ||||||||||||| |||  |||| ||||||||||||||||||||||||||
seq2  TGGCCTCAAAAAAATACTTACACAAACCCAAGGCTGGGGTGTGAGTTAGG  400

seq1  TTTTGTCTTCTGTGAAGCAGGAAAGATTTAGTTGTCACTGGAGGTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTCTGTGAAGCAGGAAAGATTTAGTTGTCACTGGAGGTTTAAG  450

seq1  TGATTCATATATAATATTTATGTGCTAGAAATTTTAGCCAAGAAACTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATATATAATATTTATGTGCTAGAAATTTTAGCCAAGAAACTCTT  500

seq1  TTGAATCTAAGAGGAAAGTTCCCAGGAGAGCAGGGGAGGGGTGCTGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTAAGAGGAAAGTTCCCAGGAGAGCAGGGGAGGGGTGCTGAGCT  550

seq1  GCCCTTCTGGCCACAAGTCCCAAGGATTTATGTGCTGATCAAGAGTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCTGGCCACAAGTCCCAAGGATTTATGTGCTGATCAAGAGTCTGT  600

seq1  TCTGGTGTTGTAGCACTCAGCACTGTAGCCCTCTCTACAGGGACCATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTTGTAGCACTCAGCACTGTAGCCCTCTCTACAGGGACCATTTG  650

seq1  GGAACTTTCAGGCACCATTCATAGACCAGTGTCCACCCTGATTCTTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTCAGGCACCATTCATAGACCAGTGTCCACCCTGATTCTTCTCC  700

seq1  CCTGTGGTCTTTTCTTCTTTCTTCTTCCCTCTTTTCCTAGTAATTTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTCTTTTCTTCTTTCTTCTTCCCTCTTTTCCTAGTAATTTCCCC  750

seq1  TTTATAAAAGTGCTCATTTTTGTAATTTTAATATTTA-TTATTATTATTA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTATAAAAGTGCTCATTTTTGTAATTTTAATATTTATTTATTATTATTA  800

seq1  TTATTGTTGTTGCTGTTGGTTTTGAGACAGGGTCTTTCTATATGGTCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGTTGCTGTTGGTTTTGAGACAGGGTCTTTCTATATGGTCCTG  850

seq1  GCTATCCTGACACTTACCATGAAACTTACCATAGACTATGCTGGCCTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTGACACTTACCATGAAACTTACCATAGACTATGCTGGCCTCAG  900

seq1  CCTCACAAGAGATCCTCCTGCCTTTACATCCCAAGTACGAGAATTAATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAAGAGATCCTCCTGCCTTTACATCCCAAGTACGAGAATTAATGA  950

seq1  CATGCATCGCCACGCCGAGCTAAAAATCCTCATTTAAAAAAAAA-ATATA  998
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATGCATCGCCACGCCGAGCTAAAAATCCTCATTTAAAAAAAAATATATA  1000

seq1  ---TATATA------TATATATATATATAT  1019
         ||||||      | ||| |||||||||
seq2  TTTTATATATTAGTGTTTATCTATATATAT  1030