BAC Information

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BAC

Clone NameB6Ng01-058B12
Chromosome1 (Build37)
Map Location 66,382,937 - 66,485,762
singlet/doubletdoublet
Overlap geneMtap2
Upstream genePthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058B12.bB6Ng01-058B12.g
ACCDH879767DH879768
length1,0721,097
definitionDH879767|Mus musculus domesticus DNA, BAC clone: B6Ng01-058B12, 5' end.DH879768|Mus musculus domesticus DNA, BAC clone: B6Ng01-058B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,484,671 - 66,485,762)(66,382,937 - 66,384,045)
sequence
gaattcaggtcattttctgcatatactattaattttttatataaaattgt
aacaattactacagttgggggatgaaattatttctctatggtttgtaaag
aatgaatatgacacctgctcagagcccactcctgccaagagctcatgcct
aaatgttactccagtgctaaaggagaagtattcacaagccctgcttagca
agcgccgcagtgacatcctcagccaaagtggcaagctgaggggattcgag
caggttgatgcttccagaagatgagacgttgctgagtcgtcggggtgatg
ccacgctggacctgcttggggactgtgtgatgatctcagccccgtgatct
acccgggcctttgcatgctctctgaagttcaacttttggctgtcaatctg
ttgaagagaaacatcagccctcattagttcaagcatcttcaccaatcact
agctctttcccacctgttcatataagaatatgatgtgtattcagcttagc
atctctccttcctgtttgagaagttctttaaccagagatccactttgatc
aagctatttcagaatagctaggagtaatgctgggttactaaagtagtagt
tgtaggtttttactagttaggaacatatattcacactaatatgtatgtgt
gtgtgtgtaactaattaaaaacatggccatgaatttgaaagagaaagaag
gtttcagagagaggaaagggcagggggaatgatgtaataatgtatattat
aacctcaaaataaaaaataacttaaaaagaatatttcataagaaacatga
ctggttcattgccattctcaccttcacattaccacctccaggtacgtggt
gagcattgttcagtgagccaactttagctgggccttttccttgaaatcca
gttttacactctcaatttcacacgtccaccaccttcaggagagaagcttt
tttaatgccttgctgaaatggaatcctaattataaaactacactcacaca
agcataaggcatatgatgccgagaaggttttttcctgtcttaccgacatg
ggaaactggtaaaattttagcc
gaattctttgtcagtccatgttgttgaataaaaagtggcagattttcttg
tgatgccaggatattagggtgagcactaagactctgtgagagaccataga
tgtagcagccacactgctcatttcacatgggatacttactccacagtttc
agtatgatgttgtcttaggattccattgctgtgaaagacaccacgaccaa
ggcaacttttataaaggacagcatttaattaaggctagcttacaggttca
gaggtttggtccattatcatcaaggcaggagcatggaagcattcaggcag
gcatggcaccggaggagctgagagctctacatctttttccaaggcaaaca
aaagaagaatgactctcaggcatcccaggaggagggtctcaaagcccacc
actacaatgacacaattcctccaacaagtccccgcctactccaataaggc
cacacctcctaatagtgcccctttctggaccaaccatattcaaaccacaa
cagatgtcatctcatcattggaatcaggcttgtagttatgtagctttgtc
tactgactacagttgtccttttcttcacatgtatagattcttacatggtg
tttgatatgtaggtgtattaaactacatacatgtctatctaccatataca
catgtatactcatataagcaaatgttgaattaagcatgatttcttaagaa
ggcaatagttcagcttggttcaggattatttctgccaatgacagttgtat
gctctccacagagaacctcaaaaagtgttacctcatagattcatgagaaa
taaaagcttatgaagttgtcagacttgtaaacataggcagtaaatttaac
tactatctttttattcttatttttctagcaacactagctaatagttatag
gtgtccattagttttccactccctctccttttttcatcataaaaatgcag
ggtttcacgtcttgtcatgtttgtaaagtgttcattgttttctacatcta
caggggaaagactctcccaaaaccatttataccgtgagctatgaatttgt
acagacaagtgaaactcatgaagactctaacgcacggagctctgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66484671_66485762
seq2: B6Ng01-058B12.b_50_1121 (reverse)

seq1  GGCTAAAAATTTTAACAGATTTCTCCCATGTCTGGTTAGGACAGGAAAAT  50
      |||| ||||||||| |||   | |||||||||  | || |||||||||  
seq2  GGCT-AAAATTTTACCAG---TTTCCCATGTC--GGTAAGACAGGAAA--  42

seq1  ATACCTTCTCTGGCATTCTATATGGCTTATGCTTGTGTGAGTGTAGTTTT  100
      | |||||||| |||||   ||||| ||||||||||||||||||||| |||
seq2  AAACCTTCTC-GGCAT--CATATGCCTTATGCTTGTGTGAGTGTAG-TTT  88

seq1  TATAAATATAAGATTCCATTTCAGCAAGGCATTTAAAAAAGGCTTTCTCT  150
      |||||   || |||||||||||||||||||| |||||||||   ||||||
seq2  TATAA--TTAGGATTCCATTTCAGCAAGGCA-TTAAAAAAG--CTTCTCT  133

seq1  CCTGAAGGTGGTGGACGTGTGAAAATTGAGAGTGTAAAACTGGATTTCAA  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTGAAGGTGGTGGACGTGTG-AAATTGAGAGTGTAAAACTGGATTTCAA  182

seq1  GGAAAAGGCCCAAGCTAAAGTTGGCTCACTTGACAATGCTCACCACGTAC  250
      ||||||||||| ||||||||||||||||||  ||||||||||||||||||
seq2  GGAAAAGGCCC-AGCTAAAGTTGGCTCACTGAACAATGCTCACCACGTAC  231

seq1  CTGGAGGTGGTAATGTGAAGGTGAGAATGGCAATGAACCAGTCATGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTGGTAATGTGAAGGTGAGAATGGCAATGAACCAGTCATGTTTC  281

seq1  TTATGAAATATTCTTTTTAAGTTATTTTTTATTTTTGAGGTTATAATATA  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTATGAAATATTCTTTTTAAGTTATTTTTTA-TTTTGAGGTTATAATATA  330

seq1  CATTATTACATCATTCCCCCTGCCCTTTCCTCTCTCTGAAACCTTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTACATCATTCCCCCTGCCCTTTCCTCTCTCTGAAACCTTCTTTC  380

seq1  TCTTTCAAATTCATGGCCATGTTTTTAATTAGTTACACACACACACATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAATTCATGGCCATGTTTTTAATTAGTTACACACACACACATAC  430

seq1  ATATTAGTGTGAATATATGTTCCTAACTAGTAAAAACCTACAACTACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTGTGAATATATGTTCCTAACTAGTAAAAACCTACAACTACTAC  480

seq1  TTTAGTAACCCAGCATTACTCCTAGCTATTCTGAAATAGCTTGATCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAACCCAGCATTACTCCTAGCTATTCTGAAATAGCTTGATCAAAG  530

seq1  TGGATCTCTGGTTAAAGAACTTCTCAAACAGGAAGGAGAGATGCTAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTCTGGTTAAAGAACTTCTCAAACAGGAAGGAGAGATGCTAAGCT  580

seq1  GAATACACATCATATTCTTATATGAACAGGTGGGAAAGAGCTAGTGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACACATCATATTCTTATATGAACAGGTGGGAAAGAGCTAGTGATTG  630

seq1  GTGAAGATGCTTGAACTAATGAGGGCTGATGTTTCTCTTCAACAGATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATGCTTGAACTAATGAGGGCTGATGTTTCTCTTCAACAGATTGA  680

seq1  CAGCCAAAAGTTGAACTTCAGAGAGCATGCAAAGGCCCGGGTAGATCACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAAAGTTGAACTTCAGAGAGCATGCAAAGGCCCGGGTAGATCACG  730

seq1  GGGCTGAGATCATCACACAGTCCCCAAGCAGGTCCAGCGTGGCATCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGATCATCACACAGTCCCCAAGCAGGTCCAGCGTGGCATCACCC  780

seq1  CGACGACTCAGCAACGTCTCATCTTCTGGAAGCATCAACCTGCTCGAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGACTCAGCAACGTCTCATCTTCTGGAAGCATCAACCTGCTCGAATC  830

seq1  CCCTCAGCTTGCCACTTTGGCTGAGGATGTCACTGCGGCGCTTGCTAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCTTGCCACTTTGGCTGAGGATGTCACTGCGGCGCTTGCTAAGC  880

seq1  AGGGCTTGTGAATACTTCTCCTTTAGCACTGGAGTAACATTTAGGCATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTGTGAATACTTCTCCTTTAGCACTGGAGTAACATTTAGGCATGA  930

seq1  GCTCTTGGCAGGAGTGGGCTCTGAGCAGGTGTCATATTCATTCTTTACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGCAGGAGTGGGCTCTGAGCAGGTGTCATATTCATTCTTTACAA  980

seq1  ACCATAGAGAAATAATTTCATCCCCCAACTGTAGTAATTGTTACAATTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGAGAAATAATTTCATCCCCCAACTGTAGTAATTGTTACAATTTT  1030

seq1  ATATAAAAAATTAATAGTATATGCAGAAAATGACCTGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAATTAATAGTATATGCAGAAAATGACCTGAATTC  1072

seq1: chr1_66382937_66384045
seq2: B6Ng01-058B12.g_68_1164

seq1  GAATTCTTTGTCAGTCCATGTTGTTGAATAAAAAGTGGCAGATTTTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCAGTCCATGTTGTTGAATAAAAAGTGGCAGATTTTCTTG  50

seq1  TGATGCCAGGATATTAGGGTGAGCACTAAGACTCTGTGAGAGACCATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCAGGATATTAGGGTGAGCACTAAGACTCTGTGAGAGACCATAGA  100

seq1  TGTAGCAGCCACACTGCTCATTTCACATGGGATACTTACTCCACAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGCCACACTGCTCATTTCACATGGGATACTTACTCCACAGTTTC  150

seq1  AGTATGATGTTGTCTTAGGATTCCATTGCTGTGAAAGACACCACGACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGATGTTGTCTTAGGATTCCATTGCTGTGAAAGACACCACGACCAA  200

seq1  GGCAACTTTTATAAAGGACAGCATTTAATTAAGGCTAGCTTACAGGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTTTTATAAAGGACAGCATTTAATTAAGGCTAGCTTACAGGTTCA  250

seq1  GAGGTTTGGTCCATTATCATCAAGGCAGGAGCATGGAAGCATTCAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTGGTCCATTATCATCAAGGCAGGAGCATGGAAGCATTCAGGCAG  300

seq1  GCATGGCACCGGAGGAGCTGAGAGCTCTACATCTTTTTCCAAGGCAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCACCGGAGGAGCTGAGAGCTCTACATCTTTTTCCAAGGCAAACA  350

seq1  AAAGAAGAATGACTCTCAGGCATCCCAGGAGGAGGGTCTCAAAGCCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAATGACTCTCAGGCATCCCAGGAGGAGGGTCTCAAAGCCCACC  400

seq1  ACTACAATGACACAATTCCTCCAACAAGTCCCCGCCTACTCCAATAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAATGACACAATTCCTCCAACAAGTCCCCGCCTACTCCAATAAGGC  450

seq1  CACACCTCCTAATAGTGCCCCTTTCTGGACCAACCATATTCAAACCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCCTAATAGTGCCCCTTTCTGGACCAACCATATTCAAACCACAA  500

seq1  CAGATGTCATCTCATCATTGGAATCAGGCTTGTAGTTATGTAGCTTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCATCTCATCATTGGAATCAGGCTTGTAGTTATGTAGCTTTGTC  550

seq1  TACTGACTACAGTTGTCCTTTTCTTCACATGTATAGATTCTTACATGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTACAGTTGTCCTTTTCTTCACATGTATAGATTCTTACATGGTG  600

seq1  TTTGATATGTAGGTGTATTAAACTACATACATGTCTATCTACCATATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATGTAGGTGTATTAAACTACATACATGTCTATCTACCATATACA  650

seq1  CATGTATACTCATATAAGCAAATGTTGAATTAAGCATGATTTCTTAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATACTCATATAAGCAAATGTTGAATTAAGCATGATTTCTTAAGAA  700

seq1  GGCAATAGTTCAGCTTGGTTCAGGATTATTTCTGCCAATGACAGTTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAGTTCAGCTTGGTTCAGGATTATTTCTGCCAATGACAGTTGTAT  750

seq1  GCTCTCCACAGAGAACCTCAAAAAGTGTTACCTCATAGATTCATGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCACAGAGAACCTCAAAAAGTGTTACCTCATAGATTCATGAGAAA  800

seq1  TAAAAGCTTATGAAGTTGTCAGACTTGTAAACATAGGCAGTAAATTTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTTATGAAGTTGTCAGACTTGTAAACATAGGCAGTAAATTTAAC  850

seq1  TACTATCTTTTTATTCTTA-TTTTCTAGCAACACTAGCT-ATAGTTATAG  898
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  TACTATCTTTTTATTCTTATTTTTCTAGCAACACTAGCTAATAGTTATAG  900

seq1  GTGGTCCATTAGTTTTCCACTCCCTCTCCTTTTTTCATCATAAAAATGCA  948
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-GTCCATTAGTTTTCCACTCCCTCTCCTTTTTTCATCATAAAAATGCA  949

seq1  GGGTTTCACGTCTTTGTACATGTTTGTAAAGTGTTTCATTGTTTTCTACA  998
      |||||||||||| |||| ||||||||||||||| ||||||||||||||||
seq2  GGGTTTCACGTC-TTGT-CATGTTTGTAAAGTG-TTCATTGTTTTCTACA  996

seq1  TCTTACAGGGGAAAGAACTCTCCAAACACATTTTATACCGTGAGCCTATG  1048
      || |||||||||||| ||||||| || ||  ||||||||||||| |||||
seq2  TC-TACAGGGGAAAG-ACTCTCCCAAAACCATTTATACCGTGAG-CTATG  1043

seq1  AATTTTGTACAGACCAAGTTGGAGCCTCATGAAAGACTCCAACGCACAGG  1098
      || |||||||||| |||||  ||  |||||| ||||||| |||||||  |
seq2  AA-TTTGTACAGA-CAAGT--GAAACTCATG-AAGACTCTAACGCAC--G  1086

seq1  GAGCTCTGCTT  1109
      |||||||||||
seq2  GAGCTCTGCTT  1097