BAC Information

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BAC

Clone NameB6Ng01-058B16
Chromosome1 (Build37)
Map Location 13,135,439 - 13,272,430
singlet/doubletdoublet
Overlap geneNcoa2
Upstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14
Downstream geneLOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058B16.bB6Ng01-058B16.g
ACCDH879775DH879776
length1,170253
definitionDH879775|Mus musculus domesticus DNA, BAC clone: B6Ng01-058B16, 5' end.DH879776|Mus musculus domesticus DNA, BAC clone: B6Ng01-058B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,135,439 - 13,136,629)(13,272,178 - 13,272,430)
sequence
gaattctatgtcaaccaggctgctcttgtagtgactttcctgcatgcgcg
gttatgcttggctgctcttgcaatattcaaggacataacatgcattgaca
accatgctgtgctttacaggaggcaagaaggcaggagaaacaaagcaggg
agattcctggtgctcctaggagaaagcagaagcctgggtctgcttcagag
ggcttggctggcaaggggcttttcctagatagctgttcaaatgctagctg
gctcactctcactcatacttacagcactctggctaggctcccctggcact
ttgcagttacaatgtcctctctgagtgtgtgagtgtcacctgctgtcact
gtgcctcaggttttggacctctgcttttgcatggagttacctctgagctc
ttagcactccctgcctgtgaaaaccatggctataggagaggtatcagccc
ttgggaagtgataaacccaaacaaaggaacacatggttagtgtacaatct
accccgctgtctgacattcttacctgctatgtatacataccagatacaca
tacagtaaggaaggaagatatggtaagcttcgtgcacctaattatcacgt
tttaaggacacgtgtgagaaacagctacaggactcctacccgctgtcagt
agtatctctgaagcccacaatcagggttacaaaacccagaaaagccacag
tgggaaagccaatccaggacattgctgagcaatgggcgggtgaggtctac
tgtagccctgctgctaacaacacaaaggctctggagtgaggaagttcagt
gctcatttacactccactctctccaatgggatcaagctattgcttggttt
tgagtatgcggaggtggcctaagaggttatttctttaaacattttactgt
ttctgtggcgtgtgcaggcacccgtgtgcaggcacccgtgtgcagcacga
ggacatgtggagagttggctctttccactctgacttcggggatttaatca
gttctcctggcctctcatttttgagactggatcctccataccgggctggc
ttaagacttgcttgatgccagttccccacctcctgcgtcctctcgacaga
tgacctttctgagggtggactggcaggtcatacagtggttaggaagagct
gaaagaccgtcacagtgcat
ctggtctgaattatgggatggagaattctttagtttgaattcaaaaggca
aaggactatgtgccattaaaaaaaaagtctgtagcaagctactggttcca
gtctagatcacacttttaacatcattaaacctaaactggctttgtccact
aaacagcaggatttaggttagccttgacatgccattgaatttaaatacat
gactagtgcttcactactgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_13135439_13136629
seq2: B6Ng01-058B16.b_45_1214

seq1  GAATTCTATGTCAACCAGGCTGCTCTTGTAGTGACTTTCCTGCATGCGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTCAACCAGGCTGCTCTTGTAGTGACTTTCCTGCATGCGCG  50

seq1  GTTATGCTTGGCTGCTCTTGCAATATTCAAGGACATAACATGCATTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTTGGCTGCTCTTGCAATATTCAAGGACATAACATGCATTGACA  100

seq1  ACCATGCTGTGCTTTACAGGAGGCAAGAAGGCAGGAGAAACAAAGCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTGTGCTTTACAGGAGGCAAGAAGGCAGGAGAAACAAAGCAGGG  150

seq1  AGATTCCTGGTGCTCCTAGGAGAAAGCAGAAGCCTGGGTCTGCTTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTGGTGCTCCTAGGAGAAAGCAGAAGCCTGGGTCTGCTTCAGAG  200

seq1  GGCTTGGCTGGCAAGGGGCTTTTCCTAGATAGCTGTTCAAATGCTAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGCTGGCAAGGGGCTTTTCCTAGATAGCTGTTCAAATGCTAGCTG  250

seq1  GCTCACTCTCACTCATACTTACAGCACTCTGGCTAGGCTCCCCTGGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTCTCACTCATACTTACAGCACTCTGGCTAGGCTCCCCTGGCACT  300

seq1  TTGCAGTTACAATGTCCTCTCTGAGTGTGTGAGTGTCACCTGCTGTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTACAATGTCCTCTCTGAGTGTGTGAGTGTCACCTGCTGTCACT  350

seq1  GTGCCTCAGGTTTTGGACCTCTGCTTTTGCATGGAGTTACCTCTGAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCAGGTTTTGGACCTCTGCTTTTGCATGGAGTTACCTCTGAGCTC  400

seq1  TTAGCACTCCCTGCCTGTGAAAACCATGGCTATAGGAGAGGTATCAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTCCCTGCCTGTGAAAACCATGGCTATAGGAGAGGTATCAGCCC  450

seq1  TTGGGAAGTGATAAACCCAAACAAAGGAACACATGGTTAGTGTACAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGTGATAAACCCAAACAAAGGAACACATGGTTAGTGTACAATCT  500

seq1  ACCCCGCTGTCTGACATTCTTACCTGCTATGTATACATACCAGATACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGCTGTCTGACATTCTTACCTGCTATGTATACATACCAGATACACA  550

seq1  TACAGTAAGGAAGGAAGATATGGTAAGCTTCGTGCACCTAATTATCACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAGGAAGGAAGATATGGTAAGCTTCGTGCACCTAATTATCACGT  600

seq1  TTTAAGGACACGTGTGAGAAACAGCTACAGGACTCCTACCCGCTGTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGACACGTGTGAGAAACAGCTACAGGACTCCTACCCGCTGTCAGT  650

seq1  AGTATCTCTGAAGCCCACAATCAGGGTTACAAAACCCAGAAAAGCCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCTGAAGCCCACAATCAGGGTTACAAAACCCAGAAAAGCCACAG  700

seq1  TGGGAAAGCCAATCCAGGACATTGCTGAGCAATGGGCGGGTGAGGTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGCCAATCCAGGACATTGCTGAGCAATGGGCGGGTGAGGTCTAC  750

seq1  TGTAGCCCTGCTGCTAACAACACAAAGGCTCTGGAGTGAGGAAGTTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGCTGCTAACAACACAAAGGCTCTGGAGTGAGGAAGTTCAGT  800

seq1  GCTCATTTACACTCCACTCTCTCCAATGGGATCAAGCTATTGCTTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTACACTCCACTCTCTCCAATGGGATCAAGCTATTGCTTGGTTT  850

seq1  TGAGTATGCGGAGGTGGCCTAAGAGGTTATTTCTTTAAACATTTTACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATGCGGAGGTGGCCTAAGAGGTTATTTCTTTAAACATTTTACTGT  900

seq1  TTCTGTGGCGTGTGCAGGCACCCGTGTGCAGGCACCCGTGTGCAGGCACG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTGTGGCGTGTGCAGGCACCCGTGTGCAGGCACCCGTGTGCA-GCACG  949

seq1  AGGACAATGTGGAGAGTTGGCTCTTTCCACTCTGACTTCGGGGATTTAAT  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGAC-ATGTGGAGAGTTGGCTCTTTCCACTCTGACTTCGGGGATTTAA-  997

seq1  TCAGTTCTCCCTGGCCCTCTTCATTTTTTGAGACTGGATCTCTCATAACC  1050
      |||||||| ||||| |||| ||| ||||||||||||||||   ||||  |
seq2  TCAGTTCT-CCTGG-CCTC-TCA-TTTTTGAGACTGGATCCTCCATA--C  1041

seq1  GGGGCTGGCTTAAGACTTGCTAATGATGCCGAGTCCCCACCCTCCTGCGT  1100
       ||||||||||||||||||||  ||||||| ||| |||  ||||||||||
seq2  CGGGCTGGCTTAAGACTTGCT--TGATGCC-AGTTCCCCACCTCCTGCGT  1088

seq1  CTCTCT-GACAGGATGAACCTTTCCTGAGGGTTGGACGTGGCAGTGTACA  1149
      | |||| |||| |||| |||||| ||||||| ||||| |||||| || ||
seq2  C-CTCTCGACA-GATG-ACCTTT-CTGAGGG-TGGAC-TGGCAG-GT-CA  1130

seq1  T-CAGTGTGTTAGGAAGAGCTGGAAAGCACGTCACAGTTGCAT  1191
      | ||||| ||||||||||||| |||||  |||||||| |||||
seq2  TACAGTG-GTTAGGAAGAGCT-GAAAGACCGTCACAG-TGCAT  1170

seq1: chr1_13272178_13272430
seq2: B6Ng01-058B16.g_74_326 (reverse)

seq1  ACACACACACACACACACACACACACACACACAGCAGTAGTGAAGCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACAGCAGTAGTGAAGCACTA  50

seq1  GTCATGTATTTAAATTCAATGGCATGTCAAGGCTAACCTAAATCCTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTATTTAAATTCAATGGCATGTCAAGGCTAACCTAAATCCTGCTG  100

seq1  TTTAGTGGACAAAGCCAGTTTAGGTTTAATGATGTTAAAAGTGTGATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGGACAAAGCCAGTTTAGGTTTAATGATGTTAAAAGTGTGATCTA  150

seq1  GACTGGAACCAGTAGCTTGCTACAGACTTTTTTTTTAATGGCACATAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAACCAGTAGCTTGCTACAGACTTTTTTTTTAATGGCACATAGTC  200

seq1  CTTTGCCTTTTGAATTCAAACTAAAGAATTCTCCATCCCATAATTCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTTTTGAATTCAAACTAAAGAATTCTCCATCCCATAATTCAGAC  250

seq1  CAG  253
      |||
seq2  CAG  253