BAC Information

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BAC

Clone NameB6Ng01-058G13
Chromosome1 (Build37)4 (Build37)
Map Location 55,929,646 - 55,930,14981,054,046 - 81,054,611
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAnkrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
Downstream gene9130227L01Rik, Hsfy2, Satb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058G13.bB6Ng01-058G13.g
ACCDH879996DH879997
length1,154953
definitionDH879996|Mus musculus domesticus DNA, BAC clone: B6Ng01-058G13, 5' end.DH879997|Mus musculus domesticus DNA, BAC clone: B6Ng01-058G13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,929,646 - 55,930,149)(81,054,046 - 81,054,611)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacgccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcttggatatggagaaagaggaacactcctccattgttggtg
ggatagcaggcttgtacaaccactctggaaatcagtctggcggttcctca
ggaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagatggaaagaacccagat
gcccctcaacagaggaatggatacagaaaacgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcttgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctccatg
gagagctagagaagtacccaggagctaaagggatctgcaccctatagtga
acaacatatgaactaccagtacccgagctcttgactctagctgcatatgt
atcaaagaatgctagtcgctatcctggaaagaaagcccatggaaacaaac
tttatatgccctacaagggaacgcctgggccaaaaggggatgggtgggat
aggg
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgtatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagatttttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttttatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccacttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgtttat
taggatttttgtccctgtgccctctagtgagtttgctaagggttatctat
cttgttgatttttctcaaagaaccaactcctcgttggttaattctttgat
agtcttcttgtttccacttggttgatttcaccccggaggtttgattattt
cctggcgtctcctccttcttggggtgaatttggctttcttttttctagag
cttttagatgtgttgtaagctgcaagatgggcttctctcccgttcttctt
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_55929646_55930149
seq2: B6Ng01-058G13.b_994_1200 (reverse)

seq1  CCCTATCCCACCCATCTCAGTTTTTGACTTCTTCTGAGATCCAAGAGAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGAAGGCAGAACAAGAGAAGCAACCCAGGGAACGTTTGTATTTGTGGCAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGGAGCTAACAGTGGGATGCTTTTTTTTTTTCTTTTTCTTTCTTTTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTAACATAGTTGCTTTAAAATTTTTCATTTCCATTCAGCTTTTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAATTAGGTATTTTCTTCATTACATTTCCAATGCTATTCCAAAAATCC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCCATACCCTCCCCCCCTACTCCCCTA-CCCACCCACTCCCACTTCTTGG  299
                            ||||| |||||||| |||| ||| ||||
seq2  ----------------------CCCTATCCCACCCA-TCCC-CTT-TTGG  25

seq1  CCCTGGCATTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACCAATGGG  349
      ||| ||| ||||| ||||    |||||||||||||||      | |||||
seq2  CCCAGGCGTTCCCTTGTA---GGGCATATAAAGTTTG---TTTCCATGGG  69

seq1  CCTCTCTTTCCAATGATGGCCGACTAGGCCATCTTCTGCTACATATGCAG  399
       || ||||||| | ||| | |||||||  |||  | || |||||||||||
seq2  -CTTTCTTTCC-AGGATAG-CGACTAG--CATTCTTTGATACATATGCAG  114

seq1  CTAGAGACAGGAGCTCTGGGGGGTACTGGTTAGTTCATATTGTTGTTCCA  449
      |||||| || ||||||    ||||||||| ||||||||| ||||||||  
seq2  CTAGAGTCAAGAGCTC----GGGTACTGG-TAGTTCATA-TGTTGTTC--  156

seq1  CCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTTTCTAGCTCC  499
       |||||||| |||||| ||||| |||||| ||||||| || ||||||| |
seq2  ACTATAGGG-TGCAGATCCCTTTAGCTCC-TGGGTAC-TTCTCTAGCT-C  202

seq1  TCCAT  504
      |||||
seq2  TCCAT  207

seq1: chr4_81054046_81054611
seq2: B6Ng01-058G13.g_459_1022 (reverse)

seq1  TCCATGAAGAAACGGGAGAG-AGCACATACTAGCAGCTTGACAACACATC  49
      |||| |||| |||||||||| ||| ||| || ||||||| ||||||||||
seq2  TCCAAGAAG-AACGGGAGAGAAGCCCAT-CTTGCAGCTT-ACAACACATC  47

seq1  TAAAAGCTCTAGAAAAAAAGGAAG-CAAATTCA-CCCAAG-AGGAGTAGA  96
      |||||||||||| ||||||| ||| |||||||| |||||| ||||| |||
seq2  TAAAAGCTCTAG-AAAAAAGAAAGCCAAATTCACCCCAAGAAGGAGGAGA  96

seq1  CGGCAGGAAATAATCAAA-CTCAGGGGTGAAATCAACCAAGTGGAAACAA  145
      || ||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  CGCCAGGAAATAATCAAACCTCCGGGGTGAAATCAACCAAGTGGAAACAA  146

seq1  GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAG-AA  194
      |||| |||| |||||||||||||| |||||||||||||||||||||| ||
seq2  GAAG-ACTA-TCAAAGAATTAACC-AACGAGGAGTTGGTTCTTTGAGAAA  193

seq1  AATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGAG  244
      |||||||||||||||| |||||||||| | |||||||||||||||||| |
seq2  AATCAACAAGATAGAT-AACCCTTAGC-AAACTCACTAGAGGGCACAGGG  241

seq1  AC-AAAATCCTAATTAACAAAATCAGAACTGAAAAGGGAGACATAACAAC  293
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAAAAATCCTAATAAACAAAATCAGAACTGAAAAGGGAGACATAACAAC  291

seq1  AGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAT  341

seq1  ACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGA  393
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTCAACAAAACTGGAAAACCTGGACGAAGTGGACAAATTTCTGGACAGA  391

seq1  TACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCC  441

seq1  CATATCCCCTAAAGAAATAGAAGCAGTTATAAATAGTCTCCCAGCCAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCCCTAAAGAAATAGAAGCAGTTATAAATAGTCTCCCAGCCAAAA  491

seq1  AAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA  541

seq1  GAAGATCTAATTCCAGTTCTGCA  566
      |||||||||||||||||||||||
seq2  GAAGATCTAATTCCAGTTCTGCA  564