BAC Information

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BAC

Clone NameB6Ng01-060G01
Chromosome1 (Build37)
Map Location 71,572,677 - 71,714,246
singlet/doubletdoublet
Overlap geneAtic, Fn1, LOC100042814
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101
Downstream geneGabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060G01.bB6Ng01-060G01.g
ACCDH881366DH881367
length1,0351,132
definitionDH881366|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G01, 5' end.DH881367|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,713,583 - 71,714,246)(71,572,677 - 71,573,828)
sequence
gaattcatcccctagacatttctgggcaatctagacacctcagagatgct
cccttcatagaagaaagtctttccaaaaaaatgagctaaaccttgagatg
cccttaaggtgtcattcccatggtcctagtgtgcctgcattctttaaacc
acctccatctctttgaaaccatcttttcctgagatccaactttaaacatg
cgtctaggaaaaaaaatcactttccccccagaatcctgctgttctgtttt
atcacttcaaattctcactgtatacttggctaaaagcagccagcaagatc
cgcgccacagtgtgaatgctaggctgtcctgaaatttccaaatgagtatg
tcatcttgtgactcagcctctcccagagtctcagaaagccatttaccaca
gtgtagcacgaagcctcatggacagtcagtgttgctggtgacatactcac
ctgatgagcttcccaccaagattacctgttatgaacctctgcttatgcat
gctcaggcttctagcccacgtcataaaaatacttcagattcctccctgca
aactggttcaaatgcttttgaaggaccctactcacctacaaacaatttcc
tgttagtcagcacttctgggtgctgtgaccaaacacaggagagaaacaac
ttattcctttgccacattttcttccttctaagatcccgatctattggaca
gtccagctcacagccaggatgaattttctcttactgaatctgcctgaaaa
tatgtcccctctccccccagccagacttgtgctatactactcctgtcgat
ggactggatcaagactggcttcagaaatcaatctctctctctctctctct
ctctctctctctctctctctctctcaaaactgaggatcagacttcaacgt
taacattgagaagatggcggacactttcagtccataacaaatagctatta
taagttttgaatgtgtaatagggtgtcctttatacaggataccttcaaaa
taactattagttactccttctggtttctgaactag
gaattccatacataaagcagtaagatttctaacatttatttatcaaagtt
gtttctcaaggaggtttgggaatttttgtgtggatattgtaggtgcctct
gtgtgtgtttggcttgatttggtttgggtagtgctggggtttgaagccag
ggcctcatgcctgccaggcaagcactcttccactggagccacagccccat
ctggagatagttcttaactatcttgcccatttgaaactcttacacattca
ggcaaaaagagactttgcccacatatcacacagttttctaagtcacaacc
tgtactcctgtctggtacacgaagccaaatcctgttattccttccgttta
tttgttcctttggtaatactctgacaattttatttctgaggtctcacttg
ttacacatttccatagtttgcatccacaaaaatgattctttccaggccta
atttcagtattgttctctcaaaaaacaataggaatactgaacttttaaaa
tcatttgccaaattttccacttcctggtcccacagtgattatggtcaata
cccccatagagtagccacgctcgctcctcatgagttctggaaggcgatga
tgcaaaggagtcacttctcccgggtgcgtgtttccctggtttccacagaa
cagggcacctgtcaggagcatcccttcatgtgcctataaaaagatacctt
gtgctccagcaaactcacacagcacactgcccatcacattcactgcctaa
cacatactttctgatccctctgtcttcggtcagatccaggaagaccaaac
cccgacagaaaagacatatgcaaggccccacagcaggaacaagttcagta
ggtgttgcctgttggcccctgagaattctccattgattgaccagagaaga
gcaagagctaccacaggaagagtggcactagagatgtgtcctaccttggg
tctatcacagcacaaatttcccattaaactcatatatgagcttacttcta
atcttttttccttctcaaaagaattatgattgaaagctatagctgattgt
aagtgacaggtggaaggccatggcagatctcactgatacttaggcgaaca
gaatgctgagactgttatgtatgggagaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71713583_71714246
seq2: B6Ng01-060G01.b_423_1078 (reverse)

seq1  CTAGTTCAGAAACCAGAAGGGATAACTAATGGTTATCTCTTGAAGGTATC  50
      ||||||||||||||||||||  |||||||| ||||  | |||||||||||
seq2  CTAGTTCAGAAACCAGAAGGAGTAACTAATAGTTA--TTTTGAAGGTATC  48

seq1  CATGTTATAAAGGTACA-CCTATTAACACATTCAAAACTTTATATAGCTA  99
      | || |||||||| ||| |||||| |||||||||||||||   |||||||
seq2  C-TG-TATAAAGG-ACACCCTATT-ACACATTCAAAACTTATAATAGCTA  94

seq1  TTTGTTATGGACTGAATGTGTTCTGCCATCTTCTCAATGTTATACGTTGA  149
      |||||||||||||||| ||| || |||||||||||||||||| |||||||
seq2  TTTGTTATGGACTGAAAGTG-TCCGCCATCTTCTCAATGTTA-ACGTTGA  142

seq1  AGTCTGATCCTCAGTTTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTCTGATCCTCAGTTTT-GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  191

seq1  AGAGAGAGAGAGATTGATTTCTGAAGCCAGTCTTGATCCAGTCCATCGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGATTGATTTCTGAAGCCAGTCTTGATCCAGTCCATCGAC  241

seq1  AGGAGTAGTATAGCACAAGTCTGGCTGGGGGGAGAGGGGACATATTTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGTATAGCACAAGTCTGGCTGGGGGGAGAGGGGACATATTTTCA  291

seq1  GGCAGATTCAGTAAGAGAAAATTCATCCTGGCTGTGAGCTGGACTGTCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATTCAGTAAGAGAAAATTCATCCTGGCTGTGAGCTGGACTGTCCA  341

seq1  ATAGATCGGGATCTTAGAAGGAAGAAAATGTGGCAAAGGAATAAGTTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCGGGATCTTAGAAGGAAGAAAATGTGGCAAAGGAATAAGTTGTT  391

seq1  TCTCTCCTGTGTTTGGTCACAGCACCCAGAAGTGCTGACTAACAGGAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGTGTTTGGTCACAGCACCCAGAAGTGCTGACTAACAGGAAAT  441

seq1  TGTTTGTAGGTGAGTAGGGTCCTTCAAAAGCATTTGAACCAGTTTGCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAGGTGAGTAGGGTCCTTCAAAAGCATTTGAACCAGTTTGCAGG  491

seq1  GAGGAATCTGAAGTATTTTTATGACGTGGGCTAGAAGCCTGAGCATGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATCTGAAGTATTTTTATGACGTGGGCTAGAAGCCTGAGCATGCAT  541

seq1  AAGCAGAGGTTCATAACAGGTAATCTTGGTGGGAAGCTCATCAGGTGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGGTTCATAACAGGTAATCTTGGTGGGAAGCTCATCAGGTGAGT  591

seq1  ATGTCACCAGCAACACTGACTGTCCATGAGGCTTCGTGCTACACTGTGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCAGCAACACTGACTGTCCATGAGGCTTCGTGCTACACTGTGGT  641

seq1  AAATGGCTTTCTGAG  664
      |||||||||||||||
seq2  AAATGGCTTTCTGAG  656

seq1: chr1_71572677_71573828
seq2: B6Ng01-060G01.g_65_1196

seq1  GAATTCCATACATAAAGCAGTAAGATTTCTAACATTTATTTATCAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACATAAAGCAGTAAGATTTCTAACATTTATTTATCAAAGTT  50

seq1  GTTTCTCAAGGAGGTTTGGGAATTTTTGTGTGGATATTGTAGGTGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAAGGAGGTTTGGGAATTTTTGTGTGGATATTGTAGGTGCCTCT  100

seq1  GTGTGTGTTTGGCTTGATTTGGTTTGGGTAGTGCTGGGGTTTGAAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTTGGCTTGATTTGGTTTGGGTAGTGCTGGGGTTTGAAGCCAG  150

seq1  GGCCTCATGCCTGCCAGGCAAGCACTCTTCCACTGGAGCCACAGCCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCATGCCTGCCAGGCAAGCACTCTTCCACTGGAGCCACAGCCCCAT  200

seq1  CTGGAGATAGTTCTTAACTATCTTGCCCATTTGAAACTCTTACACATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATAGTTCTTAACTATCTTGCCCATTTGAAACTCTTACACATTCA  250

seq1  GGCAAAAAGAGACTTTGCCCACATATCACACAGTTTTCTAAGTCACAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAAGAGACTTTGCCCACATATCACACAGTTTTCTAAGTCACAACC  300

seq1  TGTACTCCTGTCTGGTACACGAAGCCAAATCCTGTTATTCCTTCCGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCTGTCTGGTACACGAAGCCAAATCCTGTTATTCCTTCCGTTTA  350

seq1  TTTGTTCCTTTGGTAATACTCTGACAATTTTATTTCTGAGGTCTCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTTTGGTAATACTCTGACAATTTTATTTCTGAGGTCTCACTTG  400

seq1  TTACACATTTCCATAGTTTGCATCCACAAAAATGATTCTTTCCAGGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATTTCCATAGTTTGCATCCACAAAAATGATTCTTTCCAGGCCTA  450

seq1  ATTTCAGTATTGTTCTCTCAAAAAACAATAGGAATACTGAACTTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTATTGTTCTCTCAAAAAACAATAGGAATACTGAACTTTTAAAA  500

seq1  TCATTTGCCAAATTTTCCACTTCCTGGTCCCACAGTGATTATGGTCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCCAAATTTTCCACTTCCTGGTCCCACAGTGATTATGGTCAATA  550

seq1  CCCCCATAGAGTAGCCACGCTCGCTCCTCATGAGTTCTGGAAGGCGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATAGAGTAGCCACGCTCGCTCCTCATGAGTTCTGGAAGGCGATGA  600

seq1  TGCAAAGGAGTCACTTCTCCCGGGTGCGTGTTTCCCTGGTTTCCACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGAGTCACTTCTCCCGGGTGCGTGTTTCCCTGGTTTCCACAGAA  650

seq1  CAGGGCACCTGTCAGGAGCATCCCTTCATGTGCCTATAAAAAGATACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACCTGTCAGGAGCATCCCTTCATGTGCCTATAAAAAGATACCTT  700

seq1  GTGCTCCAGCAAACTCACACAGCACACTGCCCATCACATTCACTGCCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCAGCAAACTCACACAGCACACTGCCCATCACATTCACTGCCTAA  750

seq1  CACATACTTTCTGATCCCTCTGTCTTCGGTCAGATCCAGGAAGACCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTTTCTGATCCCTCTGTCTTCGGTCAGATCCAGGAAGACCAAAC  800

seq1  CCCGACAGAAAAGACATATGCAAGGCCCCACAGCAGGAACAAGTTCAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACAGAAAAGACATATGCAAGGCCCCACAGCAGGAACAAGTTCAGTA  850

seq1  GGTGTTGCCTGTTGGCCCCTGAGAATTCTCCATTGATTGACCCAGAGAAG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTGTTGCCTGTTGGCCCCTGAGAATTCTCCATTGATTGA-CCAGAGAAG  899

seq1  AGCAAGAGCTACCACAGGAAGAGTGGCACCTAGAGATGTGTCCTACCTTG  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCAAGAGCTACCACAGGAAGAGTGGCA-CTAGAGATGTGTCCTACCTTG  948

seq1  GGTCTATCACCAGCACAAATTTCCCATTTAAACTCATATATGAGCTTAAC  1000
      ||||||||| |||||||||||||||| |||||||||||||||||||||  
seq2  GGTCTATCA-CAGCACAAATTTCCCA-TTAAACTCATATATGAGCTTACT  996

seq1  TCTAATCTTTTTTCCTTCTTCAAAAGATATTATGATTGTAAAAGCTATAG  1050
      |||||||||||||||||| |||||||| ||||||||||  ||||||||||
seq2  TCTAATCTTTTTTCCTTC-TCAAAAGA-ATTATGATTG--AAAGCTATAG  1042

seq1  CTGATTGTAAAGTGACAGGTGAAAGGCCAATGGCAGGTCTCTCACTGATA  1100
      |||||||| |||||||||||| |||||| |||||||   |||||||||||
seq2  CTGATTGT-AAGTGACAGGTGGAAGGCC-ATGGCAG--ATCTCACTGATA  1088

seq1  ACCTCAGGCAGAAACAAAGATGGCTGAAGACTGTTTATGTATGGGAGAAC  1150
        || |||| ||   | |||  |||| |||||| ||||||||||||||||
seq2  --CTTAGGC-GA---ACAGAATGCTG-AGACTG-TTATGTATGGGAGAAC  1130

seq1  TT  1152
      ||
seq2  TT  1132